HEADER VIRAL PROTEIN 16-JUN-03 1PP1 TITLE CRYSTAL STRUCTURE OF THE BORNA DISEASE VIRUS NUCLEOPROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: P40 NUCLEOPROTEIN; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORNA DISEASE VIRUS; SOURCE 3 ORGANISM_TAXID: 12455; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMAL-C2G KEYWDS RNA VIRUS NUCLEOPROTEIN TETRAMER, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH,I.KRAUS,A.DICKMANNS,W.GARTEN,R.FICNER REVDAT 4 13-NOV-24 1PP1 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1PP1 1 VERSN REVDAT 2 24-FEB-09 1PP1 1 VERSN REVDAT 1 07-OCT-03 1PP1 0 JRNL AUTH M.G.RUDOLPH,I.KRAUS,A.DICKMANNS,M.EICKMANN,W.GARTEN,R.FICNER JRNL TITL CRYSTAL STRUCTURE OF THE BORNA DISEASE VIRUS NUCLEOPROTEIN JRNL REF STRUCTURE V. 11 1219 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 14527390 JRNL DOI 10.1016/J.STR.2003.08.011 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 36657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1957 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2179 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2591 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.377 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2662 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2450 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3601 ; 1.414 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5722 ; 1.411 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 5.787 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2917 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 527 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 563 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2661 ; 0.238 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1400 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 284 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.153 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 115 ; 0.301 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.213 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1668 ; 1.031 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2698 ; 1.919 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 994 ; 2.669 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 903 ; 4.355 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1PP1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000019469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793, 0.802, 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38615 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 3.190 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 17.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23200 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.13050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.13050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.67000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.13050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.13050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.67000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 50.13050 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 50.13050 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 51.67000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 50.13050 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 50.13050 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 51.67000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE AUTHORS STATE THAT THE CRYSTALLOGRAPHIC DATA STRONGLY REMARK 300 SUPPORT A TETRAMER. THE AUTHORS CAN NOT CONFIRM THIS AT REMARK 300 PRESENT, SINCE THERE ARE NO INDEPENDENT DATA PUBLISHED AS REMARK 300 TO THE OLIGOMERIC STATE OF THE PROTEIN IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 19400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 100.26100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 100.26100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 100.26100 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 100.26100 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL X -4 REMARK 465 GLU X -3 REMARK 465 PHE X -2 REMARK 465 GLY X -1 REMARK 465 SER X 0 REMARK 465 MSE X 1 REMARK 465 PRO X 2 REMARK 465 PRO X 3 REMARK 465 LYS X 4 REMARK 465 ARG X 5 REMARK 465 ARG X 6 REMARK 465 LEU X 7 REMARK 465 VAL X 8 REMARK 465 ASP X 9 REMARK 465 ASP X 10 REMARK 465 ALA X 11 REMARK 465 ASP X 12 REMARK 465 ALA X 13 REMARK 465 MSE X 14 REMARK 465 GLU X 15 REMARK 465 ASP X 16 REMARK 465 GLN X 17 REMARK 465 ASP X 18 REMARK 465 LEU X 19 REMARK 465 TYR X 20 REMARK 465 GLU X 21 REMARK 465 PRO X 22 REMARK 465 PRO X 23 REMARK 465 ALA X 24 REMARK 465 SER X 25 REMARK 465 LEU X 26 REMARK 465 PRO X 27 REMARK 465 PRO X 315 REMARK 465 THR X 316 REMARK 465 MSE X 317 REMARK 465 ALA X 318 REMARK 465 GLY X 319 REMARK 465 TYR X 320 REMARK 465 ARG X 321 REMARK 465 ALA X 322 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG X 107 CG CD NE CZ NH1 NH2 REMARK 470 GLU X 109 CG CD OE1 OE2 REMARK 470 GLU X 352 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH X 490 O HOH X 722 2.07 REMARK 500 O HOH X 540 O HOH X 623 2.15 REMARK 500 O ILE X 155 O HOH X 581 2.19 REMARK 500 O HOH X 563 O HOH X 716 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 564 O HOH X 695 3655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE X 187 CA - CB - CG ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU X 109 -27.66 74.05 REMARK 500 LYS X 122 86.84 -57.60 REMARK 500 THR X 123 58.27 -101.84 REMARK 500 ALA X 157 -79.69 -126.78 REMARK 500 TYR X 232 19.28 59.96 REMARK 500 ALA X 277 -124.44 49.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N93 RELATED DB: PDB REMARK 900 NATIVE PROTEIN DBREF 1PP1 X 1 370 UNP Q01552 NCAP_BDV 1 370 SEQADV 1PP1 VAL X -4 UNP Q01552 CLONING ARTIFACT SEQADV 1PP1 GLU X -3 UNP Q01552 CLONING ARTIFACT SEQADV 1PP1 PHE X -2 UNP Q01552 CLONING ARTIFACT SEQADV 1PP1 GLY X -1 UNP Q01552 CLONING ARTIFACT SEQADV 1PP1 SER X 0 UNP Q01552 CLONING ARTIFACT SEQADV 1PP1 MSE X 1 UNP Q01552 MET 1 MODIFIED RESIDUE SEQADV 1PP1 MSE X 14 UNP Q01552 MET 14 MODIFIED RESIDUE SEQADV 1PP1 MSE X 68 UNP Q01552 MET 68 MODIFIED RESIDUE SEQADV 1PP1 MSE X 169 UNP Q01552 MET 169 MODIFIED RESIDUE SEQADV 1PP1 MSE X 170 UNP Q01552 MET 170 MODIFIED RESIDUE SEQADV 1PP1 MSE X 187 UNP Q01552 MET 187 MODIFIED RESIDUE SEQADV 1PP1 MSE X 223 UNP Q01552 MET 223 MODIFIED RESIDUE SEQADV 1PP1 MSE X 235 UNP Q01552 MET 235 MODIFIED RESIDUE SEQADV 1PP1 MSE X 249 UNP Q01552 MET 249 MODIFIED RESIDUE SEQADV 1PP1 MSE X 317 UNP Q01552 MET 317 MODIFIED RESIDUE SEQADV 1PP1 MSE X 361 UNP Q01552 MET 361 MODIFIED RESIDUE SEQADV 1PP1 MSE X 363 UNP Q01552 MET 363 MODIFIED RESIDUE SEQRES 1 X 375 VAL GLU PHE GLY SER MSE PRO PRO LYS ARG ARG LEU VAL SEQRES 2 X 375 ASP ASP ALA ASP ALA MSE GLU ASP GLN ASP LEU TYR GLU SEQRES 3 X 375 PRO PRO ALA SER LEU PRO LYS LEU PRO GLY LYS PHE LEU SEQRES 4 X 375 GLN TYR THR VAL GLY GLY SER ASP PRO HIS PRO GLY ILE SEQRES 5 X 375 GLY HIS GLU LYS ASP ILE ARG GLN ASN ALA VAL ALA LEU SEQRES 6 X 375 LEU ASP GLN SER ARG ARG ASP MSE PHE HIS THR VAL THR SEQRES 7 X 375 PRO SER LEU VAL PHE LEU CYS LEU LEU ILE PRO GLY LEU SEQRES 8 X 375 HIS ALA ALA PHE VAL HIS GLY GLY VAL PRO ARG GLU SER SEQRES 9 X 375 TYR LEU SER THR PRO VAL THR ARG GLY GLU GLN THR VAL SEQRES 10 X 375 VAL LYS THR ALA LYS PHE TYR GLY GLU LYS THR THR GLN SEQRES 11 X 375 ARG ASP LEU THR GLU LEU GLU ILE SER SER ILE PHE SER SEQRES 12 X 375 HIS CYS CYS SER LEU LEU ILE GLY VAL VAL ILE GLY SER SEQRES 13 X 375 SER SER LYS ILE LYS ALA GLY ALA GLU GLN ILE LYS LYS SEQRES 14 X 375 ARG PHE LYS THR MSE MSE ALA ALA LEU ASN ARG PRO SER SEQRES 15 X 375 HIS GLY GLU THR ALA THR LEU LEU GLN MSE PHE ASN PRO SEQRES 16 X 375 HIS GLU ALA ILE ASP TRP ILE ASN GLY GLN PRO TRP VAL SEQRES 17 X 375 GLY SER PHE VAL LEU SER LEU LEU THR THR ASP PHE GLU SEQRES 18 X 375 SER PRO GLY LYS GLU PHE MSE ASP GLN ILE LYS LEU VAL SEQRES 19 X 375 ALA SER TYR ALA GLN MSE THR THR TYR THR THR ILE LYS SEQRES 20 X 375 GLU TYR LEU ALA GLU CYS MSE ASP ALA THR LEU THR ILE SEQRES 21 X 375 PRO VAL VAL ALA TYR GLU ILE ARG ASP PHE LEU GLU VAL SEQRES 22 X 375 SER ALA LYS LEU LYS GLU ASP HIS ALA ASP LEU PHE PRO SEQRES 23 X 375 PHE LEU GLY ALA ILE ARG HIS PRO ASP ALA ILE LYS LEU SEQRES 24 X 375 ALA PRO ARG SER PHE PRO ASN LEU ALA SER ALA ALA PHE SEQRES 25 X 375 TYR TRP SER LYS LYS GLU ASN PRO THR MSE ALA GLY TYR SEQRES 26 X 375 ARG ALA SER THR ILE GLN PRO GLY ALA SER VAL LYS GLU SEQRES 27 X 375 THR GLN LEU ALA ARG TYR ARG ARG ARG GLU ILE SER ARG SEQRES 28 X 375 GLY GLU ASP GLY ALA GLU LEU SER GLY GLU ILE SER ALA SEQRES 29 X 375 ILE MSE LYS MSE ILE GLY VAL THR GLY LEU ASN MODRES 1PP1 MSE X 68 MET SELENOMETHIONINE MODRES 1PP1 MSE X 169 MET SELENOMETHIONINE MODRES 1PP1 MSE X 170 MET SELENOMETHIONINE MODRES 1PP1 MSE X 187 MET SELENOMETHIONINE MODRES 1PP1 MSE X 223 MET SELENOMETHIONINE MODRES 1PP1 MSE X 235 MET SELENOMETHIONINE MODRES 1PP1 MSE X 249 MET SELENOMETHIONINE MODRES 1PP1 MSE X 361 MET SELENOMETHIONINE MODRES 1PP1 MSE X 363 MET SELENOMETHIONINE HET MSE X 68 8 HET MSE X 169 8 HET MSE X 170 8 HET MSE X 187 11 HET MSE X 223 8 HET MSE X 235 8 HET MSE X 249 8 HET MSE X 361 8 HET MSE X 363 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 HOH *382(H2 O) HELIX 1 1 HIS X 49 LYS X 51 5 3 HELIX 2 2 ASP X 52 LEU X 60 1 9 HELIX 3 3 ASP X 62 ASP X 67 1 6 HELIX 4 4 VAL X 72 ILE X 83 1 12 HELIX 5 5 GLY X 85 GLY X 93 1 9 HELIX 6 6 THR X 129 GLY X 150 1 22 HELIX 7 7 SER X 152 ALA X 157 1 6 HELIX 8 8 ALA X 159 LEU X 173 1 15 HELIX 9 9 SER X 177 ALA X 182 1 6 HELIX 10 10 PRO X 190 GLY X 199 1 10 HELIX 11 11 TRP X 202 THR X 213 1 12 HELIX 12 12 PRO X 218 SER X 231 1 14 HELIX 13 13 MSE X 235 CYS X 248 1 14 HELIX 14 14 ASP X 250 THR X 254 5 5 HELIX 15 15 ILE X 255 ALA X 277 1 23 HELIX 16 16 ASP X 278 LEU X 283 5 6 HELIX 17 17 HIS X 288 SER X 298 5 11 HELIX 18 18 PHE X 299 ASN X 314 1 16 HELIX 19 19 LYS X 332 ARG X 341 1 10 HELIX 20 20 SER X 354 MSE X 363 1 10 SHEET 1 A 2 SER X 99 VAL X 105 0 SHEET 2 A 2 VAL X 112 THR X 115 -1 O THR X 115 N SER X 99 LINK C ASP X 67 N MSE X 68 1555 1555 1.32 LINK C MSE X 68 N PHE X 69 1555 1555 1.35 LINK C THR X 168 N MSE X 169 1555 1555 1.33 LINK C MSE X 169 N MSE X 170 1555 1555 1.32 LINK C MSE X 170 N ALA X 171 1555 1555 1.33 LINK C GLN X 186 N MSE X 187 1555 1555 1.33 LINK C MSE X 187 N PHE X 188 1555 1555 1.33 LINK C PHE X 222 N MSE X 223 1555 1555 1.33 LINK C MSE X 223 N ASP X 224 1555 1555 1.34 LINK C GLN X 234 N MSE X 235 1555 1555 1.33 LINK C MSE X 235 N THR X 236 1555 1555 1.34 LINK C CYS X 248 N MSE X 249 1555 1555 1.33 LINK C MSE X 249 N ASP X 250 1555 1555 1.33 LINK C ILE X 360 N MSE X 361 1555 1555 1.34 LINK C MSE X 361 N LYS X 362 1555 1555 1.33 LINK C LYS X 362 N MSE X 363 1555 1555 1.34 LINK C MSE X 363 N ILE X 364 1555 1555 1.34 CISPEP 1 SER X 217 PRO X 218 0 2.76 CRYST1 100.261 100.261 103.340 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009974 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009677 0.00000