HEADER TRANSCRIPTION/DNA 16-JUN-03 1PP8 TITLE CRYSTAL STRUCTURE OF THE T. VAGINALIS IBP39 INITIATOR BINDING DOMAIN TITLE 2 (IBD) BOUND TO THE ALPHA-SCS INR ELEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-SCS INR; COMPND 3 CHAIN: E, I, Y, K; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE ALPHA-SCS INR PROMOTER ELEMENT, DNA SITE; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ALPHA-SCS INR; COMPND 8 CHAIN: T, R, J, G; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 39 KDA INITIATOR BINDING PROTEIN; COMPND 12 CHAIN: U, P, F, V, M, O; COMPND 13 FRAGMENT: RESIDUES 1-126; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; SOURCE 7 ORGANISM_TAXID: 5722; SOURCE 8 GENE: TRICHOMONAS VAGINALIS:IBP39; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PEQ60 KEYWDS IBP39, INITIATOR BINDING PROTEIN, INR, CORE PROMOTER, TRANSCRIPTION, KEYWDS 2 T. VAGINALIS, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER,A.O.T.LAU,P.J.JOHNSON REVDAT 3 14-FEB-24 1PP8 1 REMARK SEQADV SHEET REVDAT 2 24-FEB-09 1PP8 1 VERSN REVDAT 1 18-NOV-03 1PP8 0 JRNL AUTH M.A.SCHUMACHER,A.O.T.LAU,P.J.JOHNSON JRNL TITL STRUCTURAL BASIS OF CORE PROMOTER RECOGNITION IN A PRIMITIVE JRNL TITL 2 EUKARYOTE JRNL REF CELL(CAMBRIDGE,MASS.) V. 115 413 2003 JRNL REFN ISSN 0092-8674 JRNL PMID 14622596 JRNL DOI 10.1016/S0092-8674(03)00887-0 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 146.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 36045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.269 REMARK 3 FREE R VALUE : 0.311 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1836 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.24 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4489 REMARK 3 BIN R VALUE (WORKING SET) : 0.3840 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 247 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5314 REMARK 3 NUCLEIC ACID ATOMS : 1944 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 99.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.38 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 2.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.630 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.630 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.180 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.220 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 9.820 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 190.7 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AFTER STRUCTURE DETERMINATION, MINIMAL REMARK 3 REFINEMENT WAS CARRIED OUT IN CNS. REMARK 4 REMARK 4 1PP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000019475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36349 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 146.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48800 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, MES PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z+1/2 REMARK 290 15555 -X,Y+1/2,-Z+1/2 REMARK 290 16555 X,-Y+1/2,-Z+1/2 REMARK 290 17555 Z,X+1/2,Y+1/2 REMARK 290 18555 Z,-X+1/2,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y+1/2 REMARK 290 20555 -Z,X+1/2,-Y+1/2 REMARK 290 21555 Y,Z+1/2,X+1/2 REMARK 290 22555 -Y,Z+1/2,-X+1/2 REMARK 290 23555 Y,-Z+1/2,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X+1/2 REMARK 290 25555 X+1/2,Y,Z+1/2 REMARK 290 26555 -X+1/2,-Y,Z+1/2 REMARK 290 27555 -X+1/2,Y,-Z+1/2 REMARK 290 28555 X+1/2,-Y,-Z+1/2 REMARK 290 29555 Z+1/2,X,Y+1/2 REMARK 290 30555 Z+1/2,-X,-Y+1/2 REMARK 290 31555 -Z+1/2,-X,Y+1/2 REMARK 290 32555 -Z+1/2,X,-Y+1/2 REMARK 290 33555 Y+1/2,Z,X+1/2 REMARK 290 34555 -Y+1/2,Z,-X+1/2 REMARK 290 35555 Y+1/2,-Z,-X+1/2 REMARK 290 36555 -Y+1/2,-Z,X+1/2 REMARK 290 37555 X+1/2,Y+1/2,Z REMARK 290 38555 -X+1/2,-Y+1/2,Z REMARK 290 39555 -X+1/2,Y+1/2,-Z REMARK 290 40555 X+1/2,-Y+1/2,-Z REMARK 290 41555 Z+1/2,X+1/2,Y REMARK 290 42555 Z+1/2,-X+1/2,-Y REMARK 290 43555 -Z+1/2,-X+1/2,Y REMARK 290 44555 -Z+1/2,X+1/2,-Y REMARK 290 45555 Y+1/2,Z+1/2,X REMARK 290 46555 -Y+1/2,Z+1/2,-X REMARK 290 47555 Y+1/2,-Z+1/2,-X REMARK 290 48555 -Y+1/2,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 146.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 146.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 146.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 146.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 146.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 146.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 146.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 146.00000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 146.00000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 146.00000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 146.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 146.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 146.00000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 146.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 146.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 146.00000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 146.00000 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 146.00000 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 146.00000 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 146.00000 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 146.00000 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 146.00000 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 146.00000 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 146.00000 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 146.00000 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 146.00000 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 146.00000 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 146.00000 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 146.00000 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 146.00000 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 146.00000 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 146.00000 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY1 37 1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY2 37 0.000000 1.000000 0.000000 146.00000 REMARK 290 SMTRY3 37 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 38 -1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY2 38 0.000000 -1.000000 0.000000 146.00000 REMARK 290 SMTRY3 38 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 39 -1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY2 39 0.000000 1.000000 0.000000 146.00000 REMARK 290 SMTRY3 39 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 40 1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY2 40 0.000000 -1.000000 0.000000 146.00000 REMARK 290 SMTRY3 40 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 41 0.000000 0.000000 1.000000 146.00000 REMARK 290 SMTRY2 41 1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY3 41 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 42 0.000000 0.000000 1.000000 146.00000 REMARK 290 SMTRY2 42 -1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY3 42 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 43 0.000000 0.000000 -1.000000 146.00000 REMARK 290 SMTRY2 43 -1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY3 43 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 44 0.000000 0.000000 -1.000000 146.00000 REMARK 290 SMTRY2 44 1.000000 0.000000 0.000000 146.00000 REMARK 290 SMTRY3 44 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 45 0.000000 1.000000 0.000000 146.00000 REMARK 290 SMTRY2 45 0.000000 0.000000 1.000000 146.00000 REMARK 290 SMTRY3 45 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 46 0.000000 -1.000000 0.000000 146.00000 REMARK 290 SMTRY2 46 0.000000 0.000000 1.000000 146.00000 REMARK 290 SMTRY3 46 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 47 0.000000 1.000000 0.000000 146.00000 REMARK 290 SMTRY2 47 0.000000 0.000000 -1.000000 146.00000 REMARK 290 SMTRY3 47 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 48 0.000000 -1.000000 0.000000 146.00000 REMARK 290 SMTRY2 48 0.000000 0.000000 -1.000000 146.00000 REMARK 290 SMTRY3 48 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT CONTAINS TWO APO IBDS REMARK 300 AND FOUR IBD-ALPHASCS COMPLEXES THAT ARE ARRANGED AS A REMARK 300 PSEUDOCONTINOUS HELIX. BECAUSE EXTRA IBD WAS USED IN THE REMARK 300 CRYSTALLIZATION, THERE ARE EXTRA APO IBDS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, J, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: Y, R, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, G, U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, T, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: O REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET U 1 REMARK 465 ASN U 113 REMARK 465 SER U 114 REMARK 465 VAL U 115 REMARK 465 PHE U 116 REMARK 465 GLU U 117 REMARK 465 ASP U 118 REMARK 465 PRO U 119 REMARK 465 THR U 120 REMARK 465 GLN U 121 REMARK 465 ASN U 122 REMARK 465 ASP U 123 REMARK 465 SER U 124 REMARK 465 PRO U 125 REMARK 465 MET U 126 REMARK 465 HIS U 127 REMARK 465 HIS U 128 REMARK 465 HIS U 129 REMARK 465 HIS U 130 REMARK 465 HIS U 131 REMARK 465 HIS U 132 REMARK 465 PRO P 119 REMARK 465 THR P 120 REMARK 465 GLN P 121 REMARK 465 ASN P 122 REMARK 465 ASP P 123 REMARK 465 SER P 124 REMARK 465 PRO P 125 REMARK 465 MET P 126 REMARK 465 HIS P 127 REMARK 465 HIS P 128 REMARK 465 HIS P 129 REMARK 465 HIS P 130 REMARK 465 HIS P 131 REMARK 465 HIS P 132 REMARK 465 MET F 1 REMARK 465 VAL F 115 REMARK 465 PHE F 116 REMARK 465 GLU F 117 REMARK 465 ASP F 118 REMARK 465 PRO F 119 REMARK 465 THR F 120 REMARK 465 GLN F 121 REMARK 465 ASN F 122 REMARK 465 ASP F 123 REMARK 465 SER F 124 REMARK 465 PRO F 125 REMARK 465 MET F 126 REMARK 465 HIS F 127 REMARK 465 HIS F 128 REMARK 465 HIS F 129 REMARK 465 HIS F 130 REMARK 465 HIS F 131 REMARK 465 HIS F 132 REMARK 465 MET V 1 REMARK 465 ASP V 2 REMARK 465 SER V 3 REMARK 465 ASN V 4 REMARK 465 ASP V 5 REMARK 465 LEU V 6 REMARK 465 GLU V 7 REMARK 465 ALA V 8 REMARK 465 ARG V 24 REMARK 465 LYS V 25 REMARK 465 SER V 26 REMARK 465 SER V 27 REMARK 465 ARG V 28 REMARK 465 ASP V 29 REMARK 465 PRO V 30 REMARK 465 ASN V 31 REMARK 465 SER V 32 REMARK 465 PHE V 116 REMARK 465 GLU V 117 REMARK 465 ASP V 118 REMARK 465 PRO V 119 REMARK 465 THR V 120 REMARK 465 GLN V 121 REMARK 465 ASN V 122 REMARK 465 ASP V 123 REMARK 465 SER V 124 REMARK 465 PRO V 125 REMARK 465 MET V 126 REMARK 465 HIS V 127 REMARK 465 HIS V 128 REMARK 465 HIS V 129 REMARK 465 HIS V 130 REMARK 465 HIS V 131 REMARK 465 HIS V 132 REMARK 465 PRO M 119 REMARK 465 THR M 120 REMARK 465 GLN M 121 REMARK 465 ASN M 122 REMARK 465 ASP M 123 REMARK 465 SER M 124 REMARK 465 PRO M 125 REMARK 465 MET M 126 REMARK 465 HIS M 127 REMARK 465 HIS M 128 REMARK 465 HIS M 129 REMARK 465 HIS M 130 REMARK 465 HIS M 131 REMARK 465 HIS M 132 REMARK 465 MET O 1 REMARK 465 ASP O 2 REMARK 465 SER O 3 REMARK 465 ASN O 4 REMARK 465 ASP O 5 REMARK 465 LEU O 6 REMARK 465 GLU O 7 REMARK 465 ALA O 8 REMARK 465 SER O 9 REMARK 465 LYS O 25 REMARK 465 SER O 26 REMARK 465 SER O 27 REMARK 465 ARG O 28 REMARK 465 ASP O 29 REMARK 465 PRO O 30 REMARK 465 ASN O 31 REMARK 465 SER O 32 REMARK 465 ARG O 33 REMARK 465 PHE O 116 REMARK 465 GLU O 117 REMARK 465 ASP O 118 REMARK 465 PRO O 119 REMARK 465 THR O 120 REMARK 465 GLN O 121 REMARK 465 ASN O 122 REMARK 465 ASP O 123 REMARK 465 SER O 124 REMARK 465 PRO O 125 REMARK 465 MET O 126 REMARK 465 HIS O 127 REMARK 465 HIS O 128 REMARK 465 HIS O 129 REMARK 465 HIS O 130 REMARK 465 HIS O 131 REMARK 465 HIS O 132 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN V 81 CB CG OD1 ND2 REMARK 470 ASN O 81 CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL U 75 N GLY U 77 2.05 REMARK 500 O LYS M 69 N ASN M 71 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP F 5 OD1 ASN M 4 21554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA Y 29 C5 DA Y 29 C6 -0.057 REMARK 500 DC G 3 C4 DC G 3 C5 0.049 REMARK 500 TRP U 105 CB TRP U 105 CG -0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC I 35 C5' - C4' - O4' ANGL. DEV. = 7.9 DEGREES REMARK 500 DC I 35 C1' - O4' - C4' ANGL. DEV. = -9.5 DEGREES REMARK 500 DC I 35 C3' - C2' - C1' ANGL. DEV. = -9.4 DEGREES REMARK 500 DC I 35 N1 - C1' - C2' ANGL. DEV. = 14.9 DEGREES REMARK 500 DC I 35 O4' - C1' - N1 ANGL. DEV. = 7.0 DEGREES REMARK 500 DT T 5 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC G 3 O5' - C5' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 PRO U 15 C - N - CA ANGL. DEV. = 14.4 DEGREES REMARK 500 PRO U 30 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 LEU P 14 CA - CB - CG ANGL. DEV. = 19.7 DEGREES REMARK 500 PRO P 16 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 PRO P 49 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 LEU P 87 CA - CB - CG ANGL. DEV. = -14.2 DEGREES REMARK 500 PRO F 16 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 LEU F 38 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 PRO F 49 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 ASN F 81 N - CA - CB ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE U 10 -74.49 -81.76 REMARK 500 ARG U 13 5.57 -59.34 REMARK 500 PRO U 15 106.65 -27.06 REMARK 500 LYS U 23 -5.30 -53.38 REMARK 500 LYS U 25 134.39 -31.11 REMARK 500 PRO U 30 14.00 -53.56 REMARK 500 PHE U 34 -78.14 -37.61 REMARK 500 PRO U 35 -50.41 -22.70 REMARK 500 HIS U 39 -27.49 -39.95 REMARK 500 MET U 40 -81.38 -62.25 REMARK 500 LEU U 45 -38.64 -36.70 REMARK 500 LEU U 57 109.46 178.73 REMARK 500 LYS U 68 77.95 -107.31 REMARK 500 MET U 76 10.80 -43.08 REMARK 500 ASN U 81 -72.50 -45.32 REMARK 500 PHE U 110 104.68 -12.49 REMARK 500 THR U 111 -44.11 -149.12 REMARK 500 ASP P 2 -125.83 -86.65 REMARK 500 ASP P 5 -5.95 -50.88 REMARK 500 ALA P 8 -78.49 -35.63 REMARK 500 SER P 9 -38.78 -35.74 REMARK 500 PHE P 10 -71.17 -69.39 REMARK 500 GLU P 17 -79.76 -50.84 REMARK 500 ARG P 24 176.93 -54.89 REMARK 500 SER P 26 92.53 -60.13 REMARK 500 ASN P 31 35.63 -77.09 REMARK 500 PHE P 34 -81.10 -9.75 REMARK 500 PRO P 35 -55.67 -23.90 REMARK 500 ALA P 46 -9.76 -59.82 REMARK 500 LEU P 57 97.11 -178.53 REMARK 500 ILE P 60 -60.76 -107.47 REMARK 500 LYS P 69 -61.86 -28.85 REMARK 500 ALA P 73 -17.93 -42.17 REMARK 500 LEU P 95 32.64 -67.98 REMARK 500 GLN P 96 129.87 -174.25 REMARK 500 ASP P 98 72.85 113.39 REMARK 500 SER P 108 -70.25 -59.17 REMARK 500 ARG P 112 -56.78 -26.97 REMARK 500 SER P 114 137.27 171.94 REMARK 500 GLU P 117 -69.93 -104.89 REMARK 500 ALA F 8 -86.98 -45.46 REMARK 500 SER F 9 -42.16 -29.05 REMARK 500 PHE F 10 -79.29 -64.77 REMARK 500 ARG F 13 9.89 -64.04 REMARK 500 VAL F 19 -70.34 -43.99 REMARK 500 ALA F 21 -74.21 -42.82 REMARK 500 SER F 27 -168.62 -119.45 REMARK 500 ARG F 33 -165.15 -76.14 REMARK 500 PHE F 34 -89.68 -64.08 REMARK 500 PRO F 35 -65.93 -11.85 REMARK 500 REMARK 500 THIS ENTRY HAS 136 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG E 26 0.07 SIDE CHAIN REMARK 500 DG K 26 0.08 SIDE CHAIN REMARK 500 DC K 33 0.06 SIDE CHAIN REMARK 500 DC T 3 0.11 SIDE CHAIN REMARK 500 DT T 5 0.08 SIDE CHAIN REMARK 500 DA T 10 0.06 SIDE CHAIN REMARK 500 DG R 13 0.07 SIDE CHAIN REMARK 500 DA J 14 0.11 SIDE CHAIN REMARK 500 DA G 14 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 V 599 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 O 299 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PP7 RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE IBD BOUND TO THE FERREDOXIN INR ELEMENT DBREF 1PP8 U 1 126 UNP Q95VR4 Q95VR4_TRIVA 1 126 DBREF 1PP8 P 1 126 UNP Q95VR4 Q95VR4_TRIVA 1 126 DBREF 1PP8 F 1 126 UNP Q95VR4 Q95VR4_TRIVA 1 126 DBREF 1PP8 V 1 126 UNP Q95VR4 Q95VR4_TRIVA 1 126 DBREF 1PP8 M 1 126 UNP Q95VR4 Q95VR4_TRIVA 1 126 DBREF 1PP8 O 1 126 UNP Q95VR4 Q95VR4_TRIVA 1 126 DBREF 1PP8 E 26 37 PDB 1PP8 1PP8 26 37 DBREF 1PP8 I 26 37 PDB 1PP8 1PP8 26 37 DBREF 1PP8 Y 26 37 PDB 1PP8 1PP8 26 37 DBREF 1PP8 K 26 37 PDB 1PP8 1PP8 26 37 DBREF 1PP8 T 3 14 PDB 1PP8 1PP8 3 14 DBREF 1PP8 R 3 14 PDB 1PP8 1PP8 3 14 DBREF 1PP8 J 3 14 PDB 1PP8 1PP8 3 14 DBREF 1PP8 G 3 14 PDB 1PP8 1PP8 3 14 SEQADV 1PP8 HIS U 127 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS U 128 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS U 129 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS U 130 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS U 131 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS U 132 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS P 127 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS P 128 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS P 129 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS P 130 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS P 131 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS P 132 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS F 127 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS F 128 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS F 129 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS F 130 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS F 131 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS F 132 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS V 127 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS V 128 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS V 129 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS V 130 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS V 131 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS V 132 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS M 127 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS M 128 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS M 129 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS M 130 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS M 131 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS M 132 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS O 127 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS O 128 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS O 129 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS O 130 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS O 131 UNP Q95VR4 EXPRESSION TAG SEQADV 1PP8 HIS O 132 UNP Q95VR4 EXPRESSION TAG SEQRES 1 E 12 DG DT DC DA DC DT DT DC DA DC DA DT SEQRES 1 I 12 DG DT DC DA DC DT DT DC DA DC DA DT SEQRES 1 Y 12 DG DT DC DA DC DT DT DC DA DC DA DT SEQRES 1 K 12 DG DT DC DA DC DT DT DC DA DC DA DT SEQRES 1 T 12 DC DA DT DG DT DG DA DA DG DT DG DA SEQRES 1 R 12 DC DA DT DG DT DG DA DA DG DT DG DA SEQRES 1 J 12 DC DA DT DG DT DG DA DA DG DT DG DA SEQRES 1 G 12 DC DA DT DG DT DG DA DA DG DT DG DA SEQRES 1 U 132 MET ASP SER ASN ASP LEU GLU ALA SER PHE THR SER ARG SEQRES 2 U 132 LEU PRO PRO GLU ILE VAL ALA ALA LEU LYS ARG LYS SER SEQRES 3 U 132 SER ARG ASP PRO ASN SER ARG PHE PRO ARG LYS LEU HIS SEQRES 4 U 132 MET LEU LEU THR TYR LEU ALA SER ASN PRO GLN LEU GLU SEQRES 5 U 132 GLU GLU ILE GLY LEU SER TRP ILE SER ASP THR GLU PHE SEQRES 6 U 132 LYS MET LYS LYS LYS ASN VAL ALA LEU VAL MET GLY ILE SEQRES 7 U 132 LYS LEU ASN THR LEU ASN VAL ASN LEU ARG ASP LEU ALA SEQRES 8 U 132 PHE GLU GLN LEU GLN HIS ASP LYS GLY GLY TRP THR GLN SEQRES 9 U 132 TRP LYS ARG SER GLY PHE THR ARG ASN SER VAL PHE GLU SEQRES 10 U 132 ASP PRO THR GLN ASN ASP SER PRO MET HIS HIS HIS HIS SEQRES 11 U 132 HIS HIS SEQRES 1 P 132 MET ASP SER ASN ASP LEU GLU ALA SER PHE THR SER ARG SEQRES 2 P 132 LEU PRO PRO GLU ILE VAL ALA ALA LEU LYS ARG LYS SER SEQRES 3 P 132 SER ARG ASP PRO ASN SER ARG PHE PRO ARG LYS LEU HIS SEQRES 4 P 132 MET LEU LEU THR TYR LEU ALA SER ASN PRO GLN LEU GLU SEQRES 5 P 132 GLU GLU ILE GLY LEU SER TRP ILE SER ASP THR GLU PHE SEQRES 6 P 132 LYS MET LYS LYS LYS ASN VAL ALA LEU VAL MET GLY ILE SEQRES 7 P 132 LYS LEU ASN THR LEU ASN VAL ASN LEU ARG ASP LEU ALA SEQRES 8 P 132 PHE GLU GLN LEU GLN HIS ASP LYS GLY GLY TRP THR GLN SEQRES 9 P 132 TRP LYS ARG SER GLY PHE THR ARG ASN SER VAL PHE GLU SEQRES 10 P 132 ASP PRO THR GLN ASN ASP SER PRO MET HIS HIS HIS HIS SEQRES 11 P 132 HIS HIS SEQRES 1 F 132 MET ASP SER ASN ASP LEU GLU ALA SER PHE THR SER ARG SEQRES 2 F 132 LEU PRO PRO GLU ILE VAL ALA ALA LEU LYS ARG LYS SER SEQRES 3 F 132 SER ARG ASP PRO ASN SER ARG PHE PRO ARG LYS LEU HIS SEQRES 4 F 132 MET LEU LEU THR TYR LEU ALA SER ASN PRO GLN LEU GLU SEQRES 5 F 132 GLU GLU ILE GLY LEU SER TRP ILE SER ASP THR GLU PHE SEQRES 6 F 132 LYS MET LYS LYS LYS ASN VAL ALA LEU VAL MET GLY ILE SEQRES 7 F 132 LYS LEU ASN THR LEU ASN VAL ASN LEU ARG ASP LEU ALA SEQRES 8 F 132 PHE GLU GLN LEU GLN HIS ASP LYS GLY GLY TRP THR GLN SEQRES 9 F 132 TRP LYS ARG SER GLY PHE THR ARG ASN SER VAL PHE GLU SEQRES 10 F 132 ASP PRO THR GLN ASN ASP SER PRO MET HIS HIS HIS HIS SEQRES 11 F 132 HIS HIS SEQRES 1 V 132 MET ASP SER ASN ASP LEU GLU ALA SER PHE THR SER ARG SEQRES 2 V 132 LEU PRO PRO GLU ILE VAL ALA ALA LEU LYS ARG LYS SER SEQRES 3 V 132 SER ARG ASP PRO ASN SER ARG PHE PRO ARG LYS LEU HIS SEQRES 4 V 132 MET LEU LEU THR TYR LEU ALA SER ASN PRO GLN LEU GLU SEQRES 5 V 132 GLU GLU ILE GLY LEU SER TRP ILE SER ASP THR GLU PHE SEQRES 6 V 132 LYS MET LYS LYS LYS ASN VAL ALA LEU VAL MET GLY ILE SEQRES 7 V 132 LYS LEU ASN THR LEU ASN VAL ASN LEU ARG ASP LEU ALA SEQRES 8 V 132 PHE GLU GLN LEU GLN HIS ASP LYS GLY GLY TRP THR GLN SEQRES 9 V 132 TRP LYS ARG SER GLY PHE THR ARG ASN SER VAL PHE GLU SEQRES 10 V 132 ASP PRO THR GLN ASN ASP SER PRO MET HIS HIS HIS HIS SEQRES 11 V 132 HIS HIS SEQRES 1 M 132 MET ASP SER ASN ASP LEU GLU ALA SER PHE THR SER ARG SEQRES 2 M 132 LEU PRO PRO GLU ILE VAL ALA ALA LEU LYS ARG LYS SER SEQRES 3 M 132 SER ARG ASP PRO ASN SER ARG PHE PRO ARG LYS LEU HIS SEQRES 4 M 132 MET LEU LEU THR TYR LEU ALA SER ASN PRO GLN LEU GLU SEQRES 5 M 132 GLU GLU ILE GLY LEU SER TRP ILE SER ASP THR GLU PHE SEQRES 6 M 132 LYS MET LYS LYS LYS ASN VAL ALA LEU VAL MET GLY ILE SEQRES 7 M 132 LYS LEU ASN THR LEU ASN VAL ASN LEU ARG ASP LEU ALA SEQRES 8 M 132 PHE GLU GLN LEU GLN HIS ASP LYS GLY GLY TRP THR GLN SEQRES 9 M 132 TRP LYS ARG SER GLY PHE THR ARG ASN SER VAL PHE GLU SEQRES 10 M 132 ASP PRO THR GLN ASN ASP SER PRO MET HIS HIS HIS HIS SEQRES 11 M 132 HIS HIS SEQRES 1 O 132 MET ASP SER ASN ASP LEU GLU ALA SER PHE THR SER ARG SEQRES 2 O 132 LEU PRO PRO GLU ILE VAL ALA ALA LEU LYS ARG LYS SER SEQRES 3 O 132 SER ARG ASP PRO ASN SER ARG PHE PRO ARG LYS LEU HIS SEQRES 4 O 132 MET LEU LEU THR TYR LEU ALA SER ASN PRO GLN LEU GLU SEQRES 5 O 132 GLU GLU ILE GLY LEU SER TRP ILE SER ASP THR GLU PHE SEQRES 6 O 132 LYS MET LYS LYS LYS ASN VAL ALA LEU VAL MET GLY ILE SEQRES 7 O 132 LYS LEU ASN THR LEU ASN VAL ASN LEU ARG ASP LEU ALA SEQRES 8 O 132 PHE GLU GLN LEU GLN HIS ASP LYS GLY GLY TRP THR GLN SEQRES 9 O 132 TRP LYS ARG SER GLY PHE THR ARG ASN SER VAL PHE GLU SEQRES 10 O 132 ASP PRO THR GLN ASN ASP SER PRO MET HIS HIS HIS HIS SEQRES 11 O 132 HIS HIS HET SO4 V 599 5 HET SO4 O 299 5 HETNAM SO4 SULFATE ION FORMUL 15 SO4 2(O4 S 2-) HELIX 1 1 ASN U 4 LEU U 14 1 11 HELIX 2 2 PRO U 15 ARG U 24 1 10 HELIX 3 3 ARG U 33 ASN U 48 1 16 HELIX 4 4 ASN U 48 ILE U 55 1 8 HELIX 5 5 LYS U 68 MET U 76 1 9 HELIX 6 6 LYS U 79 LEU U 90 1 12 HELIX 7 7 SER P 3 LEU P 14 1 12 HELIX 8 8 PRO P 15 ARG P 24 1 10 HELIX 9 10 ARG P 33 ALA P 46 1 14 HELIX 10 11 ASN P 48 GLY P 56 1 9 HELIX 11 12 LYS P 68 MET P 76 1 9 HELIX 12 13 LYS P 79 LEU P 90 1 12 HELIX 13 14 ASN F 4 ARG F 13 1 10 HELIX 14 15 PRO F 15 ARG F 24 1 10 HELIX 15 16 ARG F 33 ALA F 46 1 14 HELIX 16 17 ASN F 48 GLY F 56 1 9 HELIX 17 18 LYS F 68 MET F 76 1 9 HELIX 18 19 LYS F 79 LEU F 90 1 12 HELIX 19 20 PHE V 10 LEU V 14 5 5 HELIX 20 21 PRO V 15 LEU V 22 1 8 HELIX 21 22 PHE V 34 ALA V 46 1 13 HELIX 22 23 GLN V 50 ILE V 55 1 6 HELIX 23 24 LYS V 68 GLY V 77 1 10 HELIX 24 25 LYS V 79 ASP V 89 1 11 HELIX 25 26 ASP M 2 LEU M 14 1 13 HELIX 26 27 PRO M 15 ARG M 24 1 10 HELIX 27 29 ARG M 33 ASN M 48 1 16 HELIX 28 30 ASN M 48 GLY M 56 1 9 HELIX 29 31 LYS M 69 MET M 76 1 8 HELIX 30 32 LYS M 79 LEU M 90 1 12 HELIX 31 33 PRO O 15 ARG O 24 1 10 HELIX 32 34 PRO O 35 ALA O 46 1 12 HELIX 33 35 ASN O 48 GLY O 56 1 9 HELIX 34 36 LYS O 68 GLY O 77 1 10 HELIX 35 37 LEU O 80 ASP O 89 1 10 SHEET 1 A 2 LEU U 57 TRP U 59 0 SHEET 2 A 2 GLU U 64 MET U 67 -1 O LYS U 66 N SER U 58 SHEET 1 B 3 LEU P 57 TRP P 59 0 SHEET 2 B 3 PHE P 65 MET P 67 -1 O LYS P 66 N SER P 58 SHEET 3 B 3 GLN P 104 TRP P 105 -1 O TRP P 105 N PHE P 65 SHEET 1 C 3 LEU F 57 TRP F 59 0 SHEET 2 C 3 PHE F 65 MET F 67 -1 O LYS F 66 N SER F 58 SHEET 3 C 3 GLU F 93 GLN F 94 -1 SHEET 1 D 2 LEU V 57 TRP V 59 0 SHEET 2 D 2 GLU V 64 MET V 67 -1 O LYS V 66 N SER V 58 SHEET 1 E 3 LEU M 57 TRP M 59 0 SHEET 2 E 3 PHE M 65 LYS M 68 -1 O LYS M 66 N SER M 58 SHEET 3 E 3 GLU M 93 GLN M 96 -1 SHEET 1 F 2 PHE M 110 THR M 111 0 SHEET 2 F 2 SER M 114 VAL M 115 -1 O SER M 114 N THR M 111 SHEET 1 G 2 LEU O 57 TRP O 59 0 SHEET 2 G 2 GLU O 64 MET O 67 -1 O LYS O 66 N SER O 58 SITE 1 AC1 3 LYS V 69 ASN V 84 HIS V 97 SITE 1 AC2 4 LYS O 69 LEU O 80 ASN O 84 HIS O 97 CRYST1 292.000 292.000 292.000 90.00 90.00 90.00 F 2 3 288 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003425 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003425 0.00000