HEADER DESIGNED PEPTIDE 29-OCT-97 1PSV TITLE COMPUTATIONALLY DESIGNED PEPTIDE WITH A BETA-BETA-ALPHA FOLD TITLE 2 SELECTION, NMR, 32 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PDA8D; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DESIGNED PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SEQUENCE SELECTED BY DEAD END ELIMINATION KEYWDS PROTEIN DESIGN, DEAD END ELIMINATION, BETA-BETA-ALPHA FOLD, SEQUENCE KEYWDS 2 OPTIMIZATION, DESIGNED PEPTIDE EXPDTA SOLUTION NMR NUMMDL 32 AUTHOR B.I.DAHIYAT,C.A.SARISKY,S.L.MAYO REVDAT 4 22-MAY-24 1PSV 1 REMARK REVDAT 3 02-MAR-22 1PSV 1 REMARK REVDAT 2 24-FEB-09 1PSV 1 VERSN REVDAT 1 28-JAN-98 1PSV 0 JRNL AUTH B.I.DAHIYAT,C.A.SARISKY,S.L.MAYO JRNL TITL DE NOVO PROTEIN DESIGN: TOWARDS FULLY AUTOMATED SEQUENCE JRNL TITL 2 SELECTION. JRNL REF J.MOL.BIOL. V. 273 789 1997 JRNL REFN ISSN 0022-2836 JRNL PMID 9367772 JRNL DOI 10.1006/JMBI.1997.1341 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.I.DAHIYAT,S.L.MAYO REMARK 1 TITL DE NOVO PROTEIN DESIGN: FULLY AUTOMATED SEQUENCE SELECTION REMARK 1 REF SCIENCE V. 278 82 1997 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SEE JRNL CITATION ABOVE. REMARK 4 REMARK 4 1PSV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175837. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 280 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS 600 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG, X-PLOR REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY REMARK 210 -SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 98 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 32 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO RESTRAINT VIOLATIONS GREATER REMARK 210 THAN 0.3 ANGSTROMS, RMS REMARK 210 DEVIATIONS FROM IDEALIZED BOND REMARK 210 LENGTHS < 0.01 A, AND RMS REMARK 210 DEVIATIONS FROM IDEALIZED ANGLES REMARK 210 AND IMPROPERS < 1.0 DEGREE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 4 64.86 -167.39 REMARK 500 1 LYS A 8 10.66 -159.65 REMARK 500 1 THR A 11 149.64 64.87 REMARK 500 1 THR A 24 46.57 -97.46 REMARK 500 2 TYR A 3 -176.04 -60.82 REMARK 500 2 THR A 4 -50.25 -170.23 REMARK 500 2 ALA A 5 132.11 63.69 REMARK 500 2 LYS A 8 8.89 -161.04 REMARK 500 2 THR A 11 146.80 65.71 REMARK 500 2 THR A 24 44.98 -98.03 REMARK 500 3 THR A 4 70.38 -155.90 REMARK 500 3 LYS A 8 9.28 -157.45 REMARK 500 3 THR A 11 148.09 65.34 REMARK 500 3 THR A 24 44.63 -94.10 REMARK 500 4 TYR A 3 -179.48 -63.82 REMARK 500 4 THR A 4 -47.40 -171.89 REMARK 500 4 ALA A 5 132.47 64.22 REMARK 500 4 LYS A 8 8.30 -160.17 REMARK 500 4 THR A 11 146.84 65.45 REMARK 500 4 THR A 24 47.26 -96.93 REMARK 500 5 THR A 4 -51.21 -168.46 REMARK 500 5 ALA A 5 133.88 61.74 REMARK 500 5 THR A 11 148.48 65.06 REMARK 500 5 THR A 24 47.83 -98.49 REMARK 500 5 PHE A 25 -46.58 -142.92 REMARK 500 6 THR A 4 -50.77 -161.53 REMARK 500 6 ALA A 5 135.77 63.90 REMARK 500 6 ILE A 7 -67.10 -120.65 REMARK 500 6 LYS A 8 10.89 -143.45 REMARK 500 6 THR A 11 150.10 64.70 REMARK 500 6 THR A 24 48.54 -97.36 REMARK 500 6 PHE A 25 -45.68 -137.69 REMARK 500 7 THR A 4 70.93 -174.44 REMARK 500 7 LYS A 8 -0.81 -145.05 REMARK 500 7 THR A 11 -23.25 83.36 REMARK 500 7 PHE A 12 116.32 53.15 REMARK 500 7 THR A 24 46.85 -100.68 REMARK 500 7 THR A 26 31.65 -146.81 REMARK 500 8 THR A 4 75.84 -158.30 REMARK 500 8 LYS A 8 7.12 -156.34 REMARK 500 8 THR A 11 129.79 64.68 REMARK 500 8 THR A 24 44.94 -101.86 REMARK 500 9 THR A 4 72.30 -155.25 REMARK 500 9 ILE A 7 -64.39 -120.74 REMARK 500 9 LYS A 8 10.02 -144.65 REMARK 500 9 THR A 11 152.09 64.84 REMARK 500 9 THR A 24 43.98 -99.47 REMARK 500 9 PHE A 25 28.44 -145.52 REMARK 500 10 THR A 11 149.00 64.24 REMARK 500 10 THR A 24 45.80 -97.96 REMARK 500 REMARK 500 THIS ENTRY HAS 199 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1PSV A 1 28 PDB 1PSV 1PSV 1 28 SEQRES 1 A 28 LYS PRO TYR THR ALA ARG ILE LYS GLY ARG THR PHE SER SEQRES 2 A 28 ASN GLU LYS GLU LEU ARG ASP PHE LEU GLU THR PHE THR SEQRES 3 A 28 GLY ARG HELIX 1 1 GLU A 15 GLU A 23 1 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1