data_1PWF
# 
_entry.id   1PWF 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.376 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1PWF         pdb_00001pwf 10.2210/pdb1pwf/pdb 
NDB   AD0030       ?            ?                   
RCSB  RCSB019634   ?            ?                   
WWPDB D_1000019634 ?            ?                   
# 
_pdbx_database_related.db_name        PDB 
_pdbx_database_related.db_id          1N1O 
_pdbx_database_related.details        
;Crystal Structure of a B-Form DNA Duplex Containing (L)-alpha-Threofuranosyl (3'-->2') Nucleosides: A Four-Carbon Sugar Is Easily Accommodated into the Backbone of DNA
;
_pdbx_database_related.content_type   unspecified 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1PWF 
_pdbx_database_status.recvd_initial_deposition_date   2003-07-01 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Pallan, P.S.'      1 
'Wilds, C.J.'       2 
'Wawrzak, Z.'       3 
'Krishnamurthy, R.' 4 
'Eschenmoser, A.'   5 
'Egli, M.'          6 
# 
_citation.id                        primary 
_citation.title                     'Why does TNA cross-pair more strongly with RNA than with DNA? an answer from X-ray analysis.' 
_citation.journal_abbrev            ANGEW.CHEM.INT.ED.ENGL. 
_citation.journal_volume            42 
_citation.page_first                5893 
_citation.page_last                 5895 
_citation.year                      2003 
_citation.journal_id_ASTM           ACIEAY 
_citation.country                   GE 
_citation.journal_id_ISSN           0570-0833 
_citation.journal_id_CSD            0179 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   14673929 
_citation.pdbx_database_id_DOI      10.1002/anie.200352553 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Pallan, P.S.'      1 ? 
primary 'Wilds, C.J.'       2 ? 
primary 'Wawrzak, Z.'       3 ? 
primary 'Krishnamurthy, R.' 4 ? 
primary 'Eschenmoser, A.'   5 ? 
primary 'Egli, M.'          6 ? 
# 
_cell.entry_id           1PWF 
_cell.length_a           24.429 
_cell.length_b           44.522 
_cell.length_c           47.332 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1PWF 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.Int_Tables_number                19 
_symmetry.cell_setting                     ? 
_symmetry.space_group_name_Hall            ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn "5'-D(*GP*CP*GP*TP*AP*(2MU)P*(FA2)P*CP*GP*C)-3'" 3061.004 2   ? ? ? 
;A-DNA decamer duplex with TNA-adenine and 2'-methoxy-thymine modifications
;
2 non-polymer syn SPERMINE                                         202.340  1   ? ? ? ? 
3 water       nat water                                            18.015   109 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       '(DG)(DC)(DG)(DT)(DA)(2MU)(FA2)(DC)(DG)(DC)' 
_entity_poly.pdbx_seq_one_letter_code_can   GCGTAUACGC 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DG  n 
1 2  DC  n 
1 3  DG  n 
1 4  DT  n 
1 5  DA  n 
1 6  2MU n 
1 7  FA2 n 
1 8  DC  n 
1 9  DG  n 
1 10 DC  n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    ? 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       ? 
_pdbx_entity_src_syn.details                'chemically synthesized oligonucleotide' 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1PWF 
_struct_ref.pdbx_db_accession          1PWF 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1PWF A 1 ? 10 ? 1PWF 1   ? 10  ? 1   10  
2 1 1PWF B 1 ? 10 ? 1PWF 111 ? 120 ? 111 120 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
2MU 'RNA linking' n "2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE"                                        ? 'C11 H17 N2 O9 P' 352.234 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE"                                           ? 'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"                                            ? 'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"                                           ? 'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"                                                   ? 'C10 H15 N2 O8 P' 322.208 
FA2 'RNA linking' n '5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXYTETRAHYDROFURAN-3-YL DIHYDROGEN PHOSPHATE' ? 'C9 H12 N5 O6 P'  317.195 
HOH non-polymer   . WATER                                                                          ? 'H2 O'            18.015  
SPM non-polymer   . SPERMINE                                                                       ? 'C10 H26 N4'      202.340 
# 
_exptl.entry_id          1PWF 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.03 
_exptl_crystal.density_percent_sol   39.35 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            291.0 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6.0 
_exptl_crystal_grow.pdbx_details    
;Sodium Cacodylate, Sodium Chloride, Barium Chloride, Spermine tetrahydrochloride, 2-methyl-2,4-pentanediol, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291.0K
;
_exptl_crystal_grow.pdbx_pH_range   . 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1  1 'Sodium Cacodylate'           ? ? ? 
1 2  1 'Sodium Chloride'             ? ? ? 
1 3  1 'Barium Chloride'             ? ? ? 
1 4  1 'Spermine tetrahydrochloride' ? ? ? 
1 5  1 2-methyl-2,4-pentanediol      ? ? ? 
1 6  1 H2O                           ? ? ? 
1 7  2 'Sodium Cacodylate'           ? ? ? 
1 8  2 'Sodium Chloride'             ? ? ? 
1 9  2 'Barium Chloride'             ? ? ? 
1 10 2 H2O                           ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           120 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               CCD 
_diffrn_detector.type                   MARRESEARCH 
_diffrn_detector.pdbx_collection_date   2002-07-05 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.0000 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'APS BEAMLINE 5ID-B' 
_diffrn_source.pdbx_synchrotron_site       APS 
_diffrn_source.pdbx_synchrotron_beamline   5ID-B 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        1.0000 
# 
_reflns.entry_id                     1PWF 
_reflns.observed_criterion_sigma_F   0.0 
_reflns.observed_criterion_sigma_I   0.0 
_reflns.d_resolution_high            1.16 
_reflns.d_resolution_low             30.0 
_reflns.number_all                   ? 
_reflns.number_obs                   18354 
_reflns.percent_possible_obs         98.8 
_reflns.pdbx_Rmerge_I_obs            0.062 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.R_free_details               ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_reflns_shell.d_res_high             1.16 
_reflns_shell.d_res_low              1.20 
_reflns_shell.percent_possible_all   94.5 
_reflns_shell.Rmerge_I_obs           0.297 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    ? 
_reflns_shell.pdbx_redundancy        ? 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      1704 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
_reflns_shell.pdbx_diffrn_id         ? 
_reflns_shell.pdbx_ordinal           1 
# 
_refine.entry_id                                 1PWF 
_refine.ls_d_res_high                            1.16 
_refine.ls_d_res_low                             20.0 
_refine.pdbx_ls_sigma_F                          0.0 
_refine.pdbx_ls_sigma_I                          0.0 
_refine.ls_number_reflns_all                     18289 
_refine.ls_number_reflns_obs                     17371 
_refine.ls_number_reflns_R_free                  918 
_refine.ls_percent_reflns_obs                    100.0 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_obs                          0.133 
_refine.ls_R_factor_R_work                       0.133 
_refine.ls_R_factor_R_free                       0.188 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_starting_model                      'PDB ENTRY 1DPL' 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_stereochemistry_target_values       
;L. Clowney et al., Geometric Parameters in Nucleic Acids: Nitrogenous Bases, J. Am. Chem. Soc. (1996) 118, 509-518; A. Gelbin et al., Geometric Parameters in Nucleic Acids: Sugar and Phosphate Constituents, J. Am. Chem. Soc. (1996) 118, 519-529; G. Parkinson et al., New Parameters for the Refinement of Nucleic Acid-Containing Structures, Acta Cryst. (1996) D52, 57-64.
;
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_bsol                 ? 
_refine.solvent_model_param_ksol                 ? 
_refine.occupancy_max                            ? 
_refine.occupancy_min                            ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.details                                  ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.overall_SU_B                             ? 
_refine.overall_SU_ML                            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   622 
_refine_hist.pdbx_number_atoms_ligand         14 
_refine_hist.number_atoms_solvent             109 
_refine_hist.number_atoms_total               745 
_refine_hist.d_res_high                       1.16 
_refine_hist.d_res_low                        20.0 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
s_bond_d              0.017 ? ? ? 'X-RAY DIFFRACTION' ? 
s_angle_d             0.026 ? ? ? 'X-RAY DIFFRACTION' ? 
s_non_zero_chiral_vol 0.034 ? ? ? 'X-RAY DIFFRACTION' ? 
s_from_restr_planes   0.086 ? ? ? 'X-RAY DIFFRACTION' ? 
s_similar_dist        0.040 ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_struct.entry_id                  1PWF 
_struct.title                     'One Sugar Pucker Fits All: Pairing Versatility Despite Conformational Uniformity in TNA' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1PWF 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            
'A-DNA, Hydrogen Bonding, Nucleic Acid Etiology, Tetrose, Four Carbon Sugar, Nucleic Acid Analogue, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 3 ? 
E N N 3 ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A DA  5  "O3'" ? ? ? 1_555 A 2MU 6  P  ? ? A DA  5   A 2MU 6   1_555 ? ? ? ? ? ? ?            1.604 ? ? 
covale2  covale both ? A 2MU 6  "O3'" ? ? ? 1_555 A FA2 7  P  ? ? A 2MU 6   A FA2 7   1_555 ? ? ? ? ? ? ?            1.598 ? ? 
covale3  covale one  ? A FA2 7  "O2'" ? ? ? 1_555 A DC  8  P  ? ? A FA2 7   A DC  8   1_555 ? ? ? ? ? ? ?            1.602 ? ? 
covale4  covale both ? B DA  5  "O3'" ? ? ? 1_555 B 2MU 6  P  ? ? B DA  115 B 2MU 116 1_555 ? ? ? ? ? ? ?            1.587 ? ? 
covale5  covale both ? B 2MU 6  "O3'" ? ? ? 1_555 B FA2 7  P  ? ? B 2MU 116 B FA2 117 1_555 ? ? ? ? ? ? ?            1.594 ? ? 
covale6  covale one  ? B FA2 7  "O2'" ? ? ? 1_555 B DC  8  P  ? ? B FA2 117 B DC  118 1_555 ? ? ? ? ? ? ?            1.640 ? ? 
hydrog1  hydrog ?    ? A DG  1  N1    ? ? ? 1_555 B DC  10 N3 ? ? A DG  1   B DC  120 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?    ? A DG  1  N2    ? ? ? 1_555 B DC  10 O2 ? ? A DG  1   B DC  120 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?    ? A DG  1  O6    ? ? ? 1_555 B DC  10 N4 ? ? A DG  1   B DC  120 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?    ? A DC  2  N3    ? ? ? 1_555 B DG  9  N1 ? ? A DC  2   B DG  119 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?    ? A DC  2  N4    ? ? ? 1_555 B DG  9  O6 ? ? A DC  2   B DG  119 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?    ? A DC  2  O2    ? ? ? 1_555 B DG  9  N2 ? ? A DC  2   B DG  119 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?    ? A DG  3  N1    ? ? ? 1_555 B DC  8  N3 ? ? A DG  3   B DC  118 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?    ? A DG  3  N2    ? ? ? 1_555 B DC  8  O2 ? ? A DG  3   B DC  118 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?    ? A DG  3  O6    ? ? ? 1_555 B DC  8  N4 ? ? A DG  3   B DC  118 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?    ? A DT  4  N3    ? ? ? 1_555 B FA2 7  N1 ? ? A DT  4   B FA2 117 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?    ? A DT  4  O4    ? ? ? 1_555 B FA2 7  N6 ? ? A DT  4   B FA2 117 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?    ? A DA  5  N1    ? ? ? 1_555 B 2MU 6  N3 ? ? A DA  5   B 2MU 116 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?    ? A DA  5  N6    ? ? ? 1_555 B 2MU 6  O4 ? ? A DA  5   B 2MU 116 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?    ? A 2MU 6  N3    ? ? ? 1_555 B DA  5  N1 ? ? A 2MU 6   B DA  115 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?    ? A 2MU 6  O4    ? ? ? 1_555 B DA  5  N6 ? ? A 2MU 6   B DA  115 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?    ? A FA2 7  N1    ? ? ? 1_555 B DT  4  N3 ? ? A FA2 7   B DT  114 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?    ? A FA2 7  N6    ? ? ? 1_555 B DT  4  O4 ? ? A FA2 7   B DT  114 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?    ? A DC  8  N3    ? ? ? 1_555 B DG  3  N1 ? ? A DC  8   B DG  113 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ?    ? A DC  8  N4    ? ? ? 1_555 B DG  3  O6 ? ? A DC  8   B DG  113 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ?    ? A DC  8  O2    ? ? ? 1_555 B DG  3  N2 ? ? A DC  8   B DG  113 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ?    ? A DG  9  N1    ? ? ? 1_555 B DC  2  N3 ? ? A DG  9   B DC  112 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ?    ? A DG  9  N2    ? ? ? 1_555 B DC  2  O2 ? ? A DG  9   B DC  112 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ?    ? A DG  9  O6    ? ? ? 1_555 B DC  2  N4 ? ? A DG  9   B DC  112 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ?    ? A DC  10 N3    ? ? ? 1_555 B DG  1  N1 ? ? A DC  10  B DG  111 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog25 hydrog ?    ? A DC  10 N4    ? ? ? 1_555 B DG  1  O6 ? ? A DC  10  B DG  111 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog26 hydrog ?    ? A DC  10 O2    ? ? ? 1_555 B DG  1  N2 ? ? A DC  10  B DG  111 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
hydrog ? ? 
# 
_struct_site.id                   AC1 
_struct_site.pdbx_evidence_code   Software 
_struct_site.pdbx_auth_asym_id    B 
_struct_site.pdbx_auth_comp_id    SPM 
_struct_site.pdbx_auth_seq_id     201 
_struct_site.pdbx_auth_ins_code   ? 
_struct_site.pdbx_num_residues    11 
_struct_site.details              'BINDING SITE FOR RESIDUE SPM B 201' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 11 DG  A 9 ? DG  A 9   . ? 4_466 ? 
2  AC1 11 HOH D . ? HOH A 504 . ? 4_466 ? 
3  AC1 11 HOH D . ? HOH A 520 . ? 4_466 ? 
4  AC1 11 HOH D . ? HOH A 521 . ? 2_565 ? 
5  AC1 11 HOH D . ? HOH A 522 . ? 2_565 ? 
6  AC1 11 DG  B 3 ? DG  B 113 . ? 1_555 ? 
7  AC1 11 DT  B 4 ? DT  B 114 . ? 1_555 ? 
8  AC1 11 DG  B 9 ? DG  B 119 . ? 2_465 ? 
9  AC1 11 HOH E . ? HOH B 534 . ? 1_555 ? 
10 AC1 11 HOH E . ? HOH B 573 . ? 1_555 ? 
11 AC1 11 HOH E . ? HOH B 577 . ? 1_555 ? 
# 
_database_PDB_matrix.entry_id          1PWF 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    1PWF 
_atom_sites.fract_transf_matrix[1][1]   0.040935 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.022461 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.021127 
_atom_sites.fract_transf_vector[1]      0.000000 
_atom_sites.fract_transf_vector[2]      0.000000 
_atom_sites.fract_transf_vector[3]      0.000000 
# 
loop_
_atom_type.symbol 
C 
H 
N 
O 
P 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DG  1  1   1   DG  G   A . n 
A 1 2  DC  2  2   2   DC  C   A . n 
A 1 3  DG  3  3   3   DG  G   A . n 
A 1 4  DT  4  4   4   DT  T   A . n 
A 1 5  DA  5  5   5   DA  A   A . n 
A 1 6  2MU 6  6   6   2MU 2MU A . n 
A 1 7  FA2 7  7   7   FA2 FA2 A . n 
A 1 8  DC  8  8   8   DC  C   A . n 
A 1 9  DG  9  9   9   DG  G   A . n 
A 1 10 DC  10 10  10  DC  C   A . n 
B 1 1  DG  1  111 111 DG  G   B . n 
B 1 2  DC  2  112 112 DC  C   B . n 
B 1 3  DG  3  113 113 DG  G   B . n 
B 1 4  DT  4  114 114 DT  T   B . n 
B 1 5  DA  5  115 115 DA  A   B . n 
B 1 6  2MU 6  116 116 2MU 2MU B . n 
B 1 7  FA2 7  117 117 FA2 FA2 B . n 
B 1 8  DC  8  118 118 DC  C   B . n 
B 1 9  DG  9  119 119 DG  G   B . n 
B 1 10 DC  10 120 120 DC  C   B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 SPM 1  201 201 SPM SPM B . 
D 3 HOH 1  501 501 HOH HOH A . 
D 3 HOH 2  504 504 HOH HOH A . 
D 3 HOH 3  506 506 HOH HOH A . 
D 3 HOH 4  509 509 HOH HOH A . 
D 3 HOH 5  512 512 HOH HOH A . 
D 3 HOH 6  513 513 HOH HOH A . 
D 3 HOH 7  516 516 HOH HOH A . 
D 3 HOH 8  517 517 HOH HOH A . 
D 3 HOH 9  520 520 HOH HOH A . 
D 3 HOH 10 521 521 HOH HOH A . 
D 3 HOH 11 522 522 HOH HOH A . 
D 3 HOH 12 526 526 HOH HOH A . 
D 3 HOH 13 529 529 HOH HOH A . 
D 3 HOH 14 531 531 HOH HOH A . 
D 3 HOH 15 532 532 HOH HOH A . 
D 3 HOH 16 535 535 HOH HOH A . 
D 3 HOH 17 536 536 HOH HOH A . 
D 3 HOH 18 539 539 HOH HOH A . 
D 3 HOH 19 541 541 HOH HOH A . 
D 3 HOH 20 542 542 HOH HOH A . 
D 3 HOH 21 543 543 HOH HOH A . 
D 3 HOH 22 544 544 HOH HOH A . 
D 3 HOH 23 547 547 HOH HOH A . 
D 3 HOH 24 548 548 HOH HOH A . 
D 3 HOH 25 549 549 HOH HOH A . 
D 3 HOH 26 552 552 HOH HOH A . 
D 3 HOH 27 553 553 HOH HOH A . 
D 3 HOH 28 555 555 HOH HOH A . 
D 3 HOH 29 556 556 HOH HOH A . 
D 3 HOH 30 557 557 HOH HOH A . 
D 3 HOH 31 560 560 HOH HOH A . 
D 3 HOH 32 561 561 HOH HOH A . 
D 3 HOH 33 562 562 HOH HOH A . 
D 3 HOH 34 563 563 HOH HOH A . 
D 3 HOH 35 565 565 HOH HOH A . 
D 3 HOH 36 567 567 HOH HOH A . 
D 3 HOH 37 568 568 HOH HOH A . 
D 3 HOH 38 570 570 HOH HOH A . 
D 3 HOH 39 572 572 HOH HOH A . 
D 3 HOH 40 576 576 HOH HOH A . 
D 3 HOH 41 579 579 HOH HOH A . 
D 3 HOH 42 581 581 HOH HOH A . 
D 3 HOH 43 582 582 HOH HOH A . 
D 3 HOH 44 584 584 HOH HOH A . 
D 3 HOH 45 588 588 HOH HOH A . 
D 3 HOH 46 590 590 HOH HOH A . 
D 3 HOH 47 592 592 HOH HOH A . 
D 3 HOH 48 593 593 HOH HOH A . 
D 3 HOH 49 596 596 HOH HOH A . 
D 3 HOH 50 597 597 HOH HOH A . 
D 3 HOH 51 598 598 HOH HOH A . 
D 3 HOH 52 599 599 HOH HOH A . 
D 3 HOH 53 600 600 HOH HOH A . 
D 3 HOH 54 602 602 HOH HOH A . 
D 3 HOH 55 603 603 HOH HOH A . 
D 3 HOH 56 604 604 HOH HOH A . 
D 3 HOH 57 606 606 HOH HOH A . 
D 3 HOH 58 607 607 HOH HOH A . 
D 3 HOH 59 608 608 HOH HOH A . 
D 3 HOH 60 609 609 HOH HOH A . 
E 3 HOH 1  502 502 HOH HOH B . 
E 3 HOH 2  503 503 HOH HOH B . 
E 3 HOH 3  505 505 HOH HOH B . 
E 3 HOH 4  507 507 HOH HOH B . 
E 3 HOH 5  508 508 HOH HOH B . 
E 3 HOH 6  510 510 HOH HOH B . 
E 3 HOH 7  511 511 HOH HOH B . 
E 3 HOH 8  514 514 HOH HOH B . 
E 3 HOH 9  515 515 HOH HOH B . 
E 3 HOH 10 518 518 HOH HOH B . 
E 3 HOH 11 519 519 HOH HOH B . 
E 3 HOH 12 523 523 HOH HOH B . 
E 3 HOH 13 524 524 HOH HOH B . 
E 3 HOH 14 525 525 HOH HOH B . 
E 3 HOH 15 527 527 HOH HOH B . 
E 3 HOH 16 528 528 HOH HOH B . 
E 3 HOH 17 530 530 HOH HOH B . 
E 3 HOH 18 533 533 HOH HOH B . 
E 3 HOH 19 534 534 HOH HOH B . 
E 3 HOH 20 537 537 HOH HOH B . 
E 3 HOH 21 538 538 HOH HOH B . 
E 3 HOH 22 540 540 HOH HOH B . 
E 3 HOH 23 545 545 HOH HOH B . 
E 3 HOH 24 546 546 HOH HOH B . 
E 3 HOH 25 550 550 HOH HOH B . 
E 3 HOH 26 551 551 HOH HOH B . 
E 3 HOH 27 554 554 HOH HOH B . 
E 3 HOH 28 558 558 HOH HOH B . 
E 3 HOH 29 559 559 HOH HOH B . 
E 3 HOH 30 564 564 HOH HOH B . 
E 3 HOH 31 566 566 HOH HOH B . 
E 3 HOH 32 569 569 HOH HOH B . 
E 3 HOH 33 571 571 HOH HOH B . 
E 3 HOH 34 573 573 HOH HOH B . 
E 3 HOH 35 574 574 HOH HOH B . 
E 3 HOH 36 575 575 HOH HOH B . 
E 3 HOH 37 577 577 HOH HOH B . 
E 3 HOH 38 578 578 HOH HOH B . 
E 3 HOH 39 580 580 HOH HOH B . 
E 3 HOH 40 583 583 HOH HOH B . 
E 3 HOH 41 585 585 HOH HOH B . 
E 3 HOH 42 586 586 HOH HOH B . 
E 3 HOH 43 587 587 HOH HOH B . 
E 3 HOH 44 589 589 HOH HOH B . 
E 3 HOH 45 591 591 HOH HOH B . 
E 3 HOH 46 594 594 HOH HOH B . 
E 3 HOH 47 595 595 HOH HOH B . 
E 3 HOH 48 601 601 HOH HOH B . 
E 3 HOH 49 605 605 HOH HOH B . 
# 
loop_
_pdbx_struct_mod_residue.id 
_pdbx_struct_mod_residue.label_asym_id 
_pdbx_struct_mod_residue.label_comp_id 
_pdbx_struct_mod_residue.label_seq_id 
_pdbx_struct_mod_residue.auth_asym_id 
_pdbx_struct_mod_residue.auth_comp_id 
_pdbx_struct_mod_residue.auth_seq_id 
_pdbx_struct_mod_residue.PDB_ins_code 
_pdbx_struct_mod_residue.parent_comp_id 
_pdbx_struct_mod_residue.details 
1 A 2MU 6 A 2MU 6   ? U  "2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE" 
2 A FA2 7 A FA2 7   ? DA ?                                       
3 B 2MU 6 B 2MU 116 ? U  "2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE" 
4 B FA2 7 B FA2 117 ? DA ?                                       
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2004-07-13 
2 'Structure model' 1 1 2008-04-29 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2017-10-11 
5 'Structure model' 1 4 2019-07-24 
6 'Structure model' 1 5 2023-08-16 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1  2 'Structure model' 'Version format compliance' 
2  3 'Structure model' 'Version format compliance' 
3  4 'Structure model' Advisory                    
4  4 'Structure model' 'Refinement description'    
5  5 'Structure model' 'Data collection'           
6  5 'Structure model' 'Derived calculations'      
7  5 'Structure model' 'Refinement description'    
8  6 'Structure model' Advisory                    
9  6 'Structure model' 'Data collection'           
10 6 'Structure model' 'Database references'       
11 6 'Structure model' 'Derived calculations'      
12 6 'Structure model' 'Refinement description'    
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1  4 'Structure model' pdbx_unobs_or_zero_occ_residues 
2  4 'Structure model' pdbx_validate_polymer_linkage   
3  4 'Structure model' software                        
4  5 'Structure model' software                        
5  5 'Structure model' struct_conn                     
6  6 'Structure model' chem_comp_atom                  
7  6 'Structure model' chem_comp_bond                  
8  6 'Structure model' database_2                      
9  6 'Structure model' pdbx_initial_refinement_model   
10 6 'Structure model' pdbx_unobs_or_zero_occ_residues 
11 6 'Structure model' struct_conn                     
12 6 'Structure model' struct_site                     
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  4 'Structure model' '_software.classification'            
2  4 'Structure model' '_software.name'                      
3  5 'Structure model' '_software.classification'            
4  5 'Structure model' '_software.name'                      
5  5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 
6  6 'Structure model' '_database_2.pdbx_DOI'                
7  6 'Structure model' '_database_2.pdbx_database_accession' 
8  6 'Structure model' '_struct_conn.pdbx_dist_value'        
9  6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 
10 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id'     
11 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id'     
12 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id'      
13 6 'Structure model' '_struct_conn.ptnr1_label_asym_id'    
14 6 'Structure model' '_struct_conn.ptnr1_label_atom_id'    
15 6 'Structure model' '_struct_conn.ptnr1_label_comp_id'    
16 6 'Structure model' '_struct_conn.ptnr1_label_seq_id'     
17 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id'     
18 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id'     
19 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id'      
20 6 'Structure model' '_struct_conn.ptnr2_label_asym_id'    
21 6 'Structure model' '_struct_conn.ptnr2_label_comp_id'    
22 6 'Structure model' '_struct_conn.ptnr2_label_seq_id'     
23 6 'Structure model' '_struct_site.pdbx_auth_asym_id'      
24 6 'Structure model' '_struct_site.pdbx_auth_comp_id'      
25 6 'Structure model' '_struct_site.pdbx_auth_seq_id'       
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
SHELXL-97 refinement       . ? 1 
SCALEPACK 'data scaling'   . ? 2 
CNS       refinement       . ? 3 
XDS       'data scaling'   . ? 4 
XDS       'data reduction' . ? 5 
CNS       phasing          . ? 6 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1  1 "C3'" A DG 1   ? ? "C2'" A DG 1   ? ? 1.459 1.516 -0.057 0.008 N 
2  1 "C3'" A DC 2   ? ? "C2'" A DC 2   ? ? 1.448 1.516 -0.068 0.008 N 
3  1 "C2'" A DC 2   ? ? "C1'" A DC 2   ? ? 1.454 1.518 -0.064 0.010 N 
4  1 "C2'" A DG 3   ? ? "C1'" A DG 3   ? ? 1.437 1.518 -0.081 0.010 N 
5  1 "O4'" A DG 3   ? ? "C1'" A DG 3   ? ? 1.500 1.420 0.080  0.011 N 
6  1 "C2'" A DT 4   ? ? "C1'" A DT 4   ? ? 1.445 1.518 -0.073 0.010 N 
7  1 "C3'" B DC 112 ? ? "C2'" B DC 112 ? ? 1.466 1.516 -0.050 0.008 N 
8  1 "C3'" B DG 119 ? ? "C2'" B DG 119 ? ? 1.461 1.516 -0.055 0.008 N 
9  1 "C2'" B DG 119 ? ? "C1'" B DG 119 ? ? 1.422 1.518 -0.096 0.010 N 
10 1 "O4'" B DG 119 ? ? "C1'" B DG 119 ? ? 1.499 1.420 0.079  0.011 N 
11 1 "C3'" B DC 120 ? ? "C2'" B DC 120 ? ? 1.439 1.516 -0.077 0.008 N 
12 1 "C2'" B DC 120 ? ? "C1'" B DC 120 ? ? 1.437 1.518 -0.081 0.010 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "O4'" A DG 1   ? ? "C4'" A DG 1   ? ? "C3'" A DG 1   ? ? 101.95 104.50 -2.55 0.40 N 
2  1 N3    A DG 1   ? ? C4    A DG 1   ? ? C5    A DG 1   ? ? 125.37 128.60 -3.23 0.50 N 
3  1 "O4'" A DG 3   ? ? "C1'" A DG 3   ? ? "C2'" A DG 3   ? ? 110.33 106.80 3.53  0.50 N 
4  1 "O4'" A DG 3   ? ? "C1'" A DG 3   ? ? N9    A DG 3   ? ? 101.17 108.00 -6.83 0.70 N 
5  1 "O4'" A DG 9   ? ? "C1'" A DG 9   ? ? N9    A DG 9   ? ? 103.40 108.00 -4.60 0.70 N 
6  1 C5    A DG 9   ? ? C6    A DG 9   ? ? N1    A DG 9   ? ? 114.74 111.50 3.24  0.50 N 
7  1 "O4'" B DG 111 ? ? "C1'" B DG 111 ? ? N9    B DG 111 ? ? 103.09 108.00 -4.91 0.70 N 
8  1 "O4'" B DT 114 ? ? "C4'" B DT 114 ? ? "C3'" B DT 114 ? ? 100.46 104.50 -4.04 0.40 N 
9  1 "O4'" B DA 115 ? ? "C4'" B DA 115 ? ? "C3'" B DA 115 ? ? 101.24 104.50 -3.26 0.40 N 
10 1 "O4'" B DG 119 ? ? "C1'" B DG 119 ? ? N9    B DG 119 ? ? 102.26 108.00 -5.74 0.70 N 
11 1 C4    B DG 119 ? ? C5    B DG 119 ? ? N7    B DG 119 ? ? 108.38 110.80 -2.42 0.40 N 
12 1 N3    B DG 119 ? ? C2    B DG 119 ? ? N2    B DG 119 ? ? 124.25 119.90 4.35  0.70 N 
13 1 "O4'" B DC 120 ? ? "C1'" B DC 120 ? ? N1    B DC 120 ? ? 102.60 108.00 -5.40 0.70 N 
14 1 C6    B DC 120 ? ? N1    B DC 120 ? ? C2    B DC 120 ? ? 123.02 120.30 2.72  0.40 N 
15 1 C4    B DC 120 ? ? C5    B DC 120 ? ? C6    B DC 120 ? ? 121.88 117.40 4.48  0.50 N 
16 1 C5    B DC 120 ? ? C6    B DC 120 ? ? N1    B DC 120 ? ? 115.62 121.00 -5.38 0.50 N 
# 
_pdbx_unobs_or_zero_occ_residues.id               1 
_pdbx_unobs_or_zero_occ_residues.PDB_model_num    1 
_pdbx_unobs_or_zero_occ_residues.polymer_flag     N 
_pdbx_unobs_or_zero_occ_residues.occupancy_flag   0 
_pdbx_unobs_or_zero_occ_residues.auth_asym_id     B 
_pdbx_unobs_or_zero_occ_residues.auth_comp_id     HOH 
_pdbx_unobs_or_zero_occ_residues.auth_seq_id      589 
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code     ? 
_pdbx_unobs_or_zero_occ_residues.label_asym_id    E 
_pdbx_unobs_or_zero_occ_residues.label_comp_id    HOH 
_pdbx_unobs_or_zero_occ_residues.label_seq_id     ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
2MU N1     N N N 1   
2MU C2     C N N 2   
2MU N3     N N N 3   
2MU C4     C N N 4   
2MU C5     C N N 5   
2MU C5M    C N N 6   
2MU C6     C N N 7   
2MU O2     O N N 8   
2MU O4     O N N 9   
2MU "C1'"  C N R 10  
2MU "C2'"  C N R 11  
2MU "O2'"  O N N 12  
2MU "C3'"  C N R 13  
2MU "C4'"  C N R 14  
2MU "O3'"  O N N 15  
2MU "O4'"  O N N 16  
2MU "C5'"  C N N 17  
2MU "O5'"  O N N 18  
2MU "C6'"  C N N 19  
2MU P      P N N 20  
2MU OP1    O N N 21  
2MU OP2    O N N 22  
2MU OP3    O N N 23  
2MU HN3    H N N 24  
2MU HM51   H N N 25  
2MU HM52   H N N 26  
2MU HM53   H N N 27  
2MU H6     H N N 28  
2MU "H1'"  H N N 29  
2MU "H2'"  H N N 30  
2MU "H3'"  H N N 31  
2MU "H4'"  H N N 32  
2MU "HO3'" H N N 33  
2MU "H5'"  H N N 34  
2MU "H5''" H N N 35  
2MU "H6'1" H N N 36  
2MU "H6'2" H N N 37  
2MU "H6'3" H N N 38  
2MU HOP2   H N N 39  
2MU HOP3   H N N 40  
DA  OP3    O N N 41  
DA  P      P N N 42  
DA  OP1    O N N 43  
DA  OP2    O N N 44  
DA  "O5'"  O N N 45  
DA  "C5'"  C N N 46  
DA  "C4'"  C N R 47  
DA  "O4'"  O N N 48  
DA  "C3'"  C N S 49  
DA  "O3'"  O N N 50  
DA  "C2'"  C N N 51  
DA  "C1'"  C N R 52  
DA  N9     N Y N 53  
DA  C8     C Y N 54  
DA  N7     N Y N 55  
DA  C5     C Y N 56  
DA  C6     C Y N 57  
DA  N6     N N N 58  
DA  N1     N Y N 59  
DA  C2     C Y N 60  
DA  N3     N Y N 61  
DA  C4     C Y N 62  
DA  HOP3   H N N 63  
DA  HOP2   H N N 64  
DA  "H5'"  H N N 65  
DA  "H5''" H N N 66  
DA  "H4'"  H N N 67  
DA  "H3'"  H N N 68  
DA  "HO3'" H N N 69  
DA  "H2'"  H N N 70  
DA  "H2''" H N N 71  
DA  "H1'"  H N N 72  
DA  H8     H N N 73  
DA  H61    H N N 74  
DA  H62    H N N 75  
DA  H2     H N N 76  
DC  OP3    O N N 77  
DC  P      P N N 78  
DC  OP1    O N N 79  
DC  OP2    O N N 80  
DC  "O5'"  O N N 81  
DC  "C5'"  C N N 82  
DC  "C4'"  C N R 83  
DC  "O4'"  O N N 84  
DC  "C3'"  C N S 85  
DC  "O3'"  O N N 86  
DC  "C2'"  C N N 87  
DC  "C1'"  C N R 88  
DC  N1     N N N 89  
DC  C2     C N N 90  
DC  O2     O N N 91  
DC  N3     N N N 92  
DC  C4     C N N 93  
DC  N4     N N N 94  
DC  C5     C N N 95  
DC  C6     C N N 96  
DC  HOP3   H N N 97  
DC  HOP2   H N N 98  
DC  "H5'"  H N N 99  
DC  "H5''" H N N 100 
DC  "H4'"  H N N 101 
DC  "H3'"  H N N 102 
DC  "HO3'" H N N 103 
DC  "H2'"  H N N 104 
DC  "H2''" H N N 105 
DC  "H1'"  H N N 106 
DC  H41    H N N 107 
DC  H42    H N N 108 
DC  H5     H N N 109 
DC  H6     H N N 110 
DG  OP3    O N N 111 
DG  P      P N N 112 
DG  OP1    O N N 113 
DG  OP2    O N N 114 
DG  "O5'"  O N N 115 
DG  "C5'"  C N N 116 
DG  "C4'"  C N R 117 
DG  "O4'"  O N N 118 
DG  "C3'"  C N S 119 
DG  "O3'"  O N N 120 
DG  "C2'"  C N N 121 
DG  "C1'"  C N R 122 
DG  N9     N Y N 123 
DG  C8     C Y N 124 
DG  N7     N Y N 125 
DG  C5     C Y N 126 
DG  C6     C N N 127 
DG  O6     O N N 128 
DG  N1     N N N 129 
DG  C2     C N N 130 
DG  N2     N N N 131 
DG  N3     N N N 132 
DG  C4     C Y N 133 
DG  HOP3   H N N 134 
DG  HOP2   H N N 135 
DG  "H5'"  H N N 136 
DG  "H5''" H N N 137 
DG  "H4'"  H N N 138 
DG  "H3'"  H N N 139 
DG  "HO3'" H N N 140 
DG  "H2'"  H N N 141 
DG  "H2''" H N N 142 
DG  "H1'"  H N N 143 
DG  H8     H N N 144 
DG  H1     H N N 145 
DG  H21    H N N 146 
DG  H22    H N N 147 
DT  OP3    O N N 148 
DT  P      P N N 149 
DT  OP1    O N N 150 
DT  OP2    O N N 151 
DT  "O5'"  O N N 152 
DT  "C5'"  C N N 153 
DT  "C4'"  C N R 154 
DT  "O4'"  O N N 155 
DT  "C3'"  C N S 156 
DT  "O3'"  O N N 157 
DT  "C2'"  C N N 158 
DT  "C1'"  C N R 159 
DT  N1     N N N 160 
DT  C2     C N N 161 
DT  O2     O N N 162 
DT  N3     N N N 163 
DT  C4     C N N 164 
DT  O4     O N N 165 
DT  C5     C N N 166 
DT  C7     C N N 167 
DT  C6     C N N 168 
DT  HOP3   H N N 169 
DT  HOP2   H N N 170 
DT  "H5'"  H N N 171 
DT  "H5''" H N N 172 
DT  "H4'"  H N N 173 
DT  "H3'"  H N N 174 
DT  "HO3'" H N N 175 
DT  "H2'"  H N N 176 
DT  "H2''" H N N 177 
DT  "H1'"  H N N 178 
DT  H3     H N N 179 
DT  H71    H N N 180 
DT  H72    H N N 181 
DT  H73    H N N 182 
DT  H6     H N N 183 
FA2 P      P N N 184 
FA2 OP1    O N N 185 
FA2 OP2    O N N 186 
FA2 "O3'"  O N N 187 
FA2 N9     N Y N 188 
FA2 C4     C Y N 189 
FA2 N3     N Y N 190 
FA2 C2     C Y N 191 
FA2 N1     N Y N 192 
FA2 C6     C Y N 193 
FA2 N6     N N N 194 
FA2 C5     C Y N 195 
FA2 N7     N Y N 196 
FA2 C8     C Y N 197 
FA2 "C2'"  C N R 198 
FA2 "C4'"  C N N 199 
FA2 "O4'"  O N N 200 
FA2 "C1'"  C N R 201 
FA2 "C3'"  C N S 202 
FA2 "O2'"  O N N 203 
FA2 OP3    O N N 204 
FA2 HOP2   H N N 205 
FA2 H2     H N N 206 
FA2 H6A    H N N 207 
FA2 H6B    H N N 208 
FA2 H8     H N N 209 
FA2 "H2'"  H N N 210 
FA2 "H4'1" H N N 211 
FA2 "H4'2" H N N 212 
FA2 "H1'"  H N N 213 
FA2 "H3'"  H N N 214 
FA2 "HO2'" H N N 215 
FA2 HOP3   H N N 216 
HOH O      O N N 217 
HOH H1     H N N 218 
HOH H2     H N N 219 
SPM N1     N N N 220 
SPM C2     C N N 221 
SPM C3     C N N 222 
SPM C4     C N N 223 
SPM N5     N N N 224 
SPM C6     C N N 225 
SPM C7     C N N 226 
SPM C8     C N N 227 
SPM C9     C N N 228 
SPM N10    N N N 229 
SPM C11    C N N 230 
SPM C12    C N N 231 
SPM C13    C N N 232 
SPM N14    N N N 233 
SPM HN11   H N N 234 
SPM HN12   H N N 235 
SPM H21    H N N 236 
SPM H22    H N N 237 
SPM H31    H N N 238 
SPM H32    H N N 239 
SPM H41    H N N 240 
SPM H42    H N N 241 
SPM HN5    H N N 242 
SPM H61    H N N 243 
SPM H62    H N N 244 
SPM H71    H N N 245 
SPM H72    H N N 246 
SPM H81    H N N 247 
SPM H82    H N N 248 
SPM H91    H N N 249 
SPM H92    H N N 250 
SPM HN0    H N N 251 
SPM H111   H N N 252 
SPM H112   H N N 253 
SPM H121   H N N 254 
SPM H122   H N N 255 
SPM H131   H N N 256 
SPM H132   H N N 257 
SPM HN41   H N N 258 
SPM HN42   H N N 259 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2MU N1    C2     sing N N 1   
2MU N1    C6     sing N N 2   
2MU N1    "C1'"  sing N N 3   
2MU C2    N3     sing N N 4   
2MU C2    O2     doub N N 5   
2MU N3    C4     sing N N 6   
2MU N3    HN3    sing N N 7   
2MU C4    C5     sing N N 8   
2MU C4    O4     doub N N 9   
2MU C5    C5M    sing N N 10  
2MU C5    C6     doub N N 11  
2MU C5M   HM51   sing N N 12  
2MU C5M   HM52   sing N N 13  
2MU C5M   HM53   sing N N 14  
2MU C6    H6     sing N N 15  
2MU "C1'" "C2'"  sing N N 16  
2MU "C1'" "O4'"  sing N N 17  
2MU "C1'" "H1'"  sing N N 18  
2MU "C2'" "O2'"  sing N N 19  
2MU "C2'" "C3'"  sing N N 20  
2MU "C2'" "H2'"  sing N N 21  
2MU "O2'" "C6'"  sing N N 22  
2MU "C3'" "C4'"  sing N N 23  
2MU "C3'" "O3'"  sing N N 24  
2MU "C3'" "H3'"  sing N N 25  
2MU "C4'" "O4'"  sing N N 26  
2MU "C4'" "C5'"  sing N N 27  
2MU "C4'" "H4'"  sing N N 28  
2MU "O3'" "HO3'" sing N N 29  
2MU "C5'" "O5'"  sing N N 30  
2MU "C5'" "H5'"  sing N N 31  
2MU "C5'" "H5''" sing N N 32  
2MU "O5'" P      sing N N 33  
2MU "C6'" "H6'1" sing N N 34  
2MU "C6'" "H6'2" sing N N 35  
2MU "C6'" "H6'3" sing N N 36  
2MU P     OP1    doub N N 37  
2MU P     OP2    sing N N 38  
2MU P     OP3    sing N N 39  
2MU OP2   HOP2   sing N N 40  
2MU OP3   HOP3   sing N N 41  
DA  OP3   P      sing N N 42  
DA  OP3   HOP3   sing N N 43  
DA  P     OP1    doub N N 44  
DA  P     OP2    sing N N 45  
DA  P     "O5'"  sing N N 46  
DA  OP2   HOP2   sing N N 47  
DA  "O5'" "C5'"  sing N N 48  
DA  "C5'" "C4'"  sing N N 49  
DA  "C5'" "H5'"  sing N N 50  
DA  "C5'" "H5''" sing N N 51  
DA  "C4'" "O4'"  sing N N 52  
DA  "C4'" "C3'"  sing N N 53  
DA  "C4'" "H4'"  sing N N 54  
DA  "O4'" "C1'"  sing N N 55  
DA  "C3'" "O3'"  sing N N 56  
DA  "C3'" "C2'"  sing N N 57  
DA  "C3'" "H3'"  sing N N 58  
DA  "O3'" "HO3'" sing N N 59  
DA  "C2'" "C1'"  sing N N 60  
DA  "C2'" "H2'"  sing N N 61  
DA  "C2'" "H2''" sing N N 62  
DA  "C1'" N9     sing N N 63  
DA  "C1'" "H1'"  sing N N 64  
DA  N9    C8     sing Y N 65  
DA  N9    C4     sing Y N 66  
DA  C8    N7     doub Y N 67  
DA  C8    H8     sing N N 68  
DA  N7    C5     sing Y N 69  
DA  C5    C6     sing Y N 70  
DA  C5    C4     doub Y N 71  
DA  C6    N6     sing N N 72  
DA  C6    N1     doub Y N 73  
DA  N6    H61    sing N N 74  
DA  N6    H62    sing N N 75  
DA  N1    C2     sing Y N 76  
DA  C2    N3     doub Y N 77  
DA  C2    H2     sing N N 78  
DA  N3    C4     sing Y N 79  
DC  OP3   P      sing N N 80  
DC  OP3   HOP3   sing N N 81  
DC  P     OP1    doub N N 82  
DC  P     OP2    sing N N 83  
DC  P     "O5'"  sing N N 84  
DC  OP2   HOP2   sing N N 85  
DC  "O5'" "C5'"  sing N N 86  
DC  "C5'" "C4'"  sing N N 87  
DC  "C5'" "H5'"  sing N N 88  
DC  "C5'" "H5''" sing N N 89  
DC  "C4'" "O4'"  sing N N 90  
DC  "C4'" "C3'"  sing N N 91  
DC  "C4'" "H4'"  sing N N 92  
DC  "O4'" "C1'"  sing N N 93  
DC  "C3'" "O3'"  sing N N 94  
DC  "C3'" "C2'"  sing N N 95  
DC  "C3'" "H3'"  sing N N 96  
DC  "O3'" "HO3'" sing N N 97  
DC  "C2'" "C1'"  sing N N 98  
DC  "C2'" "H2'"  sing N N 99  
DC  "C2'" "H2''" sing N N 100 
DC  "C1'" N1     sing N N 101 
DC  "C1'" "H1'"  sing N N 102 
DC  N1    C2     sing N N 103 
DC  N1    C6     sing N N 104 
DC  C2    O2     doub N N 105 
DC  C2    N3     sing N N 106 
DC  N3    C4     doub N N 107 
DC  C4    N4     sing N N 108 
DC  C4    C5     sing N N 109 
DC  N4    H41    sing N N 110 
DC  N4    H42    sing N N 111 
DC  C5    C6     doub N N 112 
DC  C5    H5     sing N N 113 
DC  C6    H6     sing N N 114 
DG  OP3   P      sing N N 115 
DG  OP3   HOP3   sing N N 116 
DG  P     OP1    doub N N 117 
DG  P     OP2    sing N N 118 
DG  P     "O5'"  sing N N 119 
DG  OP2   HOP2   sing N N 120 
DG  "O5'" "C5'"  sing N N 121 
DG  "C5'" "C4'"  sing N N 122 
DG  "C5'" "H5'"  sing N N 123 
DG  "C5'" "H5''" sing N N 124 
DG  "C4'" "O4'"  sing N N 125 
DG  "C4'" "C3'"  sing N N 126 
DG  "C4'" "H4'"  sing N N 127 
DG  "O4'" "C1'"  sing N N 128 
DG  "C3'" "O3'"  sing N N 129 
DG  "C3'" "C2'"  sing N N 130 
DG  "C3'" "H3'"  sing N N 131 
DG  "O3'" "HO3'" sing N N 132 
DG  "C2'" "C1'"  sing N N 133 
DG  "C2'" "H2'"  sing N N 134 
DG  "C2'" "H2''" sing N N 135 
DG  "C1'" N9     sing N N 136 
DG  "C1'" "H1'"  sing N N 137 
DG  N9    C8     sing Y N 138 
DG  N9    C4     sing Y N 139 
DG  C8    N7     doub Y N 140 
DG  C8    H8     sing N N 141 
DG  N7    C5     sing Y N 142 
DG  C5    C6     sing N N 143 
DG  C5    C4     doub Y N 144 
DG  C6    O6     doub N N 145 
DG  C6    N1     sing N N 146 
DG  N1    C2     sing N N 147 
DG  N1    H1     sing N N 148 
DG  C2    N2     sing N N 149 
DG  C2    N3     doub N N 150 
DG  N2    H21    sing N N 151 
DG  N2    H22    sing N N 152 
DG  N3    C4     sing N N 153 
DT  OP3   P      sing N N 154 
DT  OP3   HOP3   sing N N 155 
DT  P     OP1    doub N N 156 
DT  P     OP2    sing N N 157 
DT  P     "O5'"  sing N N 158 
DT  OP2   HOP2   sing N N 159 
DT  "O5'" "C5'"  sing N N 160 
DT  "C5'" "C4'"  sing N N 161 
DT  "C5'" "H5'"  sing N N 162 
DT  "C5'" "H5''" sing N N 163 
DT  "C4'" "O4'"  sing N N 164 
DT  "C4'" "C3'"  sing N N 165 
DT  "C4'" "H4'"  sing N N 166 
DT  "O4'" "C1'"  sing N N 167 
DT  "C3'" "O3'"  sing N N 168 
DT  "C3'" "C2'"  sing N N 169 
DT  "C3'" "H3'"  sing N N 170 
DT  "O3'" "HO3'" sing N N 171 
DT  "C2'" "C1'"  sing N N 172 
DT  "C2'" "H2'"  sing N N 173 
DT  "C2'" "H2''" sing N N 174 
DT  "C1'" N1     sing N N 175 
DT  "C1'" "H1'"  sing N N 176 
DT  N1    C2     sing N N 177 
DT  N1    C6     sing N N 178 
DT  C2    O2     doub N N 179 
DT  C2    N3     sing N N 180 
DT  N3    C4     sing N N 181 
DT  N3    H3     sing N N 182 
DT  C4    O4     doub N N 183 
DT  C4    C5     sing N N 184 
DT  C5    C7     sing N N 185 
DT  C5    C6     doub N N 186 
DT  C7    H71    sing N N 187 
DT  C7    H72    sing N N 188 
DT  C7    H73    sing N N 189 
DT  C6    H6     sing N N 190 
FA2 P     OP1    doub N N 191 
FA2 P     OP2    sing N N 192 
FA2 P     "O3'"  sing N N 193 
FA2 P     OP3    sing N N 194 
FA2 OP2   HOP2   sing N N 195 
FA2 "O3'" "C3'"  sing N N 196 
FA2 N9    C4     sing Y N 197 
FA2 N9    C8     sing Y N 198 
FA2 N9    "C1'"  sing N N 199 
FA2 C4    N3     sing Y N 200 
FA2 C4    C5     doub Y N 201 
FA2 N3    C2     doub Y N 202 
FA2 C2    N1     sing Y N 203 
FA2 C2    H2     sing N N 204 
FA2 N1    C6     doub Y N 205 
FA2 C6    N6     sing N N 206 
FA2 C6    C5     sing Y N 207 
FA2 N6    H6A    sing N N 208 
FA2 N6    H6B    sing N N 209 
FA2 C5    N7     sing Y N 210 
FA2 N7    C8     doub Y N 211 
FA2 C8    H8     sing N N 212 
FA2 "C2'" "C1'"  sing N N 213 
FA2 "C2'" "C3'"  sing N N 214 
FA2 "C2'" "O2'"  sing N N 215 
FA2 "C2'" "H2'"  sing N N 216 
FA2 "C4'" "O4'"  sing N N 217 
FA2 "C4'" "C3'"  sing N N 218 
FA2 "C4'" "H4'1" sing N N 219 
FA2 "C4'" "H4'2" sing N N 220 
FA2 "O4'" "C1'"  sing N N 221 
FA2 "C1'" "H1'"  sing N N 222 
FA2 "C3'" "H3'"  sing N N 223 
FA2 "O2'" "HO2'" sing N N 224 
FA2 OP3   HOP3   sing N N 225 
HOH O     H1     sing N N 226 
HOH O     H2     sing N N 227 
SPM N1    C2     sing N N 228 
SPM N1    HN11   sing N N 229 
SPM N1    HN12   sing N N 230 
SPM C2    C3     sing N N 231 
SPM C2    H21    sing N N 232 
SPM C2    H22    sing N N 233 
SPM C3    C4     sing N N 234 
SPM C3    H31    sing N N 235 
SPM C3    H32    sing N N 236 
SPM C4    N5     sing N N 237 
SPM C4    H41    sing N N 238 
SPM C4    H42    sing N N 239 
SPM N5    C6     sing N N 240 
SPM N5    HN5    sing N N 241 
SPM C6    C7     sing N N 242 
SPM C6    H61    sing N N 243 
SPM C6    H62    sing N N 244 
SPM C7    C8     sing N N 245 
SPM C7    H71    sing N N 246 
SPM C7    H72    sing N N 247 
SPM C8    C9     sing N N 248 
SPM C8    H81    sing N N 249 
SPM C8    H82    sing N N 250 
SPM C9    N10    sing N N 251 
SPM C9    H91    sing N N 252 
SPM C9    H92    sing N N 253 
SPM N10   C11    sing N N 254 
SPM N10   HN0    sing N N 255 
SPM C11   C12    sing N N 256 
SPM C11   H111   sing N N 257 
SPM C11   H112   sing N N 258 
SPM C12   C13    sing N N 259 
SPM C12   H121   sing N N 260 
SPM C12   H122   sing N N 261 
SPM C13   N14    sing N N 262 
SPM C13   H131   sing N N 263 
SPM C13   H132   sing N N 264 
SPM N14   HN41   sing N N 265 
SPM N14   HN42   sing N N 266 
# 
_ndb_struct_conf_na.entry_id   1PWF 
_ndb_struct_conf_na.feature    'a-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DG  1  1_555 B DC  10 1_555 -0.334 -0.145 0.060  0.367   -5.653  -0.613 1  A_DG1:DC120_B  A 1  ? B 120 ? 19 1 
1 A DC  2  1_555 B DG  9  1_555 0.165  -0.152 0.138  3.209   -11.608 -1.077 2  A_DC2:DG119_B  A 2  ? B 119 ? 19 1 
1 A DG  3  1_555 B DC  8  1_555 -0.353 -0.162 0.153  -9.028  -18.885 -0.795 3  A_DG3:DC118_B  A 3  ? B 118 ? 19 1 
1 A DT  4  1_555 B FA2 7  1_555 -0.209 -0.015 0.014  -12.446 -10.658 -5.367 4  A_DT4:FA2117_B A 4  ? B 117 ? 20 1 
1 A DA  5  1_555 B 2MU 6  1_555 0.104  -0.136 0.111  -1.922  -15.726 -1.630 5  A_DA5:2MU116_B A 5  ? B 116 ? 20 1 
1 A 2MU 6  1_555 B DA  5  1_555 0.075  0.012  0.255  5.564   -18.058 12.843 6  A_2MU6:DA115_B A 6  ? B 115 ? 20 1 
1 A FA2 7  1_555 B DT  4  1_555 0.031  -0.074 -0.025 13.848  -3.894  -0.023 7  A_FA27:DT114_B A 7  ? B 114 ? 20 1 
1 A DC  8  1_555 B DG  3  1_555 0.199  -0.139 -0.115 10.054  -11.833 1.142  8  A_DC8:DG113_B  A 8  ? B 113 ? 19 1 
1 A DG  9  1_555 B DC  2  1_555 -0.161 -0.168 -0.053 -7.748  -10.624 -0.338 9  A_DG9:DC112_B  A 9  ? B 112 ? 19 1 
1 A DC  10 1_555 B DG  1  1_555 0.169  -0.120 0.202  -4.868  4.958   -0.421 10 A_DC10:DG111_B A 10 ? B 111 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DG  1 1_555 B DC  10 1_555 A DC  2  1_555 B DG  9 1_555 0.239  -1.441 3.213 0.822  -0.134 39.836 -2.099 -0.257 3.222 -0.197 
-1.206 39.844 1 AA_DG1DC2:DG119DC120_BB   A 1 ? B 120 ? A 2  ? B 119 ? 
1 A DC  2 1_555 B DG  9  1_555 A DG  3  1_555 B DC  8 1_555 0.081  -2.158 3.355 1.217  10.603 25.197 -6.932 0.100  2.278 23.032 
-2.644 27.330 2 AA_DC2DG3:DC118DG119_BB   A 2 ? B 119 ? A 3  ? B 118 ? 
1 A DG  3 1_555 B DC  8  1_555 A DT  4  1_555 B FA2 7 1_555 -1.055 -1.295 3.210 1.699  1.725  40.379 -2.060 1.710  3.109 2.496  
-2.459 40.448 3 AA_DG3DT4:FA2117DC118_BB  A 3 ? B 118 ? A 4  ? B 117 ? 
1 A DT  4 1_555 B FA2 7  1_555 A DA  5  1_555 B 2MU 6 1_555 0.736  -1.294 3.098 -0.507 21.771 20.562 -6.064 -1.511 1.201 47.131 
1.097  29.865 4 AA_DT4DA5:2MU116FA2117_BB A 4 ? B 117 ? A 5  ? B 116 ? 
1 A DA  5 1_555 B 2MU 6  1_555 A 2MU 6  1_555 B DA  5 1_555 1.092  -1.269 3.051 0.418  5.339  31.977 -3.123 -1.891 2.821 9.607  
-0.752 32.411 5 AA_DA52MU6:DA1152MU116_BB A 5 ? B 116 ? A 6  ? B 115 ? 
1 A 2MU 6 1_555 B DA  5  1_555 A FA2 7  1_555 B DT  4 1_555 -0.564 -1.199 2.921 0.442  17.146 24.504 -5.126 1.168  1.721 35.387 
-0.913 29.834 6 AA_2MU6FA27:DT114DA115_BB A 6 ? B 115 ? A 7  ? B 114 ? 
1 A FA2 7 1_555 B DT  4  1_555 A DC  8  1_555 B DG  3 1_555 -0.190 -1.858 3.396 -4.227 2.534  33.070 -3.659 -0.382 3.247 4.421  
7.374  33.425 7 AA_FA27DC8:DG113DT114_BB  A 7 ? B 114 ? A 8  ? B 113 ? 
1 A DC  8 1_555 B DG  3  1_555 A DG  9  1_555 B DC  2 1_555 -0.612 -2.065 3.602 -1.403 11.771 29.902 -5.825 0.856  2.647 21.767 
2.594  32.116 8 AA_DC8DG9:DC112DG113_BB   A 8 ? B 113 ? A 9  ? B 112 ? 
1 A DG  9 1_555 B DC  2  1_555 A DC  10 1_555 B DG  1 1_555 0.175  -1.756 3.323 0.057  1.005  35.126 -3.059 -0.281 3.273 1.666  
-0.094 35.140 9 AA_DG9DC10:DG111DC112_BB  A 9 ? B 112 ? A 10 ? B 111 ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 SPERMINE SPM 
3 water    HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   1DPL 
_pdbx_initial_refinement_model.details          'PDB ENTRY 1DPL' 
#