data_1PWF # _entry.id 1PWF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1PWF pdb_00001pwf 10.2210/pdb1pwf/pdb NDB AD0030 ? ? RCSB RCSB019634 ? ? WWPDB D_1000019634 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1N1O _pdbx_database_related.details ;Crystal Structure of a B-Form DNA Duplex Containing (L)-alpha-Threofuranosyl (3'-->2') Nucleosides: A Four-Carbon Sugar Is Easily Accommodated into the Backbone of DNA ; _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1PWF _pdbx_database_status.recvd_initial_deposition_date 2003-07-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pallan, P.S.' 1 'Wilds, C.J.' 2 'Wawrzak, Z.' 3 'Krishnamurthy, R.' 4 'Eschenmoser, A.' 5 'Egli, M.' 6 # _citation.id primary _citation.title 'Why does TNA cross-pair more strongly with RNA than with DNA? an answer from X-ray analysis.' _citation.journal_abbrev ANGEW.CHEM.INT.ED.ENGL. _citation.journal_volume 42 _citation.page_first 5893 _citation.page_last 5895 _citation.year 2003 _citation.journal_id_ASTM ACIEAY _citation.country GE _citation.journal_id_ISSN 0570-0833 _citation.journal_id_CSD 0179 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14673929 _citation.pdbx_database_id_DOI 10.1002/anie.200352553 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pallan, P.S.' 1 ? primary 'Wilds, C.J.' 2 ? primary 'Wawrzak, Z.' 3 ? primary 'Krishnamurthy, R.' 4 ? primary 'Eschenmoser, A.' 5 ? primary 'Egli, M.' 6 ? # _cell.entry_id 1PWF _cell.length_a 24.429 _cell.length_b 44.522 _cell.length_c 47.332 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PWF _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*GP*TP*AP*(2MU)P*(FA2)P*CP*GP*C)-3'" 3061.004 2 ? ? ? ;A-DNA decamer duplex with TNA-adenine and 2'-methoxy-thymine modifications ; 2 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 3 water nat water 18.015 109 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(DT)(DA)(2MU)(FA2)(DC)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGTAUACGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 2MU n 1 7 FA2 n 1 8 DC n 1 9 DG n 1 10 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'chemically synthesized oligonucleotide' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1PWF _struct_ref.pdbx_db_accession 1PWF _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1PWF A 1 ? 10 ? 1PWF 1 ? 10 ? 1 10 2 1 1PWF B 1 ? 10 ? 1PWF 111 ? 120 ? 111 120 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2MU 'RNA linking' n "2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE" ? 'C11 H17 N2 O9 P' 352.234 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 FA2 'RNA linking' n '5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXYTETRAHYDROFURAN-3-YL DIHYDROGEN PHOSPHATE' ? 'C9 H12 N5 O6 P' 317.195 HOH non-polymer . WATER ? 'H2 O' 18.015 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # _exptl.entry_id 1PWF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_percent_sol 39.35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;Sodium Cacodylate, Sodium Chloride, Barium Chloride, Spermine tetrahydrochloride, 2-methyl-2,4-pentanediol, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291.0K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'Sodium Cacodylate' ? ? ? 1 2 1 'Sodium Chloride' ? ? ? 1 3 1 'Barium Chloride' ? ? ? 1 4 1 'Spermine tetrahydrochloride' ? ? ? 1 5 1 2-methyl-2,4-pentanediol ? ? ? 1 6 1 H2O ? ? ? 1 7 2 'Sodium Cacodylate' ? ? ? 1 8 2 'Sodium Chloride' ? ? ? 1 9 2 'Barium Chloride' ? ? ? 1 10 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-07-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 1PWF _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.16 _reflns.d_resolution_low 30.0 _reflns.number_all ? _reflns.number_obs 18354 _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.16 _reflns_shell.d_res_low 1.20 _reflns_shell.percent_possible_all 94.5 _reflns_shell.Rmerge_I_obs 0.297 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1704 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1PWF _refine.ls_d_res_high 1.16 _refine.ls_d_res_low 20.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I 0.0 _refine.ls_number_reflns_all 18289 _refine.ls_number_reflns_obs 17371 _refine.ls_number_reflns_R_free 918 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.133 _refine.ls_R_factor_R_work 0.133 _refine.ls_R_factor_R_free 0.188 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ENTRY 1DPL' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ;L. Clowney et al., Geometric Parameters in Nucleic Acids: Nitrogenous Bases, J. Am. Chem. Soc. (1996) 118, 509-518; A. Gelbin et al., Geometric Parameters in Nucleic Acids: Sugar and Phosphate Constituents, J. Am. Chem. Soc. (1996) 118, 519-529; G. Parkinson et al., New Parameters for the Refinement of Nucleic Acid-Containing Structures, Acta Cryst. (1996) D52, 57-64. ; _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 622 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 109 _refine_hist.number_atoms_total 745 _refine_hist.d_res_high 1.16 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.017 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.026 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.034 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.086 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.040 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1PWF _struct.title 'One Sugar Pucker Fits All: Pairing Versatility Despite Conformational Uniformity in TNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1PWF _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, Hydrogen Bonding, Nucleic Acid Etiology, Tetrose, Four Carbon Sugar, Nucleic Acid Analogue, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 5 "O3'" ? ? ? 1_555 A 2MU 6 P ? ? A DA 5 A 2MU 6 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale2 covale both ? A 2MU 6 "O3'" ? ? ? 1_555 A FA2 7 P ? ? A 2MU 6 A FA2 7 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale3 covale one ? A FA2 7 "O2'" ? ? ? 1_555 A DC 8 P ? ? A FA2 7 A DC 8 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale4 covale both ? B DA 5 "O3'" ? ? ? 1_555 B 2MU 6 P ? ? B DA 115 B 2MU 116 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale5 covale both ? B 2MU 6 "O3'" ? ? ? 1_555 B FA2 7 P ? ? B 2MU 116 B FA2 117 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale6 covale one ? B FA2 7 "O2'" ? ? ? 1_555 B DC 8 P ? ? B FA2 117 B DC 118 1_555 ? ? ? ? ? ? ? 1.640 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B FA2 7 N1 ? ? A DT 4 B FA2 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B FA2 7 N6 ? ? A DT 4 B FA2 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B 2MU 6 N3 ? ? A DA 5 B 2MU 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B 2MU 6 O4 ? ? A DA 5 B 2MU 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A 2MU 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? A 2MU 6 B DA 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A 2MU 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? A 2MU 6 B DA 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A FA2 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A FA2 7 B DT 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A FA2 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A FA2 7 B DT 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id SPM _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 11 _struct_site.details 'BINDING SITE FOR RESIDUE SPM B 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 DG A 9 ? DG A 9 . ? 4_466 ? 2 AC1 11 HOH D . ? HOH A 504 . ? 4_466 ? 3 AC1 11 HOH D . ? HOH A 520 . ? 4_466 ? 4 AC1 11 HOH D . ? HOH A 521 . ? 2_565 ? 5 AC1 11 HOH D . ? HOH A 522 . ? 2_565 ? 6 AC1 11 DG B 3 ? DG B 113 . ? 1_555 ? 7 AC1 11 DT B 4 ? DT B 114 . ? 1_555 ? 8 AC1 11 DG B 9 ? DG B 119 . ? 2_465 ? 9 AC1 11 HOH E . ? HOH B 534 . ? 1_555 ? 10 AC1 11 HOH E . ? HOH B 573 . ? 1_555 ? 11 AC1 11 HOH E . ? HOH B 577 . ? 1_555 ? # _database_PDB_matrix.entry_id 1PWF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1PWF _atom_sites.fract_transf_matrix[1][1] 0.040935 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022461 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021127 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 2MU 6 6 6 2MU 2MU A . n A 1 7 FA2 7 7 7 FA2 FA2 A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DC 10 10 10 DC C A . n B 1 1 DG 1 111 111 DG G B . n B 1 2 DC 2 112 112 DC C B . n B 1 3 DG 3 113 113 DG G B . n B 1 4 DT 4 114 114 DT T B . n B 1 5 DA 5 115 115 DA A B . n B 1 6 2MU 6 116 116 2MU 2MU B . n B 1 7 FA2 7 117 117 FA2 FA2 B . n B 1 8 DC 8 118 118 DC C B . n B 1 9 DG 9 119 119 DG G B . n B 1 10 DC 10 120 120 DC C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SPM 1 201 201 SPM SPM B . D 3 HOH 1 501 501 HOH HOH A . D 3 HOH 2 504 504 HOH HOH A . D 3 HOH 3 506 506 HOH HOH A . D 3 HOH 4 509 509 HOH HOH A . D 3 HOH 5 512 512 HOH HOH A . D 3 HOH 6 513 513 HOH HOH A . D 3 HOH 7 516 516 HOH HOH A . D 3 HOH 8 517 517 HOH HOH A . D 3 HOH 9 520 520 HOH HOH A . D 3 HOH 10 521 521 HOH HOH A . D 3 HOH 11 522 522 HOH HOH A . D 3 HOH 12 526 526 HOH HOH A . D 3 HOH 13 529 529 HOH HOH A . D 3 HOH 14 531 531 HOH HOH A . D 3 HOH 15 532 532 HOH HOH A . D 3 HOH 16 535 535 HOH HOH A . D 3 HOH 17 536 536 HOH HOH A . D 3 HOH 18 539 539 HOH HOH A . D 3 HOH 19 541 541 HOH HOH A . D 3 HOH 20 542 542 HOH HOH A . D 3 HOH 21 543 543 HOH HOH A . D 3 HOH 22 544 544 HOH HOH A . D 3 HOH 23 547 547 HOH HOH A . D 3 HOH 24 548 548 HOH HOH A . D 3 HOH 25 549 549 HOH HOH A . D 3 HOH 26 552 552 HOH HOH A . D 3 HOH 27 553 553 HOH HOH A . D 3 HOH 28 555 555 HOH HOH A . D 3 HOH 29 556 556 HOH HOH A . D 3 HOH 30 557 557 HOH HOH A . D 3 HOH 31 560 560 HOH HOH A . D 3 HOH 32 561 561 HOH HOH A . D 3 HOH 33 562 562 HOH HOH A . D 3 HOH 34 563 563 HOH HOH A . D 3 HOH 35 565 565 HOH HOH A . D 3 HOH 36 567 567 HOH HOH A . D 3 HOH 37 568 568 HOH HOH A . D 3 HOH 38 570 570 HOH HOH A . D 3 HOH 39 572 572 HOH HOH A . D 3 HOH 40 576 576 HOH HOH A . D 3 HOH 41 579 579 HOH HOH A . D 3 HOH 42 581 581 HOH HOH A . D 3 HOH 43 582 582 HOH HOH A . D 3 HOH 44 584 584 HOH HOH A . D 3 HOH 45 588 588 HOH HOH A . D 3 HOH 46 590 590 HOH HOH A . D 3 HOH 47 592 592 HOH HOH A . D 3 HOH 48 593 593 HOH HOH A . D 3 HOH 49 596 596 HOH HOH A . D 3 HOH 50 597 597 HOH HOH A . D 3 HOH 51 598 598 HOH HOH A . D 3 HOH 52 599 599 HOH HOH A . D 3 HOH 53 600 600 HOH HOH A . D 3 HOH 54 602 602 HOH HOH A . D 3 HOH 55 603 603 HOH HOH A . D 3 HOH 56 604 604 HOH HOH A . D 3 HOH 57 606 606 HOH HOH A . D 3 HOH 58 607 607 HOH HOH A . D 3 HOH 59 608 608 HOH HOH A . D 3 HOH 60 609 609 HOH HOH A . E 3 HOH 1 502 502 HOH HOH B . E 3 HOH 2 503 503 HOH HOH B . E 3 HOH 3 505 505 HOH HOH B . E 3 HOH 4 507 507 HOH HOH B . E 3 HOH 5 508 508 HOH HOH B . E 3 HOH 6 510 510 HOH HOH B . E 3 HOH 7 511 511 HOH HOH B . E 3 HOH 8 514 514 HOH HOH B . E 3 HOH 9 515 515 HOH HOH B . E 3 HOH 10 518 518 HOH HOH B . E 3 HOH 11 519 519 HOH HOH B . E 3 HOH 12 523 523 HOH HOH B . E 3 HOH 13 524 524 HOH HOH B . E 3 HOH 14 525 525 HOH HOH B . E 3 HOH 15 527 527 HOH HOH B . E 3 HOH 16 528 528 HOH HOH B . E 3 HOH 17 530 530 HOH HOH B . E 3 HOH 18 533 533 HOH HOH B . E 3 HOH 19 534 534 HOH HOH B . E 3 HOH 20 537 537 HOH HOH B . E 3 HOH 21 538 538 HOH HOH B . E 3 HOH 22 540 540 HOH HOH B . E 3 HOH 23 545 545 HOH HOH B . E 3 HOH 24 546 546 HOH HOH B . E 3 HOH 25 550 550 HOH HOH B . E 3 HOH 26 551 551 HOH HOH B . E 3 HOH 27 554 554 HOH HOH B . E 3 HOH 28 558 558 HOH HOH B . E 3 HOH 29 559 559 HOH HOH B . E 3 HOH 30 564 564 HOH HOH B . E 3 HOH 31 566 566 HOH HOH B . E 3 HOH 32 569 569 HOH HOH B . E 3 HOH 33 571 571 HOH HOH B . E 3 HOH 34 573 573 HOH HOH B . E 3 HOH 35 574 574 HOH HOH B . E 3 HOH 36 575 575 HOH HOH B . E 3 HOH 37 577 577 HOH HOH B . E 3 HOH 38 578 578 HOH HOH B . E 3 HOH 39 580 580 HOH HOH B . E 3 HOH 40 583 583 HOH HOH B . E 3 HOH 41 585 585 HOH HOH B . E 3 HOH 42 586 586 HOH HOH B . E 3 HOH 43 587 587 HOH HOH B . E 3 HOH 44 589 589 HOH HOH B . E 3 HOH 45 591 591 HOH HOH B . E 3 HOH 46 594 594 HOH HOH B . E 3 HOH 47 595 595 HOH HOH B . E 3 HOH 48 601 601 HOH HOH B . E 3 HOH 49 605 605 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 2MU 6 A 2MU 6 ? U "2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE" 2 A FA2 7 A FA2 7 ? DA ? 3 B 2MU 6 B 2MU 116 ? U "2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE" 4 B FA2 7 B FA2 117 ? DA ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-07-13 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2019-07-24 6 'Structure model' 1 5 2023-08-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' 8 6 'Structure model' Advisory 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Database references' 11 6 'Structure model' 'Derived calculations' 12 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_unobs_or_zero_occ_residues 2 4 'Structure model' pdbx_validate_polymer_linkage 3 4 'Structure model' software 4 5 'Structure model' software 5 5 'Structure model' struct_conn 6 6 'Structure model' chem_comp_atom 7 6 'Structure model' chem_comp_bond 8 6 'Structure model' database_2 9 6 'Structure model' pdbx_initial_refinement_model 10 6 'Structure model' pdbx_unobs_or_zero_occ_residues 11 6 'Structure model' struct_conn 12 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_software.classification' 4 5 'Structure model' '_software.name' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 6 'Structure model' '_database_2.pdbx_DOI' 7 6 'Structure model' '_database_2.pdbx_database_accession' 8 6 'Structure model' '_struct_conn.pdbx_dist_value' 9 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 11 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 22 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 23 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 24 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 25 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 XDS 'data scaling' . ? 4 XDS 'data reduction' . ? 5 CNS phasing . ? 6 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? 1.459 1.516 -0.057 0.008 N 2 1 "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? 1.448 1.516 -0.068 0.008 N 3 1 "C2'" A DC 2 ? ? "C1'" A DC 2 ? ? 1.454 1.518 -0.064 0.010 N 4 1 "C2'" A DG 3 ? ? "C1'" A DG 3 ? ? 1.437 1.518 -0.081 0.010 N 5 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? 1.500 1.420 0.080 0.011 N 6 1 "C2'" A DT 4 ? ? "C1'" A DT 4 ? ? 1.445 1.518 -0.073 0.010 N 7 1 "C3'" B DC 112 ? ? "C2'" B DC 112 ? ? 1.466 1.516 -0.050 0.008 N 8 1 "C3'" B DG 119 ? ? "C2'" B DG 119 ? ? 1.461 1.516 -0.055 0.008 N 9 1 "C2'" B DG 119 ? ? "C1'" B DG 119 ? ? 1.422 1.518 -0.096 0.010 N 10 1 "O4'" B DG 119 ? ? "C1'" B DG 119 ? ? 1.499 1.420 0.079 0.011 N 11 1 "C3'" B DC 120 ? ? "C2'" B DC 120 ? ? 1.439 1.516 -0.077 0.008 N 12 1 "C2'" B DC 120 ? ? "C1'" B DC 120 ? ? 1.437 1.518 -0.081 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C4'" A DG 1 ? ? "C3'" A DG 1 ? ? 101.95 104.50 -2.55 0.40 N 2 1 N3 A DG 1 ? ? C4 A DG 1 ? ? C5 A DG 1 ? ? 125.37 128.60 -3.23 0.50 N 3 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? "C2'" A DG 3 ? ? 110.33 106.80 3.53 0.50 N 4 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 101.17 108.00 -6.83 0.70 N 5 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 103.40 108.00 -4.60 0.70 N 6 1 C5 A DG 9 ? ? C6 A DG 9 ? ? N1 A DG 9 ? ? 114.74 111.50 3.24 0.50 N 7 1 "O4'" B DG 111 ? ? "C1'" B DG 111 ? ? N9 B DG 111 ? ? 103.09 108.00 -4.91 0.70 N 8 1 "O4'" B DT 114 ? ? "C4'" B DT 114 ? ? "C3'" B DT 114 ? ? 100.46 104.50 -4.04 0.40 N 9 1 "O4'" B DA 115 ? ? "C4'" B DA 115 ? ? "C3'" B DA 115 ? ? 101.24 104.50 -3.26 0.40 N 10 1 "O4'" B DG 119 ? ? "C1'" B DG 119 ? ? N9 B DG 119 ? ? 102.26 108.00 -5.74 0.70 N 11 1 C4 B DG 119 ? ? C5 B DG 119 ? ? N7 B DG 119 ? ? 108.38 110.80 -2.42 0.40 N 12 1 N3 B DG 119 ? ? C2 B DG 119 ? ? N2 B DG 119 ? ? 124.25 119.90 4.35 0.70 N 13 1 "O4'" B DC 120 ? ? "C1'" B DC 120 ? ? N1 B DC 120 ? ? 102.60 108.00 -5.40 0.70 N 14 1 C6 B DC 120 ? ? N1 B DC 120 ? ? C2 B DC 120 ? ? 123.02 120.30 2.72 0.40 N 15 1 C4 B DC 120 ? ? C5 B DC 120 ? ? C6 B DC 120 ? ? 121.88 117.40 4.48 0.50 N 16 1 C5 B DC 120 ? ? C6 B DC 120 ? ? N1 B DC 120 ? ? 115.62 121.00 -5.38 0.50 N # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag N _pdbx_unobs_or_zero_occ_residues.occupancy_flag 0 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id HOH _pdbx_unobs_or_zero_occ_residues.auth_seq_id 589 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id E _pdbx_unobs_or_zero_occ_residues.label_comp_id HOH _pdbx_unobs_or_zero_occ_residues.label_seq_id ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2MU N1 N N N 1 2MU C2 C N N 2 2MU N3 N N N 3 2MU C4 C N N 4 2MU C5 C N N 5 2MU C5M C N N 6 2MU C6 C N N 7 2MU O2 O N N 8 2MU O4 O N N 9 2MU "C1'" C N R 10 2MU "C2'" C N R 11 2MU "O2'" O N N 12 2MU "C3'" C N R 13 2MU "C4'" C N R 14 2MU "O3'" O N N 15 2MU "O4'" O N N 16 2MU "C5'" C N N 17 2MU "O5'" O N N 18 2MU "C6'" C N N 19 2MU P P N N 20 2MU OP1 O N N 21 2MU OP2 O N N 22 2MU OP3 O N N 23 2MU HN3 H N N 24 2MU HM51 H N N 25 2MU HM52 H N N 26 2MU HM53 H N N 27 2MU H6 H N N 28 2MU "H1'" H N N 29 2MU "H2'" H N N 30 2MU "H3'" H N N 31 2MU "H4'" H N N 32 2MU "HO3'" H N N 33 2MU "H5'" H N N 34 2MU "H5''" H N N 35 2MU "H6'1" H N N 36 2MU "H6'2" H N N 37 2MU "H6'3" H N N 38 2MU HOP2 H N N 39 2MU HOP3 H N N 40 DA OP3 O N N 41 DA P P N N 42 DA OP1 O N N 43 DA OP2 O N N 44 DA "O5'" O N N 45 DA "C5'" C N N 46 DA "C4'" C N R 47 DA "O4'" O N N 48 DA "C3'" C N S 49 DA "O3'" O N N 50 DA "C2'" C N N 51 DA "C1'" C N R 52 DA N9 N Y N 53 DA C8 C Y N 54 DA N7 N Y N 55 DA C5 C Y N 56 DA C6 C Y N 57 DA N6 N N N 58 DA N1 N Y N 59 DA C2 C Y N 60 DA N3 N Y N 61 DA C4 C Y N 62 DA HOP3 H N N 63 DA HOP2 H N N 64 DA "H5'" H N N 65 DA "H5''" H N N 66 DA "H4'" H N N 67 DA "H3'" H N N 68 DA "HO3'" H N N 69 DA "H2'" H N N 70 DA "H2''" H N N 71 DA "H1'" H N N 72 DA H8 H N N 73 DA H61 H N N 74 DA H62 H N N 75 DA H2 H N N 76 DC OP3 O N N 77 DC P P N N 78 DC OP1 O N N 79 DC OP2 O N N 80 DC "O5'" O N N 81 DC "C5'" C N N 82 DC "C4'" C N R 83 DC "O4'" O N N 84 DC "C3'" C N S 85 DC "O3'" O N N 86 DC "C2'" C N N 87 DC "C1'" C N R 88 DC N1 N N N 89 DC C2 C N N 90 DC O2 O N N 91 DC N3 N N N 92 DC C4 C N N 93 DC N4 N N N 94 DC C5 C N N 95 DC C6 C N N 96 DC HOP3 H N N 97 DC HOP2 H N N 98 DC "H5'" H N N 99 DC "H5''" H N N 100 DC "H4'" H N N 101 DC "H3'" H N N 102 DC "HO3'" H N N 103 DC "H2'" H N N 104 DC "H2''" H N N 105 DC "H1'" H N N 106 DC H41 H N N 107 DC H42 H N N 108 DC H5 H N N 109 DC H6 H N N 110 DG OP3 O N N 111 DG P P N N 112 DG OP1 O N N 113 DG OP2 O N N 114 DG "O5'" O N N 115 DG "C5'" C N N 116 DG "C4'" C N R 117 DG "O4'" O N N 118 DG "C3'" C N S 119 DG "O3'" O N N 120 DG "C2'" C N N 121 DG "C1'" C N R 122 DG N9 N Y N 123 DG C8 C Y N 124 DG N7 N Y N 125 DG C5 C Y N 126 DG C6 C N N 127 DG O6 O N N 128 DG N1 N N N 129 DG C2 C N N 130 DG N2 N N N 131 DG N3 N N N 132 DG C4 C Y N 133 DG HOP3 H N N 134 DG HOP2 H N N 135 DG "H5'" H N N 136 DG "H5''" H N N 137 DG "H4'" H N N 138 DG "H3'" H N N 139 DG "HO3'" H N N 140 DG "H2'" H N N 141 DG "H2''" H N N 142 DG "H1'" H N N 143 DG H8 H N N 144 DG H1 H N N 145 DG H21 H N N 146 DG H22 H N N 147 DT OP3 O N N 148 DT P P N N 149 DT OP1 O N N 150 DT OP2 O N N 151 DT "O5'" O N N 152 DT "C5'" C N N 153 DT "C4'" C N R 154 DT "O4'" O N N 155 DT "C3'" C N S 156 DT "O3'" O N N 157 DT "C2'" C N N 158 DT "C1'" C N R 159 DT N1 N N N 160 DT C2 C N N 161 DT O2 O N N 162 DT N3 N N N 163 DT C4 C N N 164 DT O4 O N N 165 DT C5 C N N 166 DT C7 C N N 167 DT C6 C N N 168 DT HOP3 H N N 169 DT HOP2 H N N 170 DT "H5'" H N N 171 DT "H5''" H N N 172 DT "H4'" H N N 173 DT "H3'" H N N 174 DT "HO3'" H N N 175 DT "H2'" H N N 176 DT "H2''" H N N 177 DT "H1'" H N N 178 DT H3 H N N 179 DT H71 H N N 180 DT H72 H N N 181 DT H73 H N N 182 DT H6 H N N 183 FA2 P P N N 184 FA2 OP1 O N N 185 FA2 OP2 O N N 186 FA2 "O3'" O N N 187 FA2 N9 N Y N 188 FA2 C4 C Y N 189 FA2 N3 N Y N 190 FA2 C2 C Y N 191 FA2 N1 N Y N 192 FA2 C6 C Y N 193 FA2 N6 N N N 194 FA2 C5 C Y N 195 FA2 N7 N Y N 196 FA2 C8 C Y N 197 FA2 "C2'" C N R 198 FA2 "C4'" C N N 199 FA2 "O4'" O N N 200 FA2 "C1'" C N R 201 FA2 "C3'" C N S 202 FA2 "O2'" O N N 203 FA2 OP3 O N N 204 FA2 HOP2 H N N 205 FA2 H2 H N N 206 FA2 H6A H N N 207 FA2 H6B H N N 208 FA2 H8 H N N 209 FA2 "H2'" H N N 210 FA2 "H4'1" H N N 211 FA2 "H4'2" H N N 212 FA2 "H1'" H N N 213 FA2 "H3'" H N N 214 FA2 "HO2'" H N N 215 FA2 HOP3 H N N 216 HOH O O N N 217 HOH H1 H N N 218 HOH H2 H N N 219 SPM N1 N N N 220 SPM C2 C N N 221 SPM C3 C N N 222 SPM C4 C N N 223 SPM N5 N N N 224 SPM C6 C N N 225 SPM C7 C N N 226 SPM C8 C N N 227 SPM C9 C N N 228 SPM N10 N N N 229 SPM C11 C N N 230 SPM C12 C N N 231 SPM C13 C N N 232 SPM N14 N N N 233 SPM HN11 H N N 234 SPM HN12 H N N 235 SPM H21 H N N 236 SPM H22 H N N 237 SPM H31 H N N 238 SPM H32 H N N 239 SPM H41 H N N 240 SPM H42 H N N 241 SPM HN5 H N N 242 SPM H61 H N N 243 SPM H62 H N N 244 SPM H71 H N N 245 SPM H72 H N N 246 SPM H81 H N N 247 SPM H82 H N N 248 SPM H91 H N N 249 SPM H92 H N N 250 SPM HN0 H N N 251 SPM H111 H N N 252 SPM H112 H N N 253 SPM H121 H N N 254 SPM H122 H N N 255 SPM H131 H N N 256 SPM H132 H N N 257 SPM HN41 H N N 258 SPM HN42 H N N 259 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2MU N1 C2 sing N N 1 2MU N1 C6 sing N N 2 2MU N1 "C1'" sing N N 3 2MU C2 N3 sing N N 4 2MU C2 O2 doub N N 5 2MU N3 C4 sing N N 6 2MU N3 HN3 sing N N 7 2MU C4 C5 sing N N 8 2MU C4 O4 doub N N 9 2MU C5 C5M sing N N 10 2MU C5 C6 doub N N 11 2MU C5M HM51 sing N N 12 2MU C5M HM52 sing N N 13 2MU C5M HM53 sing N N 14 2MU C6 H6 sing N N 15 2MU "C1'" "C2'" sing N N 16 2MU "C1'" "O4'" sing N N 17 2MU "C1'" "H1'" sing N N 18 2MU "C2'" "O2'" sing N N 19 2MU "C2'" "C3'" sing N N 20 2MU "C2'" "H2'" sing N N 21 2MU "O2'" "C6'" sing N N 22 2MU "C3'" "C4'" sing N N 23 2MU "C3'" "O3'" sing N N 24 2MU "C3'" "H3'" sing N N 25 2MU "C4'" "O4'" sing N N 26 2MU "C4'" "C5'" sing N N 27 2MU "C4'" "H4'" sing N N 28 2MU "O3'" "HO3'" sing N N 29 2MU "C5'" "O5'" sing N N 30 2MU "C5'" "H5'" sing N N 31 2MU "C5'" "H5''" sing N N 32 2MU "O5'" P sing N N 33 2MU "C6'" "H6'1" sing N N 34 2MU "C6'" "H6'2" sing N N 35 2MU "C6'" "H6'3" sing N N 36 2MU P OP1 doub N N 37 2MU P OP2 sing N N 38 2MU P OP3 sing N N 39 2MU OP2 HOP2 sing N N 40 2MU OP3 HOP3 sing N N 41 DA OP3 P sing N N 42 DA OP3 HOP3 sing N N 43 DA P OP1 doub N N 44 DA P OP2 sing N N 45 DA P "O5'" sing N N 46 DA OP2 HOP2 sing N N 47 DA "O5'" "C5'" sing N N 48 DA "C5'" "C4'" sing N N 49 DA "C5'" "H5'" sing N N 50 DA "C5'" "H5''" sing N N 51 DA "C4'" "O4'" sing N N 52 DA "C4'" "C3'" sing N N 53 DA "C4'" "H4'" sing N N 54 DA "O4'" "C1'" sing N N 55 DA "C3'" "O3'" sing N N 56 DA "C3'" "C2'" sing N N 57 DA "C3'" "H3'" sing N N 58 DA "O3'" "HO3'" sing N N 59 DA "C2'" "C1'" sing N N 60 DA "C2'" "H2'" sing N N 61 DA "C2'" "H2''" sing N N 62 DA "C1'" N9 sing N N 63 DA "C1'" "H1'" sing N N 64 DA N9 C8 sing Y N 65 DA N9 C4 sing Y N 66 DA C8 N7 doub Y N 67 DA C8 H8 sing N N 68 DA N7 C5 sing Y N 69 DA C5 C6 sing Y N 70 DA C5 C4 doub Y N 71 DA C6 N6 sing N N 72 DA C6 N1 doub Y N 73 DA N6 H61 sing N N 74 DA N6 H62 sing N N 75 DA N1 C2 sing Y N 76 DA C2 N3 doub Y N 77 DA C2 H2 sing N N 78 DA N3 C4 sing Y N 79 DC OP3 P sing N N 80 DC OP3 HOP3 sing N N 81 DC P OP1 doub N N 82 DC P OP2 sing N N 83 DC P "O5'" sing N N 84 DC OP2 HOP2 sing N N 85 DC "O5'" "C5'" sing N N 86 DC "C5'" "C4'" sing N N 87 DC "C5'" "H5'" sing N N 88 DC "C5'" "H5''" sing N N 89 DC "C4'" "O4'" sing N N 90 DC "C4'" "C3'" sing N N 91 DC "C4'" "H4'" sing N N 92 DC "O4'" "C1'" sing N N 93 DC "C3'" "O3'" sing N N 94 DC "C3'" "C2'" sing N N 95 DC "C3'" "H3'" sing N N 96 DC "O3'" "HO3'" sing N N 97 DC "C2'" "C1'" sing N N 98 DC "C2'" "H2'" sing N N 99 DC "C2'" "H2''" sing N N 100 DC "C1'" N1 sing N N 101 DC "C1'" "H1'" sing N N 102 DC N1 C2 sing N N 103 DC N1 C6 sing N N 104 DC C2 O2 doub N N 105 DC C2 N3 sing N N 106 DC N3 C4 doub N N 107 DC C4 N4 sing N N 108 DC C4 C5 sing N N 109 DC N4 H41 sing N N 110 DC N4 H42 sing N N 111 DC C5 C6 doub N N 112 DC C5 H5 sing N N 113 DC C6 H6 sing N N 114 DG OP3 P sing N N 115 DG OP3 HOP3 sing N N 116 DG P OP1 doub N N 117 DG P OP2 sing N N 118 DG P "O5'" sing N N 119 DG OP2 HOP2 sing N N 120 DG "O5'" "C5'" sing N N 121 DG "C5'" "C4'" sing N N 122 DG "C5'" "H5'" sing N N 123 DG "C5'" "H5''" sing N N 124 DG "C4'" "O4'" sing N N 125 DG "C4'" "C3'" sing N N 126 DG "C4'" "H4'" sing N N 127 DG "O4'" "C1'" sing N N 128 DG "C3'" "O3'" sing N N 129 DG "C3'" "C2'" sing N N 130 DG "C3'" "H3'" sing N N 131 DG "O3'" "HO3'" sing N N 132 DG "C2'" "C1'" sing N N 133 DG "C2'" "H2'" sing N N 134 DG "C2'" "H2''" sing N N 135 DG "C1'" N9 sing N N 136 DG "C1'" "H1'" sing N N 137 DG N9 C8 sing Y N 138 DG N9 C4 sing Y N 139 DG C8 N7 doub Y N 140 DG C8 H8 sing N N 141 DG N7 C5 sing Y N 142 DG C5 C6 sing N N 143 DG C5 C4 doub Y N 144 DG C6 O6 doub N N 145 DG C6 N1 sing N N 146 DG N1 C2 sing N N 147 DG N1 H1 sing N N 148 DG C2 N2 sing N N 149 DG C2 N3 doub N N 150 DG N2 H21 sing N N 151 DG N2 H22 sing N N 152 DG N3 C4 sing N N 153 DT OP3 P sing N N 154 DT OP3 HOP3 sing N N 155 DT P OP1 doub N N 156 DT P OP2 sing N N 157 DT P "O5'" sing N N 158 DT OP2 HOP2 sing N N 159 DT "O5'" "C5'" sing N N 160 DT "C5'" "C4'" sing N N 161 DT "C5'" "H5'" sing N N 162 DT "C5'" "H5''" sing N N 163 DT "C4'" "O4'" sing N N 164 DT "C4'" "C3'" sing N N 165 DT "C4'" "H4'" sing N N 166 DT "O4'" "C1'" sing N N 167 DT "C3'" "O3'" sing N N 168 DT "C3'" "C2'" sing N N 169 DT "C3'" "H3'" sing N N 170 DT "O3'" "HO3'" sing N N 171 DT "C2'" "C1'" sing N N 172 DT "C2'" "H2'" sing N N 173 DT "C2'" "H2''" sing N N 174 DT "C1'" N1 sing N N 175 DT "C1'" "H1'" sing N N 176 DT N1 C2 sing N N 177 DT N1 C6 sing N N 178 DT C2 O2 doub N N 179 DT C2 N3 sing N N 180 DT N3 C4 sing N N 181 DT N3 H3 sing N N 182 DT C4 O4 doub N N 183 DT C4 C5 sing N N 184 DT C5 C7 sing N N 185 DT C5 C6 doub N N 186 DT C7 H71 sing N N 187 DT C7 H72 sing N N 188 DT C7 H73 sing N N 189 DT C6 H6 sing N N 190 FA2 P OP1 doub N N 191 FA2 P OP2 sing N N 192 FA2 P "O3'" sing N N 193 FA2 P OP3 sing N N 194 FA2 OP2 HOP2 sing N N 195 FA2 "O3'" "C3'" sing N N 196 FA2 N9 C4 sing Y N 197 FA2 N9 C8 sing Y N 198 FA2 N9 "C1'" sing N N 199 FA2 C4 N3 sing Y N 200 FA2 C4 C5 doub Y N 201 FA2 N3 C2 doub Y N 202 FA2 C2 N1 sing Y N 203 FA2 C2 H2 sing N N 204 FA2 N1 C6 doub Y N 205 FA2 C6 N6 sing N N 206 FA2 C6 C5 sing Y N 207 FA2 N6 H6A sing N N 208 FA2 N6 H6B sing N N 209 FA2 C5 N7 sing Y N 210 FA2 N7 C8 doub Y N 211 FA2 C8 H8 sing N N 212 FA2 "C2'" "C1'" sing N N 213 FA2 "C2'" "C3'" sing N N 214 FA2 "C2'" "O2'" sing N N 215 FA2 "C2'" "H2'" sing N N 216 FA2 "C4'" "O4'" sing N N 217 FA2 "C4'" "C3'" sing N N 218 FA2 "C4'" "H4'1" sing N N 219 FA2 "C4'" "H4'2" sing N N 220 FA2 "O4'" "C1'" sing N N 221 FA2 "C1'" "H1'" sing N N 222 FA2 "C3'" "H3'" sing N N 223 FA2 "O2'" "HO2'" sing N N 224 FA2 OP3 HOP3 sing N N 225 HOH O H1 sing N N 226 HOH O H2 sing N N 227 SPM N1 C2 sing N N 228 SPM N1 HN11 sing N N 229 SPM N1 HN12 sing N N 230 SPM C2 C3 sing N N 231 SPM C2 H21 sing N N 232 SPM C2 H22 sing N N 233 SPM C3 C4 sing N N 234 SPM C3 H31 sing N N 235 SPM C3 H32 sing N N 236 SPM C4 N5 sing N N 237 SPM C4 H41 sing N N 238 SPM C4 H42 sing N N 239 SPM N5 C6 sing N N 240 SPM N5 HN5 sing N N 241 SPM C6 C7 sing N N 242 SPM C6 H61 sing N N 243 SPM C6 H62 sing N N 244 SPM C7 C8 sing N N 245 SPM C7 H71 sing N N 246 SPM C7 H72 sing N N 247 SPM C8 C9 sing N N 248 SPM C8 H81 sing N N 249 SPM C8 H82 sing N N 250 SPM C9 N10 sing N N 251 SPM C9 H91 sing N N 252 SPM C9 H92 sing N N 253 SPM N10 C11 sing N N 254 SPM N10 HN0 sing N N 255 SPM C11 C12 sing N N 256 SPM C11 H111 sing N N 257 SPM C11 H112 sing N N 258 SPM C12 C13 sing N N 259 SPM C12 H121 sing N N 260 SPM C12 H122 sing N N 261 SPM C13 N14 sing N N 262 SPM C13 H131 sing N N 263 SPM C13 H132 sing N N 264 SPM N14 HN41 sing N N 265 SPM N14 HN42 sing N N 266 # _ndb_struct_conf_na.entry_id 1PWF _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.334 -0.145 0.060 0.367 -5.653 -0.613 1 A_DG1:DC120_B A 1 ? B 120 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.165 -0.152 0.138 3.209 -11.608 -1.077 2 A_DC2:DG119_B A 2 ? B 119 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.353 -0.162 0.153 -9.028 -18.885 -0.795 3 A_DG3:DC118_B A 3 ? B 118 ? 19 1 1 A DT 4 1_555 B FA2 7 1_555 -0.209 -0.015 0.014 -12.446 -10.658 -5.367 4 A_DT4:FA2117_B A 4 ? B 117 ? 20 1 1 A DA 5 1_555 B 2MU 6 1_555 0.104 -0.136 0.111 -1.922 -15.726 -1.630 5 A_DA5:2MU116_B A 5 ? B 116 ? 20 1 1 A 2MU 6 1_555 B DA 5 1_555 0.075 0.012 0.255 5.564 -18.058 12.843 6 A_2MU6:DA115_B A 6 ? B 115 ? 20 1 1 A FA2 7 1_555 B DT 4 1_555 0.031 -0.074 -0.025 13.848 -3.894 -0.023 7 A_FA27:DT114_B A 7 ? B 114 ? 20 1 1 A DC 8 1_555 B DG 3 1_555 0.199 -0.139 -0.115 10.054 -11.833 1.142 8 A_DC8:DG113_B A 8 ? B 113 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.161 -0.168 -0.053 -7.748 -10.624 -0.338 9 A_DG9:DC112_B A 9 ? B 112 ? 19 1 1 A DC 10 1_555 B DG 1 1_555 0.169 -0.120 0.202 -4.868 4.958 -0.421 10 A_DC10:DG111_B A 10 ? B 111 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DC 2 1_555 B DG 9 1_555 0.239 -1.441 3.213 0.822 -0.134 39.836 -2.099 -0.257 3.222 -0.197 -1.206 39.844 1 AA_DG1DC2:DG119DC120_BB A 1 ? B 120 ? A 2 ? B 119 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 0.081 -2.158 3.355 1.217 10.603 25.197 -6.932 0.100 2.278 23.032 -2.644 27.330 2 AA_DC2DG3:DC118DG119_BB A 2 ? B 119 ? A 3 ? B 118 ? 1 A DG 3 1_555 B DC 8 1_555 A DT 4 1_555 B FA2 7 1_555 -1.055 -1.295 3.210 1.699 1.725 40.379 -2.060 1.710 3.109 2.496 -2.459 40.448 3 AA_DG3DT4:FA2117DC118_BB A 3 ? B 118 ? A 4 ? B 117 ? 1 A DT 4 1_555 B FA2 7 1_555 A DA 5 1_555 B 2MU 6 1_555 0.736 -1.294 3.098 -0.507 21.771 20.562 -6.064 -1.511 1.201 47.131 1.097 29.865 4 AA_DT4DA5:2MU116FA2117_BB A 4 ? B 117 ? A 5 ? B 116 ? 1 A DA 5 1_555 B 2MU 6 1_555 A 2MU 6 1_555 B DA 5 1_555 1.092 -1.269 3.051 0.418 5.339 31.977 -3.123 -1.891 2.821 9.607 -0.752 32.411 5 AA_DA52MU6:DA1152MU116_BB A 5 ? B 116 ? A 6 ? B 115 ? 1 A 2MU 6 1_555 B DA 5 1_555 A FA2 7 1_555 B DT 4 1_555 -0.564 -1.199 2.921 0.442 17.146 24.504 -5.126 1.168 1.721 35.387 -0.913 29.834 6 AA_2MU6FA27:DT114DA115_BB A 6 ? B 115 ? A 7 ? B 114 ? 1 A FA2 7 1_555 B DT 4 1_555 A DC 8 1_555 B DG 3 1_555 -0.190 -1.858 3.396 -4.227 2.534 33.070 -3.659 -0.382 3.247 4.421 7.374 33.425 7 AA_FA27DC8:DG113DT114_BB A 7 ? B 114 ? A 8 ? B 113 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.612 -2.065 3.602 -1.403 11.771 29.902 -5.825 0.856 2.647 21.767 2.594 32.116 8 AA_DC8DG9:DC112DG113_BB A 8 ? B 113 ? A 9 ? B 112 ? 1 A DG 9 1_555 B DC 2 1_555 A DC 10 1_555 B DG 1 1_555 0.175 -1.756 3.323 0.057 1.005 35.126 -3.059 -0.281 3.273 1.666 -0.094 35.140 9 AA_DG9DC10:DG111DC112_BB A 9 ? B 112 ? A 10 ? B 111 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 SPERMINE SPM 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DPL _pdbx_initial_refinement_model.details 'PDB ENTRY 1DPL' #