HEADER IMMUNE SYSTEM 07-JUL-03 1PY2
TITLE STRUCTURE OF A 60 NM SMALL MOLECULE BOUND TO A HOT SPOT ON IL-2
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: INTERLEUKIN-2;
COMPND 3 CHAIN: A, B, C, D;
COMPND 4 SYNONYM: IL-2, T-CELL GROWTH FACTOR, TCGF, ALDESLEUKIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: IL2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS IL-2, INTERLEUKIN 2, SMALL MOLECULE, HOT SPOT, MOLECULAR RECOGNITION,
KEYWDS 2 IMMUNE SYSTEM
EXPDTA X-RAY DIFFRACTION
AUTHOR C.D.THANOS,M.RANDAL,J.A.WELLS
REVDAT 4 30-OCT-24 1PY2 1 REMARK LINK
REVDAT 3 13-JUL-11 1PY2 1 VERSN
REVDAT 2 24-FEB-09 1PY2 1 VERSN
REVDAT 1 13-JAN-04 1PY2 0
JRNL AUTH C.D.THANOS,M.RANDAL,J.A.WELLS
JRNL TITL POTENT SMALL-MOLECULE BINDING TO A DYNAMIC HOT SPOT ON IL-2.
JRNL REF J.AM.CHEM.SOC. V. 125 15280 2003
JRNL REFN ISSN 0002-7863
JRNL PMID 14664558
JRNL DOI 10.1021/JA0382617
REMARK 2
REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.1.19
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4
REMARK 3 NUMBER OF REFLECTIONS : 12442
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.273
REMARK 3 R VALUE (WORKING SET) : 0.271
REMARK 3 FREE R VALUE : 0.320
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900
REMARK 3 FREE R VALUE TEST SET COUNT : 640
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87
REMARK 3 REFLECTION IN BIN (WORKING SET) : 891
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : 0.3400
REMARK 3 BIN FREE R VALUE SET COUNT : 40
REMARK 3 BIN FREE R VALUE : 0.3940
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3832
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 183
REMARK 3 SOLVENT ATOMS : 0
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.46
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 3.84000
REMARK 3 B22 (A**2) : -2.69000
REMARK 3 B33 (A**2) : 0.92000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 3.67000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): NULL
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.508
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.448
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.885
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.894
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.830
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3891 ; 0.013 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5282 ; 1.233 ; 2.034
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 3.556 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 638 ; 0.042 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2816 ; 0.001 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1605 ; 0.141 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 49 ; 0.087 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 80 ; 0.105 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.073 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2328 ; 0.826 ; 2.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3734 ; 1.504 ; 5.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1563 ; 0.685 ; 2.500
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1548 ; 1.164 ; 5.000
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 8
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 6 A 132
REMARK 3 ORIGIN FOR THE GROUP (A): 21.2037 0.4149 3.5042
REMARK 3 T TENSOR
REMARK 3 T11: 0.2354 T22: 0.2709
REMARK 3 T33: 0.3805 T12: 0.0051
REMARK 3 T13: 0.0377 T23: 0.0167
REMARK 3 L TENSOR
REMARK 3 L11: 2.9713 L22: 4.4898
REMARK 3 L33: 4.1551 L12: 0.9354
REMARK 3 L13: -0.1034 L23: 0.6398
REMARK 3 S TENSOR
REMARK 3 S11: 0.0899 S12: -0.0074 S13: 0.0613
REMARK 3 S21: 0.2091 S22: -0.1130 S23: 0.4118
REMARK 3 S31: -0.1100 S32: -0.0554 S33: 0.0230
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 6 B 132
REMARK 3 ORIGIN FOR THE GROUP (A): 40.5061 39.4477 49.2625
REMARK 3 T TENSOR
REMARK 3 T11: 0.3087 T22: 0.3954
REMARK 3 T33: 0.2937 T12: 0.0845
REMARK 3 T13: -0.0877 T23: -0.0192
REMARK 3 L TENSOR
REMARK 3 L11: 1.8352 L22: 5.0357
REMARK 3 L33: 3.1125 L12: 2.0791
REMARK 3 L13: -0.1536 L23: 0.3262
REMARK 3 S TENSOR
REMARK 3 S11: -0.0423 S12: 0.0830 S13: 0.1190
REMARK 3 S21: 0.0301 S22: 0.1143 S23: 0.2429
REMARK 3 S31: 0.0115 S32: -0.2705 S33: -0.0720
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : C 7 C 131
REMARK 3 ORIGIN FOR THE GROUP (A): 18.8066 5.3447 63.6622
REMARK 3 T TENSOR
REMARK 3 T11: 0.2131 T22: 0.4170
REMARK 3 T33: 0.3782 T12: -0.0320
REMARK 3 T13: 0.0056 T23: -0.0608
REMARK 3 L TENSOR
REMARK 3 L11: 2.2761 L22: 4.8402
REMARK 3 L33: 4.8715 L12: 0.4284
REMARK 3 L13: -2.3854 L23: -1.7431
REMARK 3 S TENSOR
REMARK 3 S11: 0.0935 S12: 0.0960 S13: -0.0513
REMARK 3 S21: 0.2182 S22: 0.0202 S23: 0.2541
REMARK 3 S31: -0.0685 S32: -0.3175 S33: -0.1136
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : D 6 D 132
REMARK 3 ORIGIN FOR THE GROUP (A): -18.8603 17.8706 67.4941
REMARK 3 T TENSOR
REMARK 3 T11: 0.3336 T22: 0.4675
REMARK 3 T33: 0.2756 T12: 0.0518
REMARK 3 T13: -0.0191 T23: 0.0021
REMARK 3 L TENSOR
REMARK 3 L11: 0.8009 L22: 6.6907
REMARK 3 L33: 3.0796 L12: -0.2376
REMARK 3 L13: 0.3198 L23: 3.4555
REMARK 3 S TENSOR
REMARK 3 S11: -0.0287 S12: -0.0801 S13: -0.0434
REMARK 3 S21: 0.1366 S22: -0.2427 S23: 0.1782
REMARK 3 S31: -0.1411 S32: -0.2503 S33: 0.2714
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 201 A 201
REMARK 3 ORIGIN FOR THE GROUP (A): 33.9326 11.4403 6.3478
REMARK 3 T TENSOR
REMARK 3 T11: 0.5317 T22: 0.2658
REMARK 3 T33: 0.5510 T12: -0.2762
REMARK 3 T13: -0.0849 T23: -0.0519
REMARK 3 L TENSOR
REMARK 3 L11: 9.6181 L22: -2.3279
REMARK 3 L33: 51.8942 L12: -16.6677
REMARK 3 L13: -1.2124 L23: -16.0448
REMARK 3 S TENSOR
REMARK 3 S11: 0.2803 S12: -0.2824 S13: 0.3231
REMARK 3 S21: 1.7614 S22: 0.2044 S23: -0.0621
REMARK 3 S31: -1.4566 S32: 1.0697 S33: -0.4846
REMARK 3
REMARK 3 TLS GROUP : 6
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 301 B 301
REMARK 3 ORIGIN FOR THE GROUP (A): 53.9221 49.4665 47.8267
REMARK 3 T TENSOR
REMARK 3 T11: 0.4356 T22: 0.4232
REMARK 3 T33: 0.5667 T12: -0.3013
REMARK 3 T13: 0.0009 T23: 0.0202
REMARK 3 L TENSOR
REMARK 3 L11: 48.0875 L22: 6.5902
REMARK 3 L33: 26.6769 L12: -9.7703
REMARK 3 L13: 32.5383 L23: 0.2131
REMARK 3 S TENSOR
REMARK 3 S11: 0.7374 S12: -0.3280 S13: -0.0029
REMARK 3 S21: 0.4758 S22: 0.8077 S23: -1.9792
REMARK 3 S31: -0.7779 S32: 0.3444 S33: -1.5451
REMARK 3
REMARK 3 TLS GROUP : 7
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : C 401 C 401
REMARK 3 ORIGIN FOR THE GROUP (A): 17.2698 -11.5338 67.0197
REMARK 3 T TENSOR
REMARK 3 T11: 1.1887 T22: 0.6643
REMARK 3 T33: 1.2905 T12: -0.2430
REMARK 3 T13: 0.2566 T23: 0.2015
REMARK 3 L TENSOR
REMARK 3 L11: 17.0267 L22: 11.7356
REMARK 3 L33: 60.3147 L12: -15.3145
REMARK 3 L13: 0.5138 L23: -40.7796
REMARK 3 S TENSOR
REMARK 3 S11: -1.6975 S12: -2.5563 S13: -2.6549
REMARK 3 S21: -0.9023 S22: 0.1819 S23: -0.0563
REMARK 3 S31: 4.4030 S32: -1.1396 S33: 1.5155
REMARK 3
REMARK 3 TLS GROUP : 8
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : D 501 D 501
REMARK 3 ORIGIN FOR THE GROUP (A): -16.1812 2.1757 62.6147
REMARK 3 T TENSOR
REMARK 3 T11: 0.6000 T22: 0.4455
REMARK 3 T33: 0.7374 T12: -0.0758
REMARK 3 T13: 0.2075 T23: -0.0699
REMARK 3 L TENSOR
REMARK 3 L11: 27.4490 L22: -11.1539
REMARK 3 L33: 32.9381 L12: -19.5904
REMARK 3 L13: 15.5985 L23: 16.8278
REMARK 3 S TENSOR
REMARK 3 S11: -0.1890 S12: 1.6892 S13: -2.5410
REMARK 3 S21: -0.2509 S22: -1.0275 S23: 1.3713
REMARK 3 S31: -0.5445 S32: 1.1689 S33: 1.2165
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : BABINET MODEL WITH MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.40
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1PY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-03.
REMARK 100 THE DEPOSITION ID IS D_1000019688.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 24-JAN-03
REMARK 200 TEMPERATURE (KELVIN) : 93
REMARK 200 PH : 5.9
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRL
REMARK 200 BEAMLINE : BL7-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.08
REMARK 200 MONOCHROMATOR : YALE MIRRORS
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : NULL
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : D*TREK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15034
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800
REMARK 200 RESOLUTION RANGE LOW (A) : 15.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.91
REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: AMORE
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 44.11
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M ZINC ACETATE, 0.075 M MAGNESIUM
REMARK 280 CHLORIDE, 18% (W/V) POLYETHYLENE GLYCOL 10K, 0.1M SODIUM
REMARK 280 CACODYLATE, PH 5.9. , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE
REMARK 280 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.22400
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PQS
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PQS
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 3
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PQS
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 4
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PQS
REMARK 350 APPLY THE FOLLOWING TO CHAINS: D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 5
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 6
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ALA A 1
REMARK 465 PRO A 2
REMARK 465 THR A 3
REMARK 465 SER A 4
REMARK 465 SER A 5
REMARK 465 LYS A 32
REMARK 465 ASN A 33
REMARK 465 GLN A 74
REMARK 465 SER A 75
REMARK 465 LYS A 76
REMARK 465 ASN A 77
REMARK 465 HIS A 79
REMARK 465 LEU A 80
REMARK 465 GLY A 98
REMARK 465 SER A 99
REMARK 465 ALA B 1
REMARK 465 PRO B 2
REMARK 465 THR B 3
REMARK 465 SER B 4
REMARK 465 SER B 5
REMARK 465 SER B 75
REMARK 465 LYS B 76
REMARK 465 ASN B 77
REMARK 465 PHE B 78
REMARK 465 HIS B 79
REMARK 465 LEU B 80
REMARK 465 GLY B 98
REMARK 465 SER B 99
REMARK 465 GLU B 100
REMARK 465 THR B 101
REMARK 465 THR B 102
REMARK 465 ALA C 1
REMARK 465 PRO C 2
REMARK 465 THR C 3
REMARK 465 SER C 4
REMARK 465 SER C 5
REMARK 465 SER C 6
REMARK 465 ASN C 33
REMARK 465 PRO C 34
REMARK 465 SER C 75
REMARK 465 LYS C 76
REMARK 465 ASN C 77
REMARK 465 PHE C 78
REMARK 465 HIS C 79
REMARK 465 LEU C 80
REMARK 465 ARG C 81
REMARK 465 SER C 99
REMARK 465 LEU C 132
REMARK 465 ALA D 1
REMARK 465 PRO D 2
REMARK 465 THR D 3
REMARK 465 SER D 4
REMARK 465 SER D 5
REMARK 465 SER D 75
REMARK 465 LYS D 76
REMARK 465 ASN D 77
REMARK 465 PHE D 78
REMARK 465 HIS D 79
REMARK 465 LEU D 80
REMARK 465 SER D 99
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 81 CG CD NE CZ NH1 NH2
REMARK 470 ARG B 81 CG CD NE CZ NH1 NH2
REMARK 470 ARG D 81 CG CD NE CZ NH1 NH2
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 THR A 7 OG1 CG2
REMARK 480 LYS A 8 CG CD CE NZ
REMARK 480 LYS A 9 CE NZ
REMARK 480 ILE A 28 CD1
REMARK 480 ASN A 30 OD1 ND2
REMARK 480 LYS A 49 CG CD CE NZ
REMARK 480 GLU A 52 CG CD OE1 OE2
REMARK 480 LYS A 54 CG CD CE NZ
REMARK 480 LYS A 64 CG CD CE NZ
REMARK 480 GLU A 68 CB CG CD OE1 OE2
REMARK 480 ARG A 83 CG CD NE CZ NH1 NH2
REMARK 480 LEU A 85 CG CD1 CD2
REMARK 480 LEU A 94 CG CD1 CD2
REMARK 480 GLU A 110 CG CD OE1 OE2
REMARK 480 SER A 127 OG
REMARK 480 SER A 130 OG
REMARK 480 THR B 7 CB OG1 CG2
REMARK 480 LYS B 8 CG CD CE NZ
REMARK 480 ASN B 30 CG OD1 ND2
REMARK 480 LYS B 32 CG CD CE NZ
REMARK 480 ASN B 33 CG OD1 ND2
REMARK 480 LYS B 48 CG CD CE NZ
REMARK 480 LYS B 49 CG CD CE NZ
REMARK 480 GLU B 52 CG CD OE1 OE2
REMARK 480 GLN B 57 CG CD OE1 NE2
REMARK 480 LYS B 64 CB CG CD CE NZ
REMARK 480 ASN B 71 CG OD1 ND2
REMARK 480 GLN B 74 CG CD OE1 NE2
REMARK 480 MET B 104 CB CG SD CE
REMARK 480 GLU B 106 CG CD OE1 OE2
REMARK 480 SER B 127 OG
REMARK 480 LYS C 8 CE NZ
REMARK 480 LYS C 32 CG CD CE NZ
REMARK 480 LYS C 35 CG CD CE NZ
REMARK 480 THR C 37 OG1 CG2
REMARK 480 LYS C 43 CG CD CE NZ
REMARK 480 LYS C 49 CD CE NZ
REMARK 480 GLU C 52 CG CD OE1 OE2
REMARK 480 LYS C 54 CG CD CE NZ
REMARK 480 ARG C 83 CG CD NE CZ NH1 NH2
REMARK 480 GLU C 95 CG CD OE1 OE2
REMARK 480 GLU C 100 CG CD OE1 OE2
REMARK 480 ASP C 109 CG OD1 OD2
REMARK 480 GLU C 110 CG CD OE1 OE2
REMARK 480 SER D 6 CB OG
REMARK 480 THR D 7 CB OG1 CG2
REMARK 480 LYS D 8 CG CD
REMARK 480 GLN D 11 CG CD OE1 NE2
REMARK 480 GLU D 52 CG CD OE1 OE2
REMARK 480 GLU D 100 CG CD OE1 OE2
REMARK 480 THR D 102 OG1 CG2
REMARK 480 MET D 104 CG SD CE
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 CE LYS B 8 CG2 THR C 131 1.82
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 CD2 LEU A 72 OE2 GLU D 100 2646 1.07
REMARK 500 OE1 GLU B 52 OG1 THR C 102 2656 1.41
REMARK 500 CD GLU B 52 OG1 THR C 102 2656 2.01
REMARK 500 CD2 LEU A 72 CD GLU D 100 2646 2.11
REMARK 500 NZ LYS B 8 OD1 ASN D 26 1655 2.16
REMARK 500 CE LYS B 8 OD1 ASN D 26 1655 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 THR A 7 CB THR A 7 CG2 0.382
REMARK 500 LYS A 8 CB LYS A 8 CG -0.297
REMARK 500 ASN A 30 CG ASN A 30 OD1 0.548
REMARK 500 LYS A 49 CB LYS A 49 CG 1.135
REMARK 500 LYS A 64 CB LYS A 64 CG -0.279
REMARK 500 ARG A 83 CB ARG A 83 CG -0.453
REMARK 500 LEU A 94 CB LEU A 94 CG -0.396
REMARK 500 SER A 127 CB SER A 127 OG -0.300
REMARK 500 SER A 130 CB SER A 130 OG -0.321
REMARK 500 THR B 7 CA THR B 7 CB 0.391
REMARK 500 ASN B 30 CB ASN B 30 CG 0.501
REMARK 500 LYS B 32 CB LYS B 32 CG 2.044
REMARK 500 ASN B 33 CB ASN B 33 CG 0.205
REMARK 500 LYS B 35 CB LYS B 35 CG -0.310
REMARK 500 LYS B 64 CB LYS B 64 CG 0.710
REMARK 500 ASN B 71 CB ASN B 71 CG -0.216
REMARK 500 GLN B 74 CB GLN B 74 CG 0.236
REMARK 500 MET B 104 CB MET B 104 CG 0.609
REMARK 500 LYS C 8 CD LYS C 8 CE 0.273
REMARK 500 LYS C 32 CB LYS C 32 CG 0.218
REMARK 500 LYS C 35 CB LYS C 35 CG 0.242
REMARK 500 THR C 37 CB THR C 37 OG1 0.337
REMARK 500 LYS C 49 CG LYS C 49 CD 0.405
REMARK 500 GLU C 52 CB GLU C 52 CG -0.143
REMARK 500 LYS C 54 CB LYS C 54 CG -0.213
REMARK 500 ARG C 83 CB ARG C 83 CG 1.074
REMARK 500 ARG C 83 C ASP C 84 N -0.340
REMARK 500 ASP C 84 C LEU C 85 N -0.277
REMARK 500 GLU C 100 CB GLU C 100 CG -0.233
REMARK 500 GLU C 110 CB GLU C 110 CG 0.357
REMARK 500 SER D 6 CA SER D 6 CB -0.147
REMARK 500 LYS D 8 CB LYS D 8 CG 0.652
REMARK 500 LYS D 8 CD LYS D 8 CE 0.383
REMARK 500 GLN D 11 CB GLN D 11 CG 0.518
REMARK 500 GLU D 52 CB GLU D 52 CG -0.394
REMARK 500 GLU D 100 CB GLU D 100 CG -0.194
REMARK 500 THR D 102 CB THR D 102 OG1 0.581
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 THR A 7 OG1 - CB - CG2 ANGL. DEV. = -23.3 DEGREES
REMARK 500 THR A 7 CA - CB - CG2 ANGL. DEV. = -8.6 DEGREES
REMARK 500 LYS A 8 CA - CB - CG ANGL. DEV. = -41.8 DEGREES
REMARK 500 LYS A 8 CB - CG - CD ANGL. DEV. = -39.1 DEGREES
REMARK 500 LYS A 9 CG - CD - CE ANGL. DEV. = 48.1 DEGREES
REMARK 500 LYS A 9 CD - CE - NZ ANGL. DEV. = 25.7 DEGREES
REMARK 500 ASN A 30 OD1 - CG - ND2 ANGL. DEV. = -30.7 DEGREES
REMARK 500 ASN A 30 CB - CG - OD1 ANGL. DEV. = -25.6 DEGREES
REMARK 500 LYS A 49 CA - CB - CG ANGL. DEV. = -27.9 DEGREES
REMARK 500 LYS A 64 CA - CB - CG ANGL. DEV. = 25.4 DEGREES
REMARK 500 LEU A 94 CB - CG - CD2 ANGL. DEV. = -19.0 DEGREES
REMARK 500 THR B 7 N - CA - CB ANGL. DEV. = 32.3 DEGREES
REMARK 500 THR B 7 CA - CB - CG2 ANGL. DEV. = 14.2 DEGREES
REMARK 500 ASN B 30 CA - CB - CG ANGL. DEV. = 19.4 DEGREES
REMARK 500 LYS B 32 CA - CB - CG ANGL. DEV. = -50.5 DEGREES
REMARK 500 ASN B 33 CB - CG - OD1 ANGL. DEV. = -30.3 DEGREES
REMARK 500 ASN B 33 CB - CG - ND2 ANGL. DEV. = 28.1 DEGREES
REMARK 500 LYS B 48 CA - CB - CG ANGL. DEV. = 28.2 DEGREES
REMARK 500 LYS B 64 CB - CG - CD ANGL. DEV. = -35.0 DEGREES
REMARK 500 ASN B 71 CA - CB - CG ANGL. DEV. = 14.1 DEGREES
REMARK 500 GLU B 106 CB - CG - CD ANGL. DEV. = -19.0 DEGREES
REMARK 500 LYS C 32 CA - CB - CG ANGL. DEV. = -19.0 DEGREES
REMARK 500 THR C 37 OG1 - CB - CG2 ANGL. DEV. = -19.6 DEGREES
REMARK 500 THR C 37 CA - CB - OG1 ANGL. DEV. = -22.7 DEGREES
REMARK 500 THR C 37 CA - CB - CG2 ANGL. DEV. = -18.4 DEGREES
REMARK 500 GLU C 52 CA - CB - CG ANGL. DEV. = -15.6 DEGREES
REMARK 500 ARG C 83 CA - CB - CG ANGL. DEV. = -25.5 DEGREES
REMARK 500 ARG C 83 O - C - N ANGL. DEV. = 11.8 DEGREES
REMARK 500 ASP C 84 O - C - N ANGL. DEV. = -13.4 DEGREES
REMARK 500 LEU C 85 N - CA - CB ANGL. DEV. = 12.7 DEGREES
REMARK 500 LEU C 85 N - CA - C ANGL. DEV. = -24.3 DEGREES
REMARK 500 SER D 6 N - CA - CB ANGL. DEV. = 13.8 DEGREES
REMARK 500 LYS D 8 CA - CB - CG ANGL. DEV. = -20.9 DEGREES
REMARK 500 LYS D 8 CB - CG - CD ANGL. DEV. = 39.2 DEGREES
REMARK 500 LYS D 8 CG - CD - CE ANGL. DEV. = -39.9 DEGREES
REMARK 500 LYS D 8 CD - CE - NZ ANGL. DEV. = -54.8 DEGREES
REMARK 500 GLU D 100 CA - CB - CG ANGL. DEV. = -52.8 DEGREES
REMARK 500 GLU D 100 CB - CG - CD ANGL. DEV. = -39.3 DEGREES
REMARK 500 THR D 102 OG1 - CB - CG2 ANGL. DEV. = -27.5 DEGREES
REMARK 500 MET D 104 CA - CB - CG ANGL. DEV. = -17.6 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 THR A 131 45.95 -96.71
REMARK 500 ASN B 33 -88.48 12.72
REMARK 500 MET C 39 -40.77 70.36
REMARK 500 LEU C 85 -48.59 -135.34
REMARK 500 THR D 51 -33.01 -135.93
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ASN A 30 0.28 SIDE CHAIN
REMARK 500 ASN B 30 0.17 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B 801 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU B 15 OE1
REMARK 620 2 GLU B 15 OE2 47.7
REMARK 620 N 1
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B 601 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS B 16 NE2
REMARK 620 2 ASP B 20 OD1 103.2
REMARK 620 3 HIS D 16 NE2 80.7 109.4
REMARK 620 N 1 2
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 701
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 801
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FRH A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FRH B 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FRH C 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FRH D 501
DBREF 1PY2 A 1 132 UNP P60568 IL2_HUMAN 21 152
DBREF 1PY2 B 1 132 UNP P60568 IL2_HUMAN 21 152
DBREF 1PY2 C 1 132 UNP P60568 IL2_HUMAN 21 152
DBREF 1PY2 D 1 132 UNP P60568 IL2_HUMAN 21 152
SEQRES 1 A 132 ALA PRO THR SER SER SER THR LYS LYS THR GLN LEU GLN
SEQRES 2 A 132 LEU GLU HIS LEU LEU LEU ASP LEU GLN MET ILE LEU ASN
SEQRES 3 A 132 GLY ILE ASN ASN TYR LYS ASN PRO LYS LEU THR ARG MET
SEQRES 4 A 132 LEU THR PHE LYS PHE TYR MET PRO LYS LYS ALA THR GLU
SEQRES 5 A 132 LEU LYS HIS LEU GLN CYS LEU GLU GLU GLU LEU LYS PRO
SEQRES 6 A 132 LEU GLU GLU VAL LEU ASN LEU ALA GLN SER LYS ASN PHE
SEQRES 7 A 132 HIS LEU ARG PRO ARG ASP LEU ILE SER ASN ILE ASN VAL
SEQRES 8 A 132 ILE VAL LEU GLU LEU LYS GLY SER GLU THR THR PHE MET
SEQRES 9 A 132 CYS GLU TYR ALA ASP GLU THR ALA THR ILE VAL GLU PHE
SEQRES 10 A 132 LEU ASN ARG TRP ILE THR PHE CYS GLN SER ILE ILE SER
SEQRES 11 A 132 THR LEU
SEQRES 1 B 132 ALA PRO THR SER SER SER THR LYS LYS THR GLN LEU GLN
SEQRES 2 B 132 LEU GLU HIS LEU LEU LEU ASP LEU GLN MET ILE LEU ASN
SEQRES 3 B 132 GLY ILE ASN ASN TYR LYS ASN PRO LYS LEU THR ARG MET
SEQRES 4 B 132 LEU THR PHE LYS PHE TYR MET PRO LYS LYS ALA THR GLU
SEQRES 5 B 132 LEU LYS HIS LEU GLN CYS LEU GLU GLU GLU LEU LYS PRO
SEQRES 6 B 132 LEU GLU GLU VAL LEU ASN LEU ALA GLN SER LYS ASN PHE
SEQRES 7 B 132 HIS LEU ARG PRO ARG ASP LEU ILE SER ASN ILE ASN VAL
SEQRES 8 B 132 ILE VAL LEU GLU LEU LYS GLY SER GLU THR THR PHE MET
SEQRES 9 B 132 CYS GLU TYR ALA ASP GLU THR ALA THR ILE VAL GLU PHE
SEQRES 10 B 132 LEU ASN ARG TRP ILE THR PHE CYS GLN SER ILE ILE SER
SEQRES 11 B 132 THR LEU
SEQRES 1 C 132 ALA PRO THR SER SER SER THR LYS LYS THR GLN LEU GLN
SEQRES 2 C 132 LEU GLU HIS LEU LEU LEU ASP LEU GLN MET ILE LEU ASN
SEQRES 3 C 132 GLY ILE ASN ASN TYR LYS ASN PRO LYS LEU THR ARG MET
SEQRES 4 C 132 LEU THR PHE LYS PHE TYR MET PRO LYS LYS ALA THR GLU
SEQRES 5 C 132 LEU LYS HIS LEU GLN CYS LEU GLU GLU GLU LEU LYS PRO
SEQRES 6 C 132 LEU GLU GLU VAL LEU ASN LEU ALA GLN SER LYS ASN PHE
SEQRES 7 C 132 HIS LEU ARG PRO ARG ASP LEU ILE SER ASN ILE ASN VAL
SEQRES 8 C 132 ILE VAL LEU GLU LEU LYS GLY SER GLU THR THR PHE MET
SEQRES 9 C 132 CYS GLU TYR ALA ASP GLU THR ALA THR ILE VAL GLU PHE
SEQRES 10 C 132 LEU ASN ARG TRP ILE THR PHE CYS GLN SER ILE ILE SER
SEQRES 11 C 132 THR LEU
SEQRES 1 D 132 ALA PRO THR SER SER SER THR LYS LYS THR GLN LEU GLN
SEQRES 2 D 132 LEU GLU HIS LEU LEU LEU ASP LEU GLN MET ILE LEU ASN
SEQRES 3 D 132 GLY ILE ASN ASN TYR LYS ASN PRO LYS LEU THR ARG MET
SEQRES 4 D 132 LEU THR PHE LYS PHE TYR MET PRO LYS LYS ALA THR GLU
SEQRES 5 D 132 LEU LYS HIS LEU GLN CYS LEU GLU GLU GLU LEU LYS PRO
SEQRES 6 D 132 LEU GLU GLU VAL LEU ASN LEU ALA GLN SER LYS ASN PHE
SEQRES 7 D 132 HIS LEU ARG PRO ARG ASP LEU ILE SER ASN ILE ASN VAL
SEQRES 8 D 132 ILE VAL LEU GLU LEU LYS GLY SER GLU THR THR PHE MET
SEQRES 9 D 132 CYS GLU TYR ALA ASP GLU THR ALA THR ILE VAL GLU PHE
SEQRES 10 D 132 LEU ASN ARG TRP ILE THR PHE CYS GLN SER ILE ILE SER
SEQRES 11 D 132 THR LEU
HET FRH A 201 45
HET ZN B 601 1
HET ZN B 801 1
HET FRH B 301 45
HET ZN C 701 1
HET FRH C 401 45
HET FRH D 501 45
HETNAM FRH 5-[2,3-DICHLORO-4-(5-{1-[2-(2-GUANIDINO-4-METHYL-
HETNAM 2 FRH PENTANOYLAMINO)-ACETYL]-PIPERIDIN-4-YL}-1-METHYL-1H-
HETNAM 3 FRH PYRAZOL-3-YL)-PHENOXYMETHYL]-FURAN-2-CARBOXYLIC ACID
HETNAM ZN ZINC ION
FORMUL 5 FRH 4(C30 H37 CL2 N7 O6)
FORMUL 6 ZN 3(ZN 2+)
HELIX 1 1 SER A 6 ASN A 30 1 25
HELIX 2 2 PRO A 34 LEU A 40 1 7
HELIX 3 3 GLU A 52 HIS A 55 5 4
HELIX 4 4 LEU A 56 GLU A 62 1 7
HELIX 5 5 GLU A 62 ALA A 73 1 12
HELIX 6 6 ARG A 81 LYS A 97 1 17
HELIX 7 7 THR A 113 THR A 131 1 19
HELIX 8 8 SER B 6 ASN B 30 1 25
HELIX 9 9 LYS B 32 LEU B 40 1 9
HELIX 10 10 GLU B 52 HIS B 55 5 4
HELIX 11 11 LEU B 56 GLU B 62 1 7
HELIX 12 12 GLU B 62 ALA B 73 1 12
HELIX 13 13 ARG B 81 LYS B 97 1 17
HELIX 14 14 THR B 113 LEU B 132 1 20
HELIX 15 15 THR C 7 ASN C 29 1 23
HELIX 16 16 GLU C 52 HIS C 55 5 4
HELIX 17 17 LEU C 56 GLU C 61 1 6
HELIX 18 18 GLU C 62 ALA C 73 1 12
HELIX 19 19 LEU C 85 GLY C 98 1 14
HELIX 20 20 THR C 113 THR C 131 1 19
HELIX 21 21 SER D 6 ASN D 30 1 25
HELIX 22 22 LYS D 32 LEU D 40 1 9
HELIX 23 23 GLU D 52 HIS D 55 5 4
HELIX 24 24 LEU D 56 GLU D 62 1 7
HELIX 25 25 GLU D 62 GLN D 74 1 13
HELIX 26 26 ARG D 81 GLY D 98 1 18
HELIX 27 27 THR D 113 LEU D 132 1 20
SSBOND 1 CYS A 58 CYS A 105 1555 1555 2.03
SSBOND 2 CYS B 58 CYS B 105 1555 1555 2.03
SSBOND 3 CYS C 58 CYS C 105 1555 1555 1.48
SSBOND 4 CYS D 58 CYS D 105 1555 1555 2.03
LINK OE1 GLU B 15 ZN ZN B 801 1555 1555 2.68
LINK OE2 GLU B 15 ZN ZN B 801 1555 1555 2.75
LINK NE2 HIS B 16 ZN ZN B 601 1555 1555 2.34
LINK OD1 ASP B 20 ZN ZN B 601 1555 1555 2.25
LINK ZN ZN B 601 NE2 HIS D 16 1555 1655 2.77
LINK NE2 HIS C 16 ZN ZN C 701 1555 1555 2.22
SITE 1 AC1 3 HIS B 16 ASP B 20 HIS D 16
SITE 1 AC2 1 HIS C 16
SITE 1 AC3 1 GLU B 15
SITE 1 AC4 11 PRO A 34 ARG A 38 MET A 39 THR A 41
SITE 2 AC4 11 PHE A 42 LYS A 43 PHE A 44 TYR A 45
SITE 3 AC4 11 GLU A 62 PRO A 65 LEU A 72
SITE 1 AC5 13 PRO B 34 LYS B 35 ARG B 38 MET B 39
SITE 2 AC5 13 THR B 41 PHE B 42 LYS B 43 TYR B 45
SITE 3 AC5 13 GLU B 62 PRO B 65 VAL B 69 LEU B 72
SITE 4 AC5 13 ALA B 73
SITE 1 AC6 9 ARG C 38 MET C 39 THR C 41 PHE C 42
SITE 2 AC6 9 LYS C 43 TYR C 45 GLU C 62 PRO C 65
SITE 3 AC6 9 LEU C 72
SITE 1 AC7 19 GLU A 106 ASN B 29 LEU B 36 LEU B 40
SITE 2 AC7 19 THR B 113 GLU B 116 ASN B 119 PRO D 34
SITE 3 AC7 19 LYS D 35 ARG D 38 MET D 39 THR D 41
SITE 4 AC7 19 PHE D 42 LYS D 43 TYR D 45 GLU D 62
SITE 5 AC7 19 PRO D 65 LEU D 72 THR D 111
CRYST1 59.982 52.448 89.469 90.00 106.34 90.00 P 1 21 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016672 0.000000 0.004888 0.00000
SCALE2 0.000000 0.019067 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011648 0.00000