HEADER PHOSPHOTRANSFERASE 25-FEB-99 1PYM TITLE PHOSPHOENOLPYRUVATE MUTASE FROM MOLLUSK IN WITH BOUND MG2-OXALATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (PHOSPHOENOLPYRUVATE MUTASE); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHOENOLPYRUVATE PHOSPHOMUTASE; COMPND 5 EC: 5.4.2.9; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: WITH BOUND MG2+-OXALATE INHIBITOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYTILUS EDULIS; SOURCE 3 ORGANISM_TAXID: 6550; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET24A(+) KEYWDS PHOSPHOTRANSFERASE, PHOSPHOMUTASE, P-C BOND FORMATION EXPDTA X-RAY DIFFRACTION AUTHOR K.HUANG,Z.LI,O.HERZBERG REVDAT 7 06-NOV-24 1PYM 1 REMARK REVDAT 6 27-DEC-23 1PYM 1 REMARK LINK REVDAT 5 04-OCT-17 1PYM 1 REMARK REVDAT 4 13-JUL-11 1PYM 1 VERSN REVDAT 3 24-FEB-09 1PYM 1 VERSN REVDAT 2 01-APR-03 1PYM 1 JRNL REVDAT 1 21-JUL-99 1PYM 0 JRNL AUTH K.HUANG,Z.LI,Y.JIA,D.DUNAWAY-MARIANO,O.HERZBERG JRNL TITL HELIX SWAPPING BETWEEN TWO ALPHA/BETA BARRELS: CRYSTAL JRNL TITL 2 STRUCTURE OF PHOSPHOENOLPYRUVATE MUTASE WITH BOUND JRNL TITL 3 MG(2+)-OXALATE. JRNL REF STRUCTURE FOLD.DES. V. 7 539 1999 JRNL REFN ISSN 0969-2126 JRNL PMID 10378273 JRNL DOI 10.1016/S0969-2126(99)80070-7 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.6 REMARK 3 NUMBER OF REFLECTIONS : 43980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5207 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4548 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.021 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE 0.95A DATA SET WAS REFINED REMARK 4 REMARK 4 1PYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-99. REMARK 100 THE DEPOSITION ID IS D_1000000544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JAN-98 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787,0.9784,0.9500 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS - B1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49056 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, SHELX, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.45000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.45000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.55000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.20000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.55000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.45000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.20000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.55000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.45000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.20000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.55000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 22410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 90.40000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 136.35000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1209 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1215 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1233 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1163 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1232 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1282 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1285 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 294 REMARK 465 ASN B 295 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 204 CD LYS A 204 CE 0.154 REMARK 500 GLU B 69 CD GLU B 69 OE1 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 57 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 175 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 175 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ALA A 238 N - CA - C ANGL. DEV. = 18.2 DEGREES REMARK 500 ARG B 33 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 57 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 57 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 LEU B 71 CA - CB - CG ANGL. DEV. = -17.4 DEGREES REMARK 500 ARG B 106 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 180 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ALA B 238 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 36.80 -141.62 REMARK 500 ASP A 87 -124.52 49.45 REMARK 500 LYS A 116 -161.69 -124.09 REMARK 500 PRO A 216 31.37 -85.10 REMARK 500 ASN A 239 21.72 -162.43 REMARK 500 SER B 59 29.46 -141.26 REMARK 500 ASP B 87 -131.50 46.12 REMARK 500 PRO B 216 18.16 -69.45 REMARK 500 ASN B 239 19.16 -157.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 175 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 85 OD2 REMARK 620 2 OXL A1001 O3 91.9 REMARK 620 3 OXL A1001 O4 77.0 74.4 REMARK 620 4 HOH A1073 O 88.5 91.9 159.5 REMARK 620 5 HOH A1086 O 173.1 87.5 96.3 98.4 REMARK 620 6 HOH A1158 O 88.9 172.1 98.1 96.0 90.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1004 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 85 OD2 REMARK 620 2 OXL B1002 O3 92.4 REMARK 620 3 OXL B1002 O4 79.0 74.5 REMARK 620 4 HOH B1089 O 91.8 171.4 99.0 REMARK 620 5 HOH B1094 O 90.6 89.7 160.5 97.8 REMARK 620 6 HOH B1115 O 176.9 88.3 98.3 87.2 92.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: PEP REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CATALYTIC SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXL B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1004 REMARK 999 REMARK 999 SEQUENCE REMARK 999 NOT YET PUBLISHED DBREF 1PYM A 2 295 UNP P56839 PEPM_MYTED 1 294 DBREF 1PYM B 2 295 UNP P56839 PEPM_MYTED 1 294 SEQRES 1 A 295 MET SER THR LYS VAL LYS LYS THR THR GLN LEU LYS GLN SEQRES 2 A 295 MSE LEU ASN SER LYS ASP LEU GLU PHE ILE MSE GLU ALA SEQRES 3 A 295 HIS ASN GLY LEU SER ALA ARG ILE VAL GLN GLU ALA GLY SEQRES 4 A 295 PHE LYS GLY ILE TRP GLY SER GLY LEU SER VAL SER ALA SEQRES 5 A 295 GLN LEU GLY VAL ARG ASP SER ASN GLU ALA SER TRP THR SEQRES 6 A 295 GLN VAL VAL GLU VAL LEU GLU PHE MSE SER ASP ALA SER SEQRES 7 A 295 ASP VAL PRO ILE LEU LEU ASP ALA ASP THR GLY TYR GLY SEQRES 8 A 295 ASN PHE ASN ASN ALA ARG ARG LEU VAL ARG LYS LEU GLU SEQRES 9 A 295 ASP ARG GLY VAL ALA GLY ALA CYS LEU GLU ASP LYS LEU SEQRES 10 A 295 PHE PRO LYS THR ASN SER LEU HIS ASP GLY ARG ALA GLN SEQRES 11 A 295 PRO LEU ALA ASP ILE GLU GLU PHE ALA LEU LYS ILE LYS SEQRES 12 A 295 ALA CYS LYS ASP SER GLN THR ASP PRO ASP PHE CYS ILE SEQRES 13 A 295 VAL ALA ARG VAL GLU ALA PHE ILE ALA GLY TRP GLY LEU SEQRES 14 A 295 ASP GLU ALA LEU LYS ARG ALA GLU ALA TYR ARG ASN ALA SEQRES 15 A 295 GLY ALA ASP ALA ILE LEU MSE HIS SER LYS LYS ALA ASP SEQRES 16 A 295 PRO SER ASP ILE GLU ALA PHE MSE LYS ALA TRP ASN ASN SEQRES 17 A 295 GLN GLY PRO VAL VAL ILE VAL PRO THR LYS TYR TYR LYS SEQRES 18 A 295 THR PRO THR ASP HIS PHE ARG ASP MSE GLY VAL SER MSE SEQRES 19 A 295 VAL ILE TRP ALA ASN HIS ASN LEU ARG ALA SER VAL SER SEQRES 20 A 295 ALA ILE GLN GLN THR THR LYS GLN ILE TYR ASP ASP GLN SEQRES 21 A 295 SER LEU VAL ASN VAL GLU ASP LYS ILE VAL SER VAL LYS SEQRES 22 A 295 GLU ILE PHE ARG LEU GLN ARG ASP ASP GLU LEU VAL GLN SEQRES 23 A 295 ALA GLU ASP LYS TYR LEU PRO LYS ASN SEQRES 1 B 295 MET SER THR LYS VAL LYS LYS THR THR GLN LEU LYS GLN SEQRES 2 B 295 MSE LEU ASN SER LYS ASP LEU GLU PHE ILE MSE GLU ALA SEQRES 3 B 295 HIS ASN GLY LEU SER ALA ARG ILE VAL GLN GLU ALA GLY SEQRES 4 B 295 PHE LYS GLY ILE TRP GLY SER GLY LEU SER VAL SER ALA SEQRES 5 B 295 GLN LEU GLY VAL ARG ASP SER ASN GLU ALA SER TRP THR SEQRES 6 B 295 GLN VAL VAL GLU VAL LEU GLU PHE MSE SER ASP ALA SER SEQRES 7 B 295 ASP VAL PRO ILE LEU LEU ASP ALA ASP THR GLY TYR GLY SEQRES 8 B 295 ASN PHE ASN ASN ALA ARG ARG LEU VAL ARG LYS LEU GLU SEQRES 9 B 295 ASP ARG GLY VAL ALA GLY ALA CYS LEU GLU ASP LYS LEU SEQRES 10 B 295 PHE PRO LYS THR ASN SER LEU HIS ASP GLY ARG ALA GLN SEQRES 11 B 295 PRO LEU ALA ASP ILE GLU GLU PHE ALA LEU LYS ILE LYS SEQRES 12 B 295 ALA CYS LYS ASP SER GLN THR ASP PRO ASP PHE CYS ILE SEQRES 13 B 295 VAL ALA ARG VAL GLU ALA PHE ILE ALA GLY TRP GLY LEU SEQRES 14 B 295 ASP GLU ALA LEU LYS ARG ALA GLU ALA TYR ARG ASN ALA SEQRES 15 B 295 GLY ALA ASP ALA ILE LEU MSE HIS SER LYS LYS ALA ASP SEQRES 16 B 295 PRO SER ASP ILE GLU ALA PHE MSE LYS ALA TRP ASN ASN SEQRES 17 B 295 GLN GLY PRO VAL VAL ILE VAL PRO THR LYS TYR TYR LYS SEQRES 18 B 295 THR PRO THR ASP HIS PHE ARG ASP MSE GLY VAL SER MSE SEQRES 19 B 295 VAL ILE TRP ALA ASN HIS ASN LEU ARG ALA SER VAL SER SEQRES 20 B 295 ALA ILE GLN GLN THR THR LYS GLN ILE TYR ASP ASP GLN SEQRES 21 B 295 SER LEU VAL ASN VAL GLU ASP LYS ILE VAL SER VAL LYS SEQRES 22 B 295 GLU ILE PHE ARG LEU GLN ARG ASP ASP GLU LEU VAL GLN SEQRES 23 B 295 ALA GLU ASP LYS TYR LEU PRO LYS ASN MODRES 1PYM MSE A 14 MET SELENOMETHIONINE MODRES 1PYM MSE A 24 MET SELENOMETHIONINE MODRES 1PYM MSE A 74 MET SELENOMETHIONINE MODRES 1PYM MSE A 189 MET SELENOMETHIONINE MODRES 1PYM MSE A 203 MET SELENOMETHIONINE MODRES 1PYM MSE A 230 MET SELENOMETHIONINE MODRES 1PYM MSE A 234 MET SELENOMETHIONINE MODRES 1PYM MSE B 14 MET SELENOMETHIONINE MODRES 1PYM MSE B 24 MET SELENOMETHIONINE MODRES 1PYM MSE B 74 MET SELENOMETHIONINE MODRES 1PYM MSE B 189 MET SELENOMETHIONINE MODRES 1PYM MSE B 203 MET SELENOMETHIONINE MODRES 1PYM MSE B 230 MET SELENOMETHIONINE MODRES 1PYM MSE B 234 MET SELENOMETHIONINE HET MSE A 14 8 HET MSE A 24 8 HET MSE A 74 8 HET MSE A 189 8 HET MSE A 203 8 HET MSE A 230 8 HET MSE A 234 8 HET MSE B 14 8 HET MSE B 24 8 HET MSE B 74 8 HET MSE B 189 8 HET MSE B 203 8 HET MSE B 230 8 HET MSE B 234 8 HET OXL A1001 6 HET MG A1003 1 HET OXL B1002 6 HET MG B1004 1 HETNAM MSE SELENOMETHIONINE HETNAM OXL OXALATE ION HETNAM MG MAGNESIUM ION FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 OXL 2(C2 O4 2-) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *590(H2 O) HELIX 1 1 LYS A 7 ASN A 16 1 10 HELIX 2 2 GLY A 29 GLU A 37 1 9 HELIX 3 3 GLY A 47 LEU A 54 1 8 HELIX 4 4 TRP A 64 ALA A 77 1 14 HELIX 5 5 PHE A 93 ARG A 106 1 14 HELIX 6 6 ILE A 135 ASP A 147 1 13 HELIX 7 7 LEU A 169 ASN A 181 1 13 HELIX 8 8 SER A 197 ALA A 205 1 9 HELIX 9 9 THR A 224 ARG A 228 1 5 HELIX 10 10 HIS A 240 ASP A 259 1 20 HELIX 11 11 VAL A 263 GLU A 266 1 4 HELIX 12 12 VAL A 272 LEU A 278 1 7 HELIX 13 13 ASP A 281 TYR A 291 1 11 HELIX 14 14 LYS B 7 ASN B 16 1 10 HELIX 15 15 GLY B 29 ALA B 38 1 10 HELIX 16 16 GLY B 47 LEU B 54 1 8 HELIX 17 17 TRP B 64 ALA B 77 1 14 HELIX 18 18 PHE B 93 ARG B 106 1 14 HELIX 19 19 ILE B 135 SER B 148 1 14 HELIX 20 20 LEU B 169 ASN B 181 1 13 HELIX 21 21 SER B 197 ALA B 205 1 9 HELIX 22 22 THR B 224 ARG B 228 1 5 HELIX 23 23 HIS B 240 ASP B 259 1 20 HELIX 24 24 VAL B 263 GLU B 266 1 4 HELIX 25 25 VAL B 272 LEU B 278 1 7 HELIX 26 26 ASP B 281 TYR B 291 1 11 SHEET 1 A 5 GLY A 42 GLY A 45 0 SHEET 2 A 5 PRO A 81 ASP A 85 1 N PRO A 81 O ILE A 43 SHEET 3 A 5 GLY A 110 GLU A 114 1 N GLY A 110 O LEU A 84 SHEET 4 A 5 CYS A 155 ARG A 159 1 N CYS A 155 O ALA A 111 SHEET 5 A 5 ALA A 186 LEU A 188 1 N ALA A 186 O ALA A 158 SHEET 1 B 5 GLY B 42 GLY B 45 0 SHEET 2 B 5 PRO B 81 ASP B 85 1 N PRO B 81 O ILE B 43 SHEET 3 B 5 GLY B 110 GLU B 114 1 N GLY B 110 O LEU B 84 SHEET 4 B 5 CYS B 155 ARG B 159 1 N CYS B 155 O ALA B 111 SHEET 5 B 5 ALA B 186 LEU B 188 1 N ALA B 186 O ALA B 158 LINK C GLN A 13 N MSE A 14 1555 1555 1.33 LINK C MSE A 14 N LEU A 15 1555 1555 1.33 LINK C ILE A 23 N MSE A 24 1555 1555 1.32 LINK C MSE A 24 N GLU A 25 1555 1555 1.32 LINK C PHE A 73 N MSE A 74 1555 1555 1.33 LINK C MSE A 74 N SER A 75 1555 1555 1.35 LINK C LEU A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N HIS A 190 1555 1555 1.33 LINK C PHE A 202 N MSE A 203 1555 1555 1.33 LINK C MSE A 203 N LYS A 204 1555 1555 1.34 LINK C ASP A 229 N MSE A 230 1555 1555 1.34 LINK C MSE A 230 N GLY A 231 1555 1555 1.33 LINK C SER A 233 N MSE A 234 1555 1555 1.32 LINK C MSE A 234 N VAL A 235 1555 1555 1.33 LINK C GLN B 13 N MSE B 14 1555 1555 1.32 LINK C MSE B 14 N LEU B 15 1555 1555 1.33 LINK C ILE B 23 N MSE B 24 1555 1555 1.31 LINK C MSE B 24 N GLU B 25 1555 1555 1.33 LINK C PHE B 73 N MSE B 74 1555 1555 1.34 LINK C MSE B 74 N SER B 75 1555 1555 1.33 LINK C LEU B 188 N MSE B 189 1555 1555 1.33 LINK C MSE B 189 N HIS B 190 1555 1555 1.33 LINK C PHE B 202 N MSE B 203 1555 1555 1.33 LINK C MSE B 203 N LYS B 204 1555 1555 1.34 LINK C ASP B 229 N MSE B 230 1555 1555 1.33 LINK C MSE B 230 N GLY B 231 1555 1555 1.34 LINK C SER B 233 N MSE B 234 1555 1555 1.32 LINK C MSE B 234 N VAL B 235 1555 1555 1.33 LINK OD2 ASP A 85 MG MG A1003 1555 1555 2.18 LINK O3 OXL A1001 MG MG A1003 1555 1555 2.19 LINK O4 OXL A1001 MG MG A1003 1555 1555 2.18 LINK MG MG A1003 O HOH A1073 1555 1555 2.12 LINK MG MG A1003 O HOH A1086 1555 1555 2.11 LINK MG MG A1003 O HOH A1158 1555 1555 2.23 LINK OD2 ASP B 85 MG MG B1004 1555 1555 2.18 LINK O3 OXL B1002 MG MG B1004 1555 1555 2.32 LINK O4 OXL B1002 MG MG B1004 1555 1555 2.25 LINK MG MG B1004 O HOH B1089 1555 1555 2.19 LINK MG MG B1004 O HOH B1094 1555 1555 2.18 LINK MG MG B1004 O HOH B1115 1555 1555 2.14 CISPEP 1 PHE A 118 PRO A 119 0 -1.06 CISPEP 2 PHE B 118 PRO B 119 0 -2.03 SITE 1 PEP 16 ASP A 58 ASP A 85 ASP A 87 GLU A 114 SITE 2 PEP 16 ARG A 159 LYS A 120 GLY A 47 LEU A 48 SITE 3 PEP 16 ASP B 58 ASP B 85 ASP B 87 GLU B 114 SITE 4 PEP 16 ARG B 159 LYS B 120 GLY B 47 LEU B 48 SITE 1 AC1 12 TRP A 44 SER A 46 GLY A 47 LEU A 48 SITE 2 AC1 12 ASP A 85 ARG A 159 ALA A 238 MG A1003 SITE 3 AC1 12 HOH A1073 HOH A1086 HOH A1109 HOH A1245 SITE 1 AC2 10 TRP B 44 SER B 46 GLY B 47 LEU B 48 SITE 2 AC2 10 ASP B 85 ARG B 159 ALA B 238 MG B1004 SITE 3 AC2 10 HOH B1010 HOH B1144 SITE 1 AC3 5 ASP A 85 OXL A1001 HOH A1073 HOH A1086 SITE 2 AC3 5 HOH A1158 SITE 1 AC4 5 ASP B 85 OXL B1002 HOH B1089 HOH B1094 SITE 2 AC4 5 HOH B1115 CRYST1 90.400 131.100 90.900 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011062 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007628 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011001 0.00000