HEADER TOXIN 11-JUL-03 1PZJ TITLE CHOLERA TOXIN B-PENTAMER COMPLEXED WITH NITROPHENYL GALACTOSIDE 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLERA TOXIN B SUBUNIT; COMPND 3 CHAIN: D, E, F, G, H; COMPND 4 SYNONYM: CTB; CHOLERA TOXIN B PROTEIN; CHOLERA TOXIN SUBUNIT B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: CAA41591; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS PENTAMER, MONOVALENT, TOXIN, INHIBITOR, CHOLERA EXPDTA X-RAY DIFFRACTION AUTHOR D.D.MITCHELL,J.C.PICKENS,K.KOROTKOV,E.FAN,W.G.J.HOL REVDAT 5 06-NOV-24 1PZJ 1 REMARK REVDAT 4 16-AUG-23 1PZJ 1 REMARK REVDAT 3 24-JUL-19 1PZJ 1 REMARK REVDAT 2 24-FEB-09 1PZJ 1 VERSN REVDAT 1 09-MAR-04 1PZJ 0 JRNL AUTH D.D.MITCHELL,J.C.PICKENS,K.KOROTKOV,E.FAN,W.G.J.HOL JRNL TITL 3,5-SUBSTITUTED PHENYL GALACTOSIDES AS LEADS IN DESIGNING JRNL TITL 2 EFFECTIVE CHOLERA TOXIN ANTAGONISTS; SYNTHESIS AND JRNL TITL 3 CRYSTALLOGRAPHIC STUDIES JRNL REF BIOORG.MED.CHEM. V. 12 907 2004 JRNL REFN ISSN 0968-0896 JRNL PMID 14980603 JRNL DOI 10.1016/J.BMC.2003.12.019 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 80755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.117 REMARK 3 R VALUE (WORKING SET) : 0.115 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4274 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5733 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1010 REMARK 3 BIN FREE R VALUE SET COUNT : 317 REMARK 3 BIN FREE R VALUE : 0.1730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4070 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 185 REMARK 3 SOLVENT ATOMS : 650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.793 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4380 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3870 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5930 ; 1.485 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9116 ; 1.111 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 6.914 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 680 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4616 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 768 ; 0.018 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 846 ; 0.228 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4630 ; 0.280 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2331 ; 0.099 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 816 ; 0.174 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.190 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.262 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 37 ; 0.190 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2577 ; 2.299 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4190 ; 3.207 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1793 ; 4.971 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1715 ; 6.726 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4370 ; 2.462 ; 4.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 650 ;21.284 ;20.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4280 ; 6.274 ;20.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1PZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000019727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : TRUNCATE, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85036 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.180 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 19.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.46 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.11500 REMARK 200 FOR SHELL : 8.601 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: XTALVIEW REMARK 200 STARTING MODEL: 3CHB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 42% PEG 350, 50 MM NACL, 100 MM TRIS REMARK 280 -HCL PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.87700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.99900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.87700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.99900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH F1586 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 1265 O HOH H 1462 2.02 REMARK 500 O HOH G 1158 O HOH G 1482 2.04 REMARK 500 CD1 ILE F 17 O HOH F 1107 2.07 REMARK 500 O HOH H 1437 O HOH H 1496 2.07 REMARK 500 OG1 THR H 1 O HOH H 1428 2.10 REMARK 500 O HOH G 1158 O HOH G 1464 2.14 REMARK 500 O HOH F 1060 O HOH F 1262 2.15 REMARK 500 O HOH E 1178 O HOH E 1455 2.17 REMARK 500 O HOH F 1271 O HOH F 1413 2.18 REMARK 500 NE2 GLN G 3 O HOH G 1625 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP F 59 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU D 83 -70.61 -77.94 REMARK 500 ASN F 21 53.22 39.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15B D 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE J15 E 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE J15 F 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15B G 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15B H 108 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PZI RELATED DB: PDB REMARK 900 RELATED ID: 1PZK RELATED DB: PDB DBREF 1PZJ D 1 103 UNP Q57193 Q57193_VIBCH 22 124 DBREF 1PZJ E 1 103 UNP Q57193 Q57193_VIBCH 22 124 DBREF 1PZJ F 1 103 UNP Q57193 Q57193_VIBCH 22 124 DBREF 1PZJ G 1 103 UNP Q57193 Q57193_VIBCH 22 124 DBREF 1PZJ H 1 103 UNP Q57193 Q57193_VIBCH 22 124 SEQRES 1 D 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 D 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 D 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 D 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 D 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 D 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 D 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 D 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 E 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 E 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 E 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 E 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 E 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 E 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 E 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 E 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 F 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 F 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 F 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 F 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 F 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 F 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 F 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 F 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 G 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 G 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 G 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 G 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 G 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 G 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 G 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 G 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 H 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 H 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 H 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 H 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 H 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 H 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 H 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 H 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN HET 15B D 104 37 HET J15 E 105 37 HET J15 F 106 37 HET 15B G 107 37 HET 15B H 108 37 HETNAM 15B N-{3-[4-(3-AMINO-PROPYL)-PIPERAZIN-1-YL]-PROPYL}-3- HETNAM 2 15B NITRO-5-(GALACTOPYRANOSYL)-BETA-BENZAMIDE HETNAM J15 N-{3-[4-(3-AMINO-PROPYL)-PIPERAZIN-1-YL]-PROPYL}-3- HETNAM 2 J15 NITRO-5-(GALACTOPYRANOSYL)-ALPHA-BENZAMIDE FORMUL 6 15B 3(C23 H37 N5 O9) FORMUL 7 J15 2(C23 H37 N5 O9) FORMUL 11 HOH *650(H2 O) HELIX 1 1 ASN D 4 ALA D 10 1 7 HELIX 2 2 SER D 60 GLU D 79 1 20 HELIX 3 3 ASN E 4 ALA E 10 1 7 HELIX 4 4 SER E 60 GLU E 79 1 20 HELIX 5 5 ASN F 4 GLU F 11 1 8 HELIX 6 6 SER F 60 GLU F 79 1 20 HELIX 7 7 ASN G 4 ALA G 10 1 7 HELIX 8 8 SER G 60 GLU G 79 1 20 HELIX 9 9 ASN H 4 ALA H 10 1 7 HELIX 10 10 SER H 60 GLU H 79 1 20 SHEET 1 3040 SER D 26 SER D 30 0 SHEET 2 3040 MET D 37 THR D 41 -1 O MET D 37 N SER D 30 SHEET 3 3040 THR D 47 VAL D 50 -1 N PHE D 48 O ILE D 40 SHEET 4 3040 HIS D 94 ALA D 102 1 O HIS D 94 N GLN D 49 SHEET 5 3040 VAL D 82 TRP D 88 -1 N GLU D 83 O SER D 100 SHEET 6 3040 THR D 15 ASP D 22 -1 O GLN D 16 N VAL D 87 SHEET 7 3040 VAL D 82 TRP D 88 -1 N VAL D 82 O ASP D 22 SHEET 8 3040 HIS D 94 ALA D 102 -1 O ALA D 95 N TRP D 88 SHEET 9 3040 SER E 26 SER E 30 1 O TYR E 27 N MET D 101 SHEET 10 3040 ALA E 38 THR E 41 -1 N ILE E 39 O THR E 28 SHEET 11 3040 THR E 47 VAL E 50 -1 N PHE E 48 O ILE E 40 SHEET 12 3040 HIS E 94 ALA E 102 1 O HIS E 94 N GLN E 49 SHEET 13 3040 VAL E 82 TRP E 88 -1 N GLU E 83 O SER E 100 SHEET 14 3040 THR E 15 ASP E 22 -1 O GLN E 16 N VAL E 87 SHEET 15 3040 VAL E 82 TRP E 88 -1 N VAL E 82 O ASP E 22 SHEET 16 3040 HIS E 94 ALA E 102 -1 O ALA E 95 N TRP E 88 SHEET 17 3040 SER F 26 SER F 30 -1 O TYR F 27 N MET E 101 SHEET 18 3040 ALA F 38 THR F 41 -1 O ILE F 39 N THR F 28 SHEET 19 3040 THR F 47 VAL F 50 -1 N PHE F 48 O ILE F 40 SHEET 20 3040 HIS F 94 ALA F 102 1 O HIS F 94 N GLN F 49 SHEET 21 3040 VAL F 82 TRP F 88 -1 N GLU F 83 O SER F 100 SHEET 22 3040 THR F 15 ASP F 22 -1 O GLN F 16 N VAL F 87 SHEET 23 3040 VAL F 82 TRP F 88 -1 N VAL F 82 O ASP F 22 SHEET 24 3040 HIS F 94 ALA F 102 -1 O ALA F 95 N TRP F 88 SHEET 25 3040 SER G 26 SER G 30 -1 O TYR G 27 N MET F 101 SHEET 26 3040 MET G 37 THR G 41 -1 O MET G 37 N SER G 30 SHEET 27 3040 THR G 47 VAL G 50 -1 N PHE G 48 O ILE G 40 SHEET 28 3040 HIS G 94 ALA G 102 1 O HIS G 94 N GLN G 49 SHEET 29 3040 VAL G 82 TRP G 88 -1 N GLU G 83 O SER G 100 SHEET 30 3040 THR G 15 ASP G 22 -1 O GLN G 16 N VAL G 87 SHEET 31 3040 VAL G 82 TRP G 88 -1 N VAL G 82 O ASP G 22 SHEET 32 3040 HIS G 94 ALA G 102 -1 O ALA G 95 N TRP G 88 SHEET 33 3040 SER H 26 SER H 30 -1 O TYR H 27 N MET G 101 SHEET 34 3040 MET H 37 THR H 41 -1 O MET H 37 N SER H 30 SHEET 35 3040 THR H 47 VAL H 50 -1 O PHE H 48 N ILE H 40 SHEET 36 3040 HIS H 94 ALA H 102 1 O HIS H 94 N GLN H 49 SHEET 37 3040 VAL H 82 TRP H 88 -1 N GLU H 83 O SER H 100 SHEET 38 3040 THR H 15 ASP H 22 -1 O GLN H 16 N VAL H 87 SHEET 39 3040 VAL H 82 TRP H 88 -1 N VAL H 82 O ASP H 22 SHEET 40 3040 HIS H 94 ALA H 102 -1 O ALA H 95 N TRP H 88 SSBOND 1 CYS D 9 CYS D 86 1555 1555 2.05 SSBOND 2 CYS E 9 CYS E 86 1555 1555 2.03 SSBOND 3 CYS F 9 CYS F 86 1555 1555 2.04 SSBOND 4 CYS G 9 CYS G 86 1555 1555 2.04 SSBOND 5 CYS H 9 CYS H 86 1555 1555 2.04 CISPEP 1 THR D 92 PRO D 93 0 -11.45 CISPEP 2 THR E 92 PRO E 93 0 -11.57 CISPEP 3 THR F 92 PRO F 93 0 -10.29 CISPEP 4 THR G 92 PRO G 93 0 -8.92 CISPEP 5 THR H 92 PRO H 93 0 -13.55 SITE 1 AC1 17 GLU D 11 LYS D 34 GLU D 51 GLN D 56 SITE 2 AC1 17 HIS D 57 GLN D 61 TRP D 88 ASN D 90 SITE 3 AC1 17 LYS D 91 HOH D1513 HOH D1515 HOH D1516 SITE 4 AC1 17 HOH D1520 HOH D1521 HOH D1608 ILE H 58 SITE 5 AC1 17 HOH H1611 SITE 1 AC2 13 GLU E 11 TYR E 12 GLU E 51 GLN E 56 SITE 2 AC2 13 HIS E 57 GLN E 61 TRP E 88 ASN E 90 SITE 3 AC2 13 LYS E 91 HOH E1488 HOH E1517 HOH E1596 SITE 4 AC2 13 GLY F 33 SITE 1 AC3 13 GLU F 11 TYR F 12 GLU F 51 GLN F 56 SITE 2 AC3 13 HIS F 57 GLN F 61 TRP F 88 ASN F 90 SITE 3 AC3 13 LYS F 91 HOH F1491 HOH F1636 GLY G 33 SITE 4 AC3 13 ARG G 35 SITE 1 AC4 17 GLN D 16 GLU G 11 TYR G 12 GLU G 51 SITE 2 AC4 17 GLN G 56 HIS G 57 GLN G 61 TRP G 88 SITE 3 AC4 17 ASN G 90 LYS G 91 HOH G1492 HOH G1494 SITE 4 AC4 17 HOH G1509 HOH G1527 GLY H 33 ARG H 35 SITE 5 AC4 17 HOH H1338 SITE 1 AC5 18 GLY D 33 LYS D 34 ARG D 35 GLN E 16 SITE 2 AC5 18 HOH E1093 GLU H 11 TYR H 12 GLU H 51 SITE 3 AC5 18 GLN H 56 HIS H 57 GLN H 61 TRP H 88 SITE 4 AC5 18 ASN H 90 LYS H 91 HOH H1382 HOH H1483 SITE 5 AC5 18 HOH H1512 HOH H1650 CRYST1 101.754 65.998 77.362 90.00 105.44 90.00 C 1 2 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009828 0.000000 0.002714 0.00000 SCALE2 0.000000 0.015152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013410 0.00000