HEADER TOXIN 11-JUL-03 1PZJ
TITLE CHOLERA TOXIN B-PENTAMER COMPLEXED WITH NITROPHENYL GALACTOSIDE 5
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CHOLERA TOXIN B SUBUNIT;
COMPND 3 CHAIN: D, E, F, G, H;
COMPND 4 SYNONYM: CTB; CHOLERA TOXIN B PROTEIN; CHOLERA TOXIN SUBUNIT B;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE;
SOURCE 3 ORGANISM_TAXID: 666;
SOURCE 4 GENE: CAA41591;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TOP10;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD
KEYWDS PENTAMER, MONOVALENT, TOXIN, INHIBITOR, CHOLERA
EXPDTA X-RAY DIFFRACTION
AUTHOR D.D.MITCHELL,J.C.PICKENS,K.KOROTKOV,E.FAN,W.G.J.HOL
REVDAT 5 06-NOV-24 1PZJ 1 REMARK
REVDAT 4 16-AUG-23 1PZJ 1 REMARK
REVDAT 3 24-JUL-19 1PZJ 1 REMARK
REVDAT 2 24-FEB-09 1PZJ 1 VERSN
REVDAT 1 09-MAR-04 1PZJ 0
JRNL AUTH D.D.MITCHELL,J.C.PICKENS,K.KOROTKOV,E.FAN,W.G.J.HOL
JRNL TITL 3,5-SUBSTITUTED PHENYL GALACTOSIDES AS LEADS IN DESIGNING
JRNL TITL 2 EFFECTIVE CHOLERA TOXIN ANTAGONISTS; SYNTHESIS AND
JRNL TITL 3 CRYSTALLOGRAPHIC STUDIES
JRNL REF BIOORG.MED.CHEM. V. 12 907 2004
JRNL REFN ISSN 0968-0896
JRNL PMID 14980603
JRNL DOI 10.1016/J.BMC.2003.12.019
REMARK 2
REMARK 2 RESOLUTION. 1.46 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.1.24
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : ENGH & HUBER
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.69
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9
REMARK 3 NUMBER OF REFLECTIONS : 80755
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.117
REMARK 3 R VALUE (WORKING SET) : 0.115
REMARK 3 FREE R VALUE : 0.159
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 4274
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.46
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50
REMARK 3 REFLECTION IN BIN (WORKING SET) : 5733
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : 0.1010
REMARK 3 BIN FREE R VALUE SET COUNT : 317
REMARK 3 BIN FREE R VALUE : 0.1730
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4070
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 185
REMARK 3 SOLVENT ATOMS : 650
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 13.82
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.47
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.02000
REMARK 3 B22 (A**2) : -0.01000
REMARK 3 B33 (A**2) : 0.05000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.02000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.063
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.793
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4380 ; 0.011 ; 0.021
REMARK 3 BOND LENGTHS OTHERS (A): 3870 ; 0.005 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5930 ; 1.485 ; 1.987
REMARK 3 BOND ANGLES OTHERS (DEGREES): 9116 ; 1.111 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 6.914 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 680 ; 0.095 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4616 ; 0.011 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 768 ; 0.018 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 846 ; 0.228 ; 0.300
REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4630 ; 0.280 ; 0.300
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): 2331 ; 0.099 ; 0.500
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 816 ; 0.174 ; 0.500
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.190 ; 0.300
REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.262 ; 0.300
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 37 ; 0.190 ; 0.500
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2577 ; 2.299 ; 3.000
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4190 ; 3.207 ; 4.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1793 ; 4.971 ; 6.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1715 ; 6.726 ; 8.000
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4370 ; 2.462 ; 4.000
REMARK 3 SPHERICITY; FREE ATOMS (A**2): 650 ;21.284 ;20.000
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4280 ; 6.274 ;20.000
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : BABINET MODEL WITH MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.40
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 1PZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-03.
REMARK 100 THE DEPOSITION ID IS D_1000019727.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 18-MAR-02
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 8.2.2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800
REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : TRUNCATE, HKL-2000
REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE)
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85036
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460
REMARK 200 RESOLUTION RANGE LOW (A) : 99.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5
REMARK 200 DATA REDUNDANCY : 3.180
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.04800
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.7400
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51
REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2
REMARK 200 DATA REDUNDANCY IN SHELL : 2.46
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : 0.11500
REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.601
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: XTALVIEW
REMARK 200 STARTING MODEL: 3CHB
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 31.70
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 42% PEG 350, 50 MM NACL, 100 MM TRIS
REMARK 280 -HCL PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.87700
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.99900
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.87700
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.99900
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 14420 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 22300 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F, G, H
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH F1586 LIES ON A SPECIAL POSITION.
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH H 1265 O HOH H 1462 2.02
REMARK 500 O HOH G 1158 O HOH G 1482 2.04
REMARK 500 CD1 ILE F 17 O HOH F 1107 2.07
REMARK 500 O HOH H 1437 O HOH H 1496 2.07
REMARK 500 OG1 THR H 1 O HOH H 1428 2.10
REMARK 500 O HOH G 1158 O HOH G 1464 2.14
REMARK 500 O HOH F 1060 O HOH F 1262 2.15
REMARK 500 O HOH E 1178 O HOH E 1455 2.17
REMARK 500 O HOH F 1271 O HOH F 1413 2.18
REMARK 500 NE2 GLN G 3 O HOH G 1625 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ASP F 59 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLU D 83 -70.61 -77.94
REMARK 500 ASN F 21 53.22 39.22
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15B D 104
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE J15 E 105
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE J15 F 106
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15B G 107
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15B H 108
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1PZI RELATED DB: PDB
REMARK 900 RELATED ID: 1PZK RELATED DB: PDB
DBREF 1PZJ D 1 103 UNP Q57193 Q57193_VIBCH 22 124
DBREF 1PZJ E 1 103 UNP Q57193 Q57193_VIBCH 22 124
DBREF 1PZJ F 1 103 UNP Q57193 Q57193_VIBCH 22 124
DBREF 1PZJ G 1 103 UNP Q57193 Q57193_VIBCH 22 124
DBREF 1PZJ H 1 103 UNP Q57193 Q57193_VIBCH 22 124
SEQRES 1 D 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS
SEQRES 2 D 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER
SEQRES 3 D 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE
SEQRES 4 D 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL
SEQRES 5 D 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE
SEQRES 6 D 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR
SEQRES 7 D 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS
SEQRES 8 D 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN
SEQRES 1 E 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS
SEQRES 2 E 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER
SEQRES 3 E 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE
SEQRES 4 E 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL
SEQRES 5 E 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE
SEQRES 6 E 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR
SEQRES 7 E 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS
SEQRES 8 E 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN
SEQRES 1 F 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS
SEQRES 2 F 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER
SEQRES 3 F 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE
SEQRES 4 F 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL
SEQRES 5 F 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE
SEQRES 6 F 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR
SEQRES 7 F 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS
SEQRES 8 F 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN
SEQRES 1 G 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS
SEQRES 2 G 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER
SEQRES 3 G 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE
SEQRES 4 G 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL
SEQRES 5 G 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE
SEQRES 6 G 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR
SEQRES 7 G 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS
SEQRES 8 G 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN
SEQRES 1 H 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS
SEQRES 2 H 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER
SEQRES 3 H 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE
SEQRES 4 H 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL
SEQRES 5 H 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE
SEQRES 6 H 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR
SEQRES 7 H 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS
SEQRES 8 H 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN
HET 15B D 104 37
HET J15 E 105 37
HET J15 F 106 37
HET 15B G 107 37
HET 15B H 108 37
HETNAM 15B N-{3-[4-(3-AMINO-PROPYL)-PIPERAZIN-1-YL]-PROPYL}-3-
HETNAM 2 15B NITRO-5-(GALACTOPYRANOSYL)-BETA-BENZAMIDE
HETNAM J15 N-{3-[4-(3-AMINO-PROPYL)-PIPERAZIN-1-YL]-PROPYL}-3-
HETNAM 2 J15 NITRO-5-(GALACTOPYRANOSYL)-ALPHA-BENZAMIDE
FORMUL 6 15B 3(C23 H37 N5 O9)
FORMUL 7 J15 2(C23 H37 N5 O9)
FORMUL 11 HOH *650(H2 O)
HELIX 1 1 ASN D 4 ALA D 10 1 7
HELIX 2 2 SER D 60 GLU D 79 1 20
HELIX 3 3 ASN E 4 ALA E 10 1 7
HELIX 4 4 SER E 60 GLU E 79 1 20
HELIX 5 5 ASN F 4 GLU F 11 1 8
HELIX 6 6 SER F 60 GLU F 79 1 20
HELIX 7 7 ASN G 4 ALA G 10 1 7
HELIX 8 8 SER G 60 GLU G 79 1 20
HELIX 9 9 ASN H 4 ALA H 10 1 7
HELIX 10 10 SER H 60 GLU H 79 1 20
SHEET 1 3040 SER D 26 SER D 30 0
SHEET 2 3040 MET D 37 THR D 41 -1 O MET D 37 N SER D 30
SHEET 3 3040 THR D 47 VAL D 50 -1 N PHE D 48 O ILE D 40
SHEET 4 3040 HIS D 94 ALA D 102 1 O HIS D 94 N GLN D 49
SHEET 5 3040 VAL D 82 TRP D 88 -1 N GLU D 83 O SER D 100
SHEET 6 3040 THR D 15 ASP D 22 -1 O GLN D 16 N VAL D 87
SHEET 7 3040 VAL D 82 TRP D 88 -1 N VAL D 82 O ASP D 22
SHEET 8 3040 HIS D 94 ALA D 102 -1 O ALA D 95 N TRP D 88
SHEET 9 3040 SER E 26 SER E 30 1 O TYR E 27 N MET D 101
SHEET 10 3040 ALA E 38 THR E 41 -1 N ILE E 39 O THR E 28
SHEET 11 3040 THR E 47 VAL E 50 -1 N PHE E 48 O ILE E 40
SHEET 12 3040 HIS E 94 ALA E 102 1 O HIS E 94 N GLN E 49
SHEET 13 3040 VAL E 82 TRP E 88 -1 N GLU E 83 O SER E 100
SHEET 14 3040 THR E 15 ASP E 22 -1 O GLN E 16 N VAL E 87
SHEET 15 3040 VAL E 82 TRP E 88 -1 N VAL E 82 O ASP E 22
SHEET 16 3040 HIS E 94 ALA E 102 -1 O ALA E 95 N TRP E 88
SHEET 17 3040 SER F 26 SER F 30 -1 O TYR F 27 N MET E 101
SHEET 18 3040 ALA F 38 THR F 41 -1 O ILE F 39 N THR F 28
SHEET 19 3040 THR F 47 VAL F 50 -1 N PHE F 48 O ILE F 40
SHEET 20 3040 HIS F 94 ALA F 102 1 O HIS F 94 N GLN F 49
SHEET 21 3040 VAL F 82 TRP F 88 -1 N GLU F 83 O SER F 100
SHEET 22 3040 THR F 15 ASP F 22 -1 O GLN F 16 N VAL F 87
SHEET 23 3040 VAL F 82 TRP F 88 -1 N VAL F 82 O ASP F 22
SHEET 24 3040 HIS F 94 ALA F 102 -1 O ALA F 95 N TRP F 88
SHEET 25 3040 SER G 26 SER G 30 -1 O TYR G 27 N MET F 101
SHEET 26 3040 MET G 37 THR G 41 -1 O MET G 37 N SER G 30
SHEET 27 3040 THR G 47 VAL G 50 -1 N PHE G 48 O ILE G 40
SHEET 28 3040 HIS G 94 ALA G 102 1 O HIS G 94 N GLN G 49
SHEET 29 3040 VAL G 82 TRP G 88 -1 N GLU G 83 O SER G 100
SHEET 30 3040 THR G 15 ASP G 22 -1 O GLN G 16 N VAL G 87
SHEET 31 3040 VAL G 82 TRP G 88 -1 N VAL G 82 O ASP G 22
SHEET 32 3040 HIS G 94 ALA G 102 -1 O ALA G 95 N TRP G 88
SHEET 33 3040 SER H 26 SER H 30 -1 O TYR H 27 N MET G 101
SHEET 34 3040 MET H 37 THR H 41 -1 O MET H 37 N SER H 30
SHEET 35 3040 THR H 47 VAL H 50 -1 O PHE H 48 N ILE H 40
SHEET 36 3040 HIS H 94 ALA H 102 1 O HIS H 94 N GLN H 49
SHEET 37 3040 VAL H 82 TRP H 88 -1 N GLU H 83 O SER H 100
SHEET 38 3040 THR H 15 ASP H 22 -1 O GLN H 16 N VAL H 87
SHEET 39 3040 VAL H 82 TRP H 88 -1 N VAL H 82 O ASP H 22
SHEET 40 3040 HIS H 94 ALA H 102 -1 O ALA H 95 N TRP H 88
SSBOND 1 CYS D 9 CYS D 86 1555 1555 2.05
SSBOND 2 CYS E 9 CYS E 86 1555 1555 2.03
SSBOND 3 CYS F 9 CYS F 86 1555 1555 2.04
SSBOND 4 CYS G 9 CYS G 86 1555 1555 2.04
SSBOND 5 CYS H 9 CYS H 86 1555 1555 2.04
CISPEP 1 THR D 92 PRO D 93 0 -11.45
CISPEP 2 THR E 92 PRO E 93 0 -11.57
CISPEP 3 THR F 92 PRO F 93 0 -10.29
CISPEP 4 THR G 92 PRO G 93 0 -8.92
CISPEP 5 THR H 92 PRO H 93 0 -13.55
SITE 1 AC1 17 GLU D 11 LYS D 34 GLU D 51 GLN D 56
SITE 2 AC1 17 HIS D 57 GLN D 61 TRP D 88 ASN D 90
SITE 3 AC1 17 LYS D 91 HOH D1513 HOH D1515 HOH D1516
SITE 4 AC1 17 HOH D1520 HOH D1521 HOH D1608 ILE H 58
SITE 5 AC1 17 HOH H1611
SITE 1 AC2 13 GLU E 11 TYR E 12 GLU E 51 GLN E 56
SITE 2 AC2 13 HIS E 57 GLN E 61 TRP E 88 ASN E 90
SITE 3 AC2 13 LYS E 91 HOH E1488 HOH E1517 HOH E1596
SITE 4 AC2 13 GLY F 33
SITE 1 AC3 13 GLU F 11 TYR F 12 GLU F 51 GLN F 56
SITE 2 AC3 13 HIS F 57 GLN F 61 TRP F 88 ASN F 90
SITE 3 AC3 13 LYS F 91 HOH F1491 HOH F1636 GLY G 33
SITE 4 AC3 13 ARG G 35
SITE 1 AC4 17 GLN D 16 GLU G 11 TYR G 12 GLU G 51
SITE 2 AC4 17 GLN G 56 HIS G 57 GLN G 61 TRP G 88
SITE 3 AC4 17 ASN G 90 LYS G 91 HOH G1492 HOH G1494
SITE 4 AC4 17 HOH G1509 HOH G1527 GLY H 33 ARG H 35
SITE 5 AC4 17 HOH H1338
SITE 1 AC5 18 GLY D 33 LYS D 34 ARG D 35 GLN E 16
SITE 2 AC5 18 HOH E1093 GLU H 11 TYR H 12 GLU H 51
SITE 3 AC5 18 GLN H 56 HIS H 57 GLN H 61 TRP H 88
SITE 4 AC5 18 ASN H 90 LYS H 91 HOH H1382 HOH H1483
SITE 5 AC5 18 HOH H1512 HOH H1650
CRYST1 101.754 65.998 77.362 90.00 105.44 90.00 C 1 2 1 20
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009828 0.000000 0.002714 0.00000
SCALE2 0.000000 0.015152 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013410 0.00000