HEADER HYDROLASE 23-JUL-03 1Q27 TITLE NMR SOLUTION STRUCTURE OF DR0079: AN HYPOTHETICAL NUDIX PROTEIN FROM TITLE 2 D. RADIODURANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE NUDIX HYDROLASE DR0079; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MUTT/NUDIX FAMILY PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 GENE: DR0079; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30B KEYWDS NUDIX HYDROLASE, RADIATION RESISTANCE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR G.W.BUCHKO,S.NI,S.R.HOLBROOK,M.A.KENNEDY REVDAT 6 22-MAY-24 1Q27 1 REMARK REVDAT 5 02-MAR-22 1Q27 1 REMARK REVDAT 4 24-FEB-09 1Q27 1 VERSN REVDAT 3 15-JUN-04 1Q27 1 JRNL REVDAT 2 08-JUN-04 1Q27 1 JRNL REVDAT 1 12-AUG-03 1Q27 0 JRNL AUTH G.W.BUCHKO,S.NI,S.R.HOLBROOK,M.A.KENNEDY JRNL TITL SOLUTION STRUCTURE OF HYPOTHETICAL NUDIX HYDROLASE DR0079 JRNL TITL 2 FROM EXTREMELY RADIATION-RESISTANT DEINOCOCCUS RADIODURANS JRNL TITL 3 BACTERIUM JRNL REF PROTEINS V. 56 28 2004 JRNL REFN ISSN 0887-3585 JRNL PMID 15162484 JRNL DOI 10.1002/PROT.20082 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.W.BUCHKO,S.NI,S.A.HOLBROOK,M.A.KENNEDY REMARK 1 TITL 1H, 13C AND 15N NMR ASSIGNMENTS OF THE HYPOTHETICAL NUDIX REMARK 1 TITL 2 PROTEIN DR0079 FROM THE EXTREMELY RADIATION-RESISTANT REMARK 1 TITL 3 BACTERIUM DEINOCOCCUS RADIODURANS REMARK 1 REF J.BIOMOL.NMR V. 25 169 2003 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1022243724501 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, CNS 1.1 REMARK 3 AUTHORS : GUENTERT (DYANA), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DYANA USED FOR INITIAL REFINEMENTS. REMARK 3 CNS USED FOR FINAL STRUCTURE CALCULATIONS WITH RDCS. REMARK 4 REMARK 4 1Q27 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000019822. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 7.1; 7.1 REMARK 210 IONIC STRENGTH : 100 MM KCL; 20 MM POTASSIUM REMARK 210 PHOSPHATE; 100 MM KCL; 20 MM REMARK 210 POTASSIUM PHOSPHATE REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : ~2 MM DR0079; U-15N, 13C; 100 MM REMARK 210 KCL, 20 MM POTASSIUM PHOSPHATE, REMARK 210 2 MM DTT, PH 7.1; ~2 MM DR0079; REMARK 210 U-15N, 13C; 100 MM KCL, 20 MM REMARK 210 POTASSIUM PHOSPHATE, 2 MM DTT, REMARK 210 PH 7.1, PF1 FILAMENTOUS PHAGE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 4D_13C- REMARK 210 SEPARATED_NOESY; IPAP-HSQC REMARK 210 EXPERIEMENTS FOR RDCS REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1, FELIX 97 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 225 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TEN BEST STRUCTURES, IN TERMS OF REMARK 210 TOTAL AND NOE ENERGIES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 6 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 4 174.20 -51.26 REMARK 500 1 SER A 5 -174.77 -177.75 REMARK 500 1 GLU A 7 123.42 62.95 REMARK 500 1 GLU A 14 -43.67 -162.54 REMARK 500 1 ARG A 15 -77.22 -88.31 REMARK 500 1 ASP A 16 33.35 -158.71 REMARK 500 1 GLU A 32 -46.44 -167.81 REMARK 500 1 SER A 44 18.13 58.00 REMARK 500 1 PHE A 60 113.25 -167.09 REMARK 500 1 VAL A 66 -172.33 -58.39 REMARK 500 1 SER A 74 -66.94 69.66 REMARK 500 1 GLU A 76 -37.29 -178.74 REMARK 500 1 LEU A 90 22.35 -151.79 REMARK 500 1 ILE A 94 27.97 42.65 REMARK 500 1 ASP A 95 20.86 -144.47 REMARK 500 1 LEU A 97 -87.47 -99.53 REMARK 500 1 SER A 98 125.31 171.85 REMARK 500 1 ALA A 103 -164.46 173.98 REMARK 500 1 SER A 106 -56.84 178.11 REMARK 500 1 PRO A 107 -72.33 -29.30 REMARK 500 1 PHE A 108 -38.32 -178.66 REMARK 500 1 THR A 111 99.32 63.89 REMARK 500 1 PRO A 127 -168.54 -76.30 REMARK 500 1 PHE A 129 98.00 -55.88 REMARK 500 1 ASN A 130 74.80 -158.43 REMARK 500 1 ILE A 134 99.76 -175.92 REMARK 500 1 LYS A 156 -158.16 -101.78 REMARK 500 1 ARG A 168 -70.65 -62.31 REMARK 500 1 GLU A 170 51.61 -116.86 REMARK 500 2 ASP A 6 88.18 60.73 REMARK 500 2 GLU A 14 -51.78 -127.68 REMARK 500 2 ARG A 15 -70.70 177.31 REMARK 500 2 THR A 25 44.24 -90.86 REMARK 500 2 PRO A 27 42.10 -84.76 REMARK 500 2 ARG A 30 97.78 54.55 REMARK 500 2 ARG A 33 30.29 -174.78 REMARK 500 2 SER A 54 138.82 -172.33 REMARK 500 2 SER A 56 -55.70 77.51 REMARK 500 2 LYS A 57 125.26 63.42 REMARK 500 2 ASN A 62 -65.18 66.78 REMARK 500 2 ALA A 63 156.24 75.48 REMARK 500 2 LEU A 64 177.86 -58.22 REMARK 500 2 GLU A 89 -75.09 -74.03 REMARK 500 2 ILE A 94 28.03 43.70 REMARK 500 2 SER A 98 105.91 65.58 REMARK 500 2 ARG A 100 99.55 -162.80 REMARK 500 2 ALA A 103 -168.96 166.73 REMARK 500 2 PRO A 107 100.59 -56.67 REMARK 500 2 PHE A 108 -43.47 -177.93 REMARK 500 2 GLN A 109 64.01 -166.59 REMARK 500 REMARK 500 THIS ENTRY HAS 310 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1Q27 A 1 171 UNP Q9RY71 Y079_DEIRA 1 171 SEQRES 1 A 171 MET GLY GLY VAL SER ASP GLU ARG LEU ASP LEU VAL ASN SEQRES 2 A 171 GLU ARG ASP GLU VAL VAL GLY GLN ILE LEU ARG THR ASP SEQRES 3 A 171 PRO ALA LEU ARG TRP GLU ARG VAL ARG VAL VAL ASN ALA SEQRES 4 A 171 PHE LEU ARG ASN SER GLN GLY GLN LEU TRP ILE PRO ARG SEQRES 5 A 171 ARG SER PRO SER LYS SER LEU PHE PRO ASN ALA LEU ASP SEQRES 6 A 171 VAL SER VAL GLY GLY ALA VAL GLN SER GLY GLU THR TYR SEQRES 7 A 171 GLU GLU ALA PHE ARG ARG GLU ALA ARG GLU GLU LEU ASN SEQRES 8 A 171 VAL GLU ILE ASP ALA LEU SER TRP ARG PRO LEU ALA SER SEQRES 9 A 171 PHE SER PRO PHE GLN THR THR LEU SER SER PHE MET CYS SEQRES 10 A 171 VAL TYR GLU LEU ARG SER ASP ALA THR PRO ILE PHE ASN SEQRES 11 A 171 PRO ASN ASP ILE SER GLY GLY GLU TRP LEU THR PRO GLU SEQRES 12 A 171 HIS LEU LEU ALA ARG ILE ALA ALA GLY GLU ALA ALA LYS SEQRES 13 A 171 GLY ASP LEU ALA GLU LEU VAL ARG ARG CYS TYR ARG GLU SEQRES 14 A 171 GLU GLU HELIX 1 1 THR A 77 ASN A 91 1 15 HELIX 2 2 THR A 141 GLU A 153 1 13 HELIX 3 3 LYS A 156 ARG A 168 1 13 SHEET 1 A 2 ARG A 8 VAL A 12 0 SHEET 2 A 2 VAL A 18 LEU A 23 -1 O GLY A 20 N LEU A 11 SHEET 1 B 4 VAL A 68 ALA A 71 0 SHEET 2 B 4 ARG A 35 ASN A 43 -1 N VAL A 37 O GLY A 70 SHEET 3 B 4 PHE A 115 ARG A 122 1 O TYR A 119 N PHE A 40 SHEET 4 B 4 TRP A 99 PHE A 105 -1 N ARG A 100 O GLU A 120 SHEET 1 C 4 VAL A 68 ALA A 71 0 SHEET 2 C 4 ARG A 35 ASN A 43 -1 N VAL A 37 O GLY A 70 SHEET 3 C 4 GLN A 47 ILE A 50 -1 O GLN A 47 N ASN A 43 SHEET 4 C 4 GLU A 138 LEU A 140 -1 O GLU A 138 N ILE A 50 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1