HEADER ANTITUMOR PROTEIN 24-JUL-03 1Q2F TITLE NMR SOLUTION STRUCTURE OF A PEPTIDE FROM THE MDM-2 BINDING DOMAIN OF TITLE 2 THE P53 PROTEIN THAT IS SELECTIVELY CYTOTOXIC TO CANCER CELLS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PNC27; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: P53 MDM-2 BINDING PEPTIDE, ANTENNAPEDIA HOMEODOMAIN COMPND 5 PEPTIDE; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: P53 MDM-2 BINDING DOMAIN FRAGMENT LINKED TO PENETRATIN COMPND 8 FRAGMENT SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHESIZED KEYWDS P53 PROTEIN, MDM-2 BINDING DOMAIN, PENETRATIN, ANTITUMOR, ANTITUMOR KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR R.ROSAL,M.R.PINCUS,P.W.BRANDT-RAUF,R.L.FINE,H.WANG REVDAT 3 02-MAR-22 1Q2F 1 REMARK REVDAT 2 24-FEB-09 1Q2F 1 VERSN REVDAT 1 16-MAR-04 1Q2F 0 JRNL AUTH R.ROSAL,M.R.PINCUS,P.W.BRANDT-RAUF,R.L.FINE,J.MICHL,H.WANG JRNL TITL NMR SOLUTION STRUCTURE OF A PEPTIDE FROM THE MDM-2 BINDING JRNL TITL 2 DOMAIN OF THE P53 PROTEIN THAT IS SELECTIVELY CYTOTOXIC TO JRNL TITL 3 CANCER CELLS JRNL REF BIOCHEMISTRY V. 43 1854 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 14967026 JRNL DOI 10.1021/BI035718G REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2001, DYANA 1.5 REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), GUENTERT (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q2F COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000019830. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : N. A. REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1; 3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY; REMARK 210 13C-HSQC; 13C-HSQCTOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.0.4, DYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY,TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE ASSIGNMNENTS WERE DETERMINED USING 2D HOMONUCLEAR REMARK 210 TECHNIQUES AND CONFIRMED BY C13 HETERONUCLEAR METHODS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLN A 24 HD1 TRP A 26 1.32 REMARK 500 O GLN A 24 H VAL A 27 1.55 REMARK 500 O THR A 7 N SER A 9 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 2 -162.21 -72.43 REMARK 500 1 SER A 4 113.81 58.53 REMARK 500 1 GLN A 5 -37.51 88.06 REMARK 500 1 THR A 7 -94.77 -93.63 REMARK 500 1 PHE A 8 -64.20 10.12 REMARK 500 1 LYS A 17 -36.42 -165.06 REMARK 500 1 ARG A 22 15.90 -64.35 REMARK 500 1 ASN A 23 14.45 -144.83 REMARK 500 1 GLN A 24 -99.22 -169.32 REMARK 500 1 PHE A 25 -38.86 -34.92 REMARK 500 1 VAL A 29 -16.69 -46.14 REMARK 500 1 ARG A 31 88.61 28.80 REMARK 500 2 LEU A 3 0.37 85.96 REMARK 500 2 SER A 4 137.43 76.51 REMARK 500 2 GLN A 5 -36.69 89.18 REMARK 500 2 THR A 7 -94.71 -93.97 REMARK 500 2 PHE A 8 -64.15 10.15 REMARK 500 2 LEU A 11 -70.58 -66.69 REMARK 500 2 LYS A 17 -37.14 -165.10 REMARK 500 2 ARG A 22 17.53 -65.63 REMARK 500 2 ASN A 23 13.32 -144.15 REMARK 500 2 GLN A 24 -98.62 -170.70 REMARK 500 2 PHE A 25 -39.79 -33.85 REMARK 500 2 VAL A 29 -16.67 -46.25 REMARK 500 2 ARG A 31 -95.99 28.82 REMARK 500 3 PRO A 2 -162.06 -72.41 REMARK 500 3 SER A 4 122.29 64.64 REMARK 500 3 GLN A 5 -49.06 78.19 REMARK 500 3 THR A 7 -96.25 -95.52 REMARK 500 3 PHE A 8 -64.34 9.29 REMARK 500 3 LYS A 17 -23.16 -165.59 REMARK 500 3 ARG A 22 19.89 -65.72 REMARK 500 3 ASN A 23 16.07 -147.85 REMARK 500 3 GLN A 24 -101.45 -166.35 REMARK 500 3 VAL A 29 -16.39 -46.49 REMARK 500 3 ARG A 31 80.43 28.54 REMARK 500 4 PRO A 2 -163.94 -72.39 REMARK 500 4 SER A 4 119.79 171.93 REMARK 500 4 GLN A 5 -52.62 172.70 REMARK 500 4 THR A 7 -92.32 -86.14 REMARK 500 4 PHE A 8 -63.60 8.24 REMARK 500 4 LYS A 16 12.76 -69.39 REMARK 500 4 LYS A 17 -22.36 -164.64 REMARK 500 4 ARG A 22 17.84 -65.22 REMARK 500 4 ASN A 23 16.24 -146.76 REMARK 500 4 GLN A 24 -102.02 -164.83 REMARK 500 4 ARG A 31 -58.96 -23.58 REMARK 500 5 LEU A 3 4.35 80.72 REMARK 500 5 SER A 4 -146.48 -142.71 REMARK 500 5 GLN A 5 -43.00 170.42 REMARK 500 REMARK 500 THIS ENTRY HAS 373 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SUITABLE DATABASE REFERENCE SEQUENCE COULD NOT REMARK 999 BE FOUND BY BLAST ALIGNMENT FOR THIS PROTEIN AT REMARK 999 THE TIME OF PROCESSING. DBREF 1Q2F A 1 32 PDB 1Q2F 1Q2F 1 32 SEQRES 1 A 32 PRO PRO LEU SER GLN GLU THR PHE SER ASP LEU TRP LYS SEQRES 2 A 32 LEU LEU LYS LYS TRP LYS MET ARG ARG ASN GLN PHE TRP SEQRES 3 A 32 VAL LYS VAL GLN ARG GLY HELIX 1 1 ASP A 10 LEU A 15 1 6 HELIX 2 2 TRP A 18 ASN A 23 1 6 HELIX 3 3 GLN A 24 ARG A 31 1 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1