HEADER ISOMERASE 05-AUG-03 1Q50 TITLE PHOSPHOGLUCOSE ISOMERASE FROM LEISHMANIA MEXICANA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GPI, PHOSPHOGLUCOSE ISOMERASE, PGI, PHOSPHOHEXOSE ISOMERASE, COMPND 5 PHI; COMPND 6 EC: 5.3.1.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA; SOURCE 3 ORGANISM_TAXID: 5665; SOURCE 4 GENE: PGI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.T.CORDEIRO,P.A.M.MICHELS,L.F.DELBONI,O.H.THIEMANN REVDAT 6 14-FEB-24 1Q50 1 REMARK REVDAT 5 24-JUL-19 1Q50 1 REMARK REVDAT 4 11-OCT-17 1Q50 1 REMARK REVDAT 3 13-JUL-11 1Q50 1 VERSN REVDAT 2 24-FEB-09 1Q50 1 VERSN REVDAT 1 29-JUN-04 1Q50 0 JRNL AUTH A.T.CORDEIRO,P.A.M.MICHELS,L.F.DELBONI,O.H.THIEMANN JRNL TITL THE CRYSTAL STRUCTURE OF GLUCOSE-6-PHOSPHATE ISOMERASE FROM JRNL TITL 2 LEISHMANIA MEXICANA REVEALS NOVEL ACTIVE SITE FEATURES JRNL REF EUR.J.BIOCHEM. V. 271 2765 2004 JRNL REFN ISSN 0014-2956 JRNL PMID 15206941 JRNL DOI 10.1111/J.1432-1033.2004.04205.X REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.09 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 23091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1181 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1643 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4387 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.72000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -1.08000 REMARK 3 B12 (A**2) : 0.36000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.505 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.295 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.206 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4444 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3891 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6029 ; 1.832 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9011 ; 1.017 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 560 ; 5.976 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;37.003 ;24.554 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 725 ;16.205 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.753 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 673 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5043 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 919 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1084 ; 0.234 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4463 ; 0.260 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2383 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 188 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.116 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 119 ; 0.212 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.141 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2772 ; 0.923 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4459 ; 1.708 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1672 ; 2.315 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1570 ; 3.875 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 605 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0200 23.3880 148.1480 REMARK 3 T TENSOR REMARK 3 T11: 0.1630 T22: 0.1889 REMARK 3 T33: 0.0197 T12: -0.1010 REMARK 3 T13: 0.0384 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.5765 L22: 1.1756 REMARK 3 L33: 1.2765 L12: 0.0243 REMARK 3 L13: -0.0851 L23: 0.3268 REMARK 3 S TENSOR REMARK 3 S11: -0.0358 S12: 0.0307 S13: 0.0777 REMARK 3 S21: 0.0617 S22: 0.0751 S23: 0.1027 REMARK 3 S31: 0.0504 S32: 0.0567 S33: -0.0393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Q50 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000019923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24333 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6K, PH 9.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.80967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 233.61933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 175.21450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 292.02417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.40483 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 116.80967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 233.61933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 292.02417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 175.21450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 58.40483 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HOMODIMER IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 10240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 42.87200 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 74.25648 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 292.02417 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 573 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 142 O HOH A 681 2.16 REMARK 500 OE2 GLU A 434 O HOH A 696 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ARG A 306 CD1 ILE A 584 9655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 90 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 164 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 235 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP A 311 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 311 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 VAL A 328 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 ASP A 356 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 394 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 522 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 522 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 535 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 48 -10.26 70.67 REMARK 500 SER A 93 132.35 -172.60 REMARK 500 SER A 232 -34.71 -142.09 REMARK 500 THR A 262 108.46 -39.94 REMARK 500 SER A 286 133.05 -38.41 REMARK 500 LYS A 419 -10.61 -43.41 REMARK 500 THR A 427 -142.16 -108.90 REMARK 500 GLN A 440 45.14 37.76 REMARK 500 HIS A 441 -40.46 -168.19 REMARK 500 ALA A 442 -73.19 -25.35 REMARK 500 GLN A 465 26.57 -68.57 REMARK 500 ASN A 466 129.08 177.97 REMARK 500 ARG A 467 31.14 -90.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q1I RELATED DB: PDB REMARK 900 PGI FROM L. MEXICANA COMPLEXED WITH F6P REMARK 900 RELATED ID: 1JLH RELATED DB: PDB REMARK 900 HUMAN PGI DBREF 1Q50 A 44 604 UNP P42861 G6PI_LEIME 44 604 SEQRES 1 A 561 GLY VAL THR ASP SER SER LEU LEU ASN LEU PRO ALA TRP SEQRES 2 A 561 LYS ARG LEU GLN SER LEU TYR GLU LYS TYR GLY ASN ASP SEQRES 3 A 561 SER ILE LEU SER HIS PHE GLU LYS ASP HIS GLN ARG PHE SEQRES 4 A 561 GLN ARG TYR SER ILE GLU ILE ASP LEU HIS SER ASP ASP SEQRES 5 A 561 ASN PHE LEU PHE LEU ASP TYR SER LYS SER HIS ILE ASN SEQRES 6 A 561 ASP GLU ILE LYS ASP ALA LEU VAL ALA LEU ALA GLU GLU SEQRES 7 A 561 ARG GLY VAL ARG ALA PHE ALA LYS ALA MET PHE ASP GLY SEQRES 8 A 561 GLN ARG VAL ASN SER THR GLU ASN ARG ALA VAL LEU HIS SEQRES 9 A 561 VAL ALA LEU ARG ASN ARG SER ASN ARG PRO ILE ILE VAL SEQRES 10 A 561 ASP GLY LYS ASP VAL MET SER ASP VAL ASN ASN VAL LEU SEQRES 11 A 561 ALA GLN MET LYS ASP PHE THR GLU ARG VAL ARG SER GLY SEQRES 12 A 561 GLU TRP LYS GLY GLN THR GLY LYS SER ILE TYR ASN ILE SEQRES 13 A 561 VAL ASN ILE GLY ILE GLY GLY SER ASP LEU GLY PRO VAL SEQRES 14 A 561 MET VAL THR GLU ALA LEU LYS PRO PHE SER LYS ARG ASP SEQRES 15 A 561 LEU HIS CYS PHE PHE VAL SER ASN VAL ASP GLY THR HIS SEQRES 16 A 561 MET ALA GLU VAL LEU LYS GLN VAL ASN LEU GLU GLU THR SEQRES 17 A 561 ILE PHE ILE ILE ALA SER LYS THR PHE THR THR GLN GLU SEQRES 18 A 561 THR LEU THR ASN ALA MET SER ALA ARG ASN ALA LEU MET SEQRES 19 A 561 SER TYR LEU LYS GLU ASN GLY ILE SER THR ASP GLY ALA SEQRES 20 A 561 VAL ALA LYS HIS PHE VAL ALA LEU SER THR ASN THR GLU SEQRES 21 A 561 LYS VAL ARG GLU PHE GLY ILE ASP THR VAL ASN MET PHE SEQRES 22 A 561 ALA PHE TRP ASP TRP VAL GLY GLY ARG TYR SER VAL TRP SEQRES 23 A 561 SER ALA ILE GLY LEU SER VAL MET LEU SER ILE GLY TYR SEQRES 24 A 561 ASP ASN PHE VAL GLU PHE LEU THR GLY ALA HIS VAL MET SEQRES 25 A 561 ASP ASN HIS PHE ALA SER THR PRO THR GLU GLN ASN LEU SEQRES 26 A 561 PRO MET MET LEU ALA LEU VAL GLY ILE TRP TYR ASN ASN SEQRES 27 A 561 PHE PHE GLY SER GLU THR GLN ALA VAL LEU PRO TYR ASP SEQRES 28 A 561 GLN TYR LEU TRP ARG LEU PRO ALA TYR LEU GLN GLN LEU SEQRES 29 A 561 ASP MET GLU SER ASN GLY LYS GLY VAL THR LYS LYS SER SEQRES 30 A 561 GLY ALA VAL ALA VAL GLN THR GLY PRO ILE VAL PHE GLY SEQRES 31 A 561 GLU ALA GLY THR ASN GLY GLN HIS ALA PHE TYR GLN LEU SEQRES 32 A 561 ILE HIS GLN GLY THR LYS ILE ILE PRO CYS ASP PHE ILE SEQRES 33 A 561 GLY CYS VAL GLN THR GLN ASN ARG VAL GLY ASP HIS HIS SEQRES 34 A 561 ARG THR LEU MET SER ASN PHE PHE ALA GLN THR GLU ALA SEQRES 35 A 561 LEU MET VAL GLY LYS ASN ALA GLU GLU VAL ARG GLN GLU SEQRES 36 A 561 LEU VAL LYS SER GLY MET SER GLY ASP ALA ILE GLU ASN SEQRES 37 A 561 MET ILE PRO HIS LYS THR PHE THR GLY SER ARG PRO SER SEQRES 38 A 561 ASN SER ILE LEU VAL ASN ALA LEU THR PRO ARG ALA LEU SEQRES 39 A 561 GLY ALA ILE ILE ALA MET TYR GLU HIS LYS VAL LEU VAL SEQRES 40 A 561 GLN GLY ALA ILE TRP GLY ILE ASN SER TYR ASP GLN TRP SEQRES 41 A 561 GLY VAL GLU LEU GLY LYS VAL LEU ALA LYS SER ILE LEU SEQRES 42 A 561 PRO GLN LEU LYS SER GLY ASN ILE VAL SER ASP HIS ASP SEQRES 43 A 561 GLY SER THR ASN GLY LEU ILE ASN MET PHE ASN THR ARG SEQRES 44 A 561 ALA HIS FORMUL 2 HOH *216(H2 O) HELIX 1 1 SER A 49 ASN A 52 5 4 HELIX 2 2 LEU A 53 GLY A 67 1 15 HELIX 3 3 SER A 70 ASP A 78 1 9 HELIX 4 4 GLN A 80 TYR A 85 1 6 HELIX 5 5 ASN A 108 ARG A 122 1 15 HELIX 6 6 GLY A 123 ASP A 133 1 11 HELIX 7 7 LEU A 146 ARG A 151 1 6 HELIX 8 8 VAL A 165 SER A 185 1 21 HELIX 9 9 GLY A 205 LEU A 218 1 14 HELIX 10 10 LYS A 219 SER A 222 5 4 HELIX 11 11 GLY A 236 LYS A 244 1 9 HELIX 12 12 ASN A 247 GLU A 249 5 3 HELIX 13 13 THR A 262 ASN A 283 1 22 HELIX 14 14 GLY A 289 HIS A 294 1 6 HELIX 15 15 ASN A 301 PHE A 308 1 8 HELIX 16 16 ASP A 311 VAL A 313 5 3 HELIX 17 17 GLY A 323 SER A 327 5 5 HELIX 18 18 SER A 330 ILE A 332 5 3 HELIX 19 19 GLY A 333 THR A 362 1 30 HELIX 20 20 PRO A 363 GLN A 366 5 4 HELIX 21 21 ASN A 367 PHE A 382 1 16 HELIX 22 22 ASP A 394 TRP A 398 5 5 HELIX 23 23 ARG A 399 GLY A 413 1 15 HELIX 24 24 PHE A 443 GLY A 450 1 8 HELIX 25 25 ASP A 470 GLY A 489 1 20 HELIX 26 26 ASN A 491 SER A 502 1 12 HELIX 27 27 MET A 512 THR A 517 1 6 HELIX 28 28 THR A 533 GLY A 556 1 24 HELIX 29 29 GLN A 562 GLY A 564 5 3 HELIX 30 30 VAL A 565 ALA A 572 1 8 HELIX 31 31 SER A 574 LEU A 579 5 6 HELIX 32 32 ASP A 589 ALA A 603 1 15 SHEET 1 A 6 SER A 86 ASP A 90 0 SHEET 2 A 6 PHE A 97 ASP A 101 -1 O LEU A 98 N ILE A 89 SHEET 3 A 6 SER A 524 VAL A 529 -1 O SER A 526 N ASP A 101 SHEET 4 A 6 CYS A 456 CYS A 461 1 N CYS A 456 O ASN A 525 SHEET 5 A 6 THR A 387 PRO A 392 1 N LEU A 391 O ASP A 457 SHEET 6 A 6 ILE A 430 PHE A 432 1 O PHE A 432 N GLN A 388 SHEET 1 B 2 ILE A 159 VAL A 160 0 SHEET 2 B 2 LYS A 163 ASP A 164 -1 O LYS A 163 N VAL A 160 SHEET 1 C 5 HIS A 227 VAL A 231 0 SHEET 2 C 5 ASN A 198 ILE A 202 1 N ILE A 199 O PHE A 229 SHEET 3 C 5 THR A 251 ALA A 256 1 O ILE A 254 N ILE A 202 SHEET 4 C 5 PHE A 295 LEU A 298 1 O VAL A 296 N ILE A 255 SHEET 5 C 5 MET A 315 PHE A 316 1 O PHE A 316 N ALA A 297 CRYST1 85.744 85.744 350.429 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011663 0.006733 0.000000 0.00000 SCALE2 0.000000 0.013467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002854 0.00000