HEADER CELL ADHESION 07-AUG-03 1Q5F TITLE NMR STRUCTURE OF TYPE IVB PILIN (PILS) FROM SALMONELLA TYPHI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 26-181; COMPND 5 SYNONYM: TYPE IVB PILIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHI; SOURCE 3 ORGANISM_TAXID: 601; SOURCE 4 GENE: PILS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-H KEYWDS TYPE IVB PILIN, ALPHA-BETA ROLL, MONOMER, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR X.F.XU,Y.W.TAN,J.HACKETT,M.ZHANG,Y.K.MOK REVDAT 4 13-NOV-24 1Q5F 1 REMARK REVDAT 3 02-MAR-22 1Q5F 1 REMARK REVDAT 2 24-FEB-09 1Q5F 1 VERSN REVDAT 1 27-JUL-04 1Q5F 0 JRNL AUTH X.F.XU,Y.W.TAN,L.LAM,J.HACKETT,M.ZHANG,Y.K.MOK JRNL TITL NMR STRUCTURE OF A TYPE IVB PILIN FROM SALMONELLA TYPHI AND JRNL TITL 2 ITS ASSEMBLY INTO PILUS JRNL REF J.BIOL.CHEM. V. 279 31599 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15159389 JRNL DOI 10.1074/JBC.M404727200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, AMBER 7.0 REMARK 3 AUTHORS : CASE (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q5F COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000019938. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.55 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PILS U-15N, 13C; 50MM REMARK 210 PHOSPHATE BUFFER; 0.5M SODIUM REMARK 210 SULFATE; 90% H2O, 10% D2O; 1MM REMARK 210 PILS 10% 13C; 50MM PHOSPHATE REMARK 210 BUFFER; 0.5M SODIUM SULFATE; 90% REMARK 210 H2O, 10% D2O; 1MM PILS U-15N; REMARK 210 50MM PHOSPHATE BUFFER; 0.5M REMARK 210 SODIUM SULFATE; 90% H2O, 10% D2O; REMARK 210 1MM PILS U-15N; 50MM PHOSPHATE REMARK 210 BUFFER; 0.5M SODIUM SULFATE; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA; AMIDE REMARK 210 PROTON EXCHANGE REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, DYANA, CYANA REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURES ARE BASED ON A TOTAL OF 2315 RESTRAINTS, REMARK 210 2033 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 206 DIHEDRAL ANGLE REMARK 210 RESTRAINTS, 76 DISTANCE RESTRAINTS FROM HYDROGEN BONDS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 27 -66.13 -128.96 REMARK 500 1 LYS A 29 -62.10 69.11 REMARK 500 1 MET A 50 34.32 -153.44 REMARK 500 1 LYS A 51 31.48 -80.18 REMARK 500 1 ASP A 54 -50.02 -160.96 REMARK 500 1 PHE A 58 166.25 58.66 REMARK 500 1 ALA A 62 -62.75 -107.17 REMARK 500 1 ALA A 73 -76.90 -82.11 REMARK 500 1 ASP A 82 115.79 -35.92 REMARK 500 1 SER A 85 86.42 52.48 REMARK 500 1 THR A 108 -43.95 -142.10 REMARK 500 1 LYS A 120 -36.57 -174.89 REMARK 500 1 VAL A 121 101.95 -48.61 REMARK 500 1 SER A 136 46.94 -150.08 REMARK 500 1 SER A 140 -33.49 -172.21 REMARK 500 1 ASN A 148 98.96 -36.62 REMARK 500 1 THR A 150 -46.48 -147.98 REMARK 500 1 ASP A 166 117.05 -177.21 REMARK 500 1 ARG A 169 79.89 -100.68 REMARK 500 2 LYS A 29 -66.96 -135.74 REMARK 500 2 MET A 49 -71.49 -136.64 REMARK 500 2 ASP A 54 110.74 65.00 REMARK 500 2 THR A 59 86.16 57.17 REMARK 500 2 ALA A 73 -81.16 -123.21 REMARK 500 2 SER A 87 57.80 -175.43 REMARK 500 2 PHE A 110 33.55 -163.02 REMARK 500 2 LYS A 120 -31.92 -171.43 REMARK 500 2 VAL A 121 107.06 -53.50 REMARK 500 2 PRO A 122 -169.47 -74.85 REMARK 500 2 SER A 136 48.44 -150.61 REMARK 500 2 THR A 139 -88.62 -69.55 REMARK 500 2 SER A 140 -40.36 172.86 REMARK 500 2 ASN A 147 34.34 -84.59 REMARK 500 2 ASN A 148 93.36 -46.32 REMARK 500 2 HIS A 149 -168.22 -113.94 REMARK 500 2 THR A 150 -49.71 -138.70 REMARK 500 2 LYS A 153 70.62 -117.91 REMARK 500 2 ALA A 165 -174.91 65.08 REMARK 500 2 ARG A 169 59.50 -174.39 REMARK 500 3 LYS A 29 -64.92 -135.92 REMARK 500 3 MET A 50 60.42 -154.74 REMARK 500 3 TYR A 56 165.95 59.78 REMARK 500 3 THR A 59 56.59 -102.38 REMARK 500 3 SER A 60 83.25 -56.64 REMARK 500 3 ALA A 73 -83.86 -110.34 REMARK 500 3 SER A 85 -33.59 160.36 REMARK 500 3 SER A 87 61.62 -179.80 REMARK 500 3 PHE A 110 29.09 -166.49 REMARK 500 3 LYS A 120 -42.90 160.38 REMARK 500 3 VAL A 121 103.64 -45.87 REMARK 500 REMARK 500 THIS ENTRY HAS 211 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5879 RELATED DB: BMRB DBREF 1Q5F A 26 181 UNP Q9ZIU9 Q9ZIU9_SALTI 51 206 SEQRES 1 A 156 MET TRP GLY LYS LYS ASP ALA GLY THR GLU LEU THR ASN SEQRES 2 A 156 TYR GLN THR LEU ALA THR ASN THR ILE GLY MET MET LYS SEQRES 3 A 156 GLY VAL ASP GLY TYR ALA PHE THR SER GLY ALA LYS MET SEQRES 4 A 156 THR ASP THR LEU ILE GLN ALA GLY ALA ALA LYS GLY MET SEQRES 5 A 156 THR VAL SER GLY ASP PRO ALA SER GLY SER ALA THR LEU SEQRES 6 A 156 TRP ASN SER TRP GLY GLY GLN ILE VAL VAL ALA PRO ASP SEQRES 7 A 156 THR ALA GLY GLY THR GLY PHE ASN ASN GLY PHE THR ILE SEQRES 8 A 156 THR THR ASN LYS VAL PRO GLN SER ALA CYS VAL SER ILE SEQRES 9 A 156 SER THR GLY MET SER ARG SER GLY GLY THR SER GLY ILE SEQRES 10 A 156 LYS ILE ASN GLY ASN ASN HIS THR ASP ALA LYS VAL THR SEQRES 11 A 156 ALA GLU ILE ALA SER SER GLU CYS THR ALA ASP ASN GLY SEQRES 12 A 156 ARG THR GLY THR ASN THR LEU VAL PHE ASN TYR ASN GLY HELIX 1 1 ALA A 32 ILE A 47 1 16 HELIX 2 2 ALA A 62 ALA A 71 1 10 HELIX 3 3 PRO A 122 ARG A 135 1 14 HELIX 4 4 THR A 155 CYS A 163 1 9 SHEET 1 A 6 VAL A 79 SER A 80 0 SHEET 2 A 6 ALA A 88 TRP A 91 -1 O THR A 89 N SER A 80 SHEET 3 A 6 GLN A 97 PRO A 102 -1 O ILE A 98 N LEU A 90 SHEET 4 A 6 GLY A 113 ASN A 119 -1 O THR A 115 N ALA A 101 SHEET 5 A 6 THR A 174 ASN A 180 -1 O PHE A 177 N ILE A 116 SHEET 6 A 6 LYS A 143 ILE A 144 -1 N LYS A 143 O VAL A 176 SSBOND 1 CYS A 126 CYS A 163 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1