HEADER TRANSFERASE 14-AUG-03 1Q6Y TITLE HYPOTHETICAL PROTEIN YFDW FROM E. COLI BOUND TO COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YFDW; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YFDW; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PSMT3 KEYWDS INTERTWINED DIMER, STRUCTURAL GENOMICS, COENZYME A, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, NYSGXRC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GOGOS,J.GORMAN,L.SHAPIRO,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 8 16-AUG-23 1Q6Y 1 REMARK REVDAT 7 03-FEB-21 1Q6Y 1 AUTHOR REMARK SEQADV REVDAT 6 13-JUL-11 1Q6Y 1 VERSN REVDAT 5 24-FEB-09 1Q6Y 1 VERSN REVDAT 4 25-JAN-05 1Q6Y 1 AUTHOR KEYWDS REMARK REVDAT 3 02-MAR-04 1Q6Y 1 JRNL REVDAT 2 23-DEC-03 1Q6Y 1 REMARK SEQADV REVDAT 1 30-SEP-03 1Q6Y 0 JRNL AUTH A.GOGOS,J.GORMAN,L.SHAPIRO JRNL TITL STRUCTURE OF ESCHERICHIA COLI YFDW, A TYPE III COA JRNL TITL 2 TRANSFERASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 507 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 14993676 JRNL DOI 10.1107/S0907444904000034 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 25765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1317 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3200 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q6Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000019993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27082 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26500 REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1PQY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 65% MPD, 0.1 M BIS-TRIS PH 6.5, 1.5 MM REMARK 280 COA, 1.5 MM OXALATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.05850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.38950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.05850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.38950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 19120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -211.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 92.11700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 420 REMARK 465 GLY A 421 REMARK 465 SER A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 3 CG CD1 CD2 REMARK 470 LYS A 11 CE NZ REMARK 470 GLU A 80 CD OE1 OE2 REMARK 470 GLU A 83 CD OE1 OE2 REMARK 470 HIS A 106 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 GLU A 131 CD OE1 OE2 REMARK 470 ARG A 194 CD NE CZ NH1 NH2 REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 162 CD PRO A 162 N 0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 14 CB - CG - OD2 ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 197 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 204 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 384 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 406 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 15 61.29 -103.27 REMARK 500 VAL A 18 -127.23 67.75 REMARK 500 ASP A 56 -0.85 56.24 REMARK 500 ASN A 98 45.31 -142.79 REMARK 500 PHE A 109 73.32 -102.08 REMARK 500 GLU A 142 -69.66 -19.70 REMARK 500 ASP A 171 -85.17 -93.78 REMARK 500 LEU A 365 -21.29 71.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MPD A 700 REMARK 610 MPD A 800 REMARK 610 MPD A 900 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PQY RELATED DB: PDB REMARK 900 HYPOTHETICAL PROTEIN YFDW FROM E. COLI REMARK 900 RELATED ID: NYSGXRC-T783 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES SER2 AND LEU3 ARISE FROM A CLONING REMARK 999 ARTIFACT THAT RESULTS IN A 2 AMINO ACID REMARK 999 INSERTION. RESIDUE NUMBERS AFTER THIS REMARK 999 INSERTION ARE EQUAL TO 2 PLUS THE CORRECT REMARK 999 RESIDUE NUMBER. DBREF 1Q6Y A 3 420 UNP P69902 FCTA_ECOLI 1 416 SEQADV 1Q6Y SER A 2 UNP P69902 CLONING ARTIFACT SEQADV 1Q6Y LEU A 3 UNP P69902 CLONING ARTIFACT SEQADV 1Q6Y GLU A 419 UNP P69902 EXPRESSION TAG SEQADV 1Q6Y GLY A 420 UNP P69902 EXPRESSION TAG SEQADV 1Q6Y GLY A 421 UNP P69902 EXPRESSION TAG SEQADV 1Q6Y SER A 422 UNP P69902 EXPRESSION TAG SEQADV 1Q6Y HIS A 425 UNP P69902 EXPRESSION TAG SEQADV 1Q6Y HIS A 426 UNP P69902 EXPRESSION TAG SEQADV 1Q6Y HIS A 427 UNP P69902 EXPRESSION TAG SEQADV 1Q6Y HIS A 428 UNP P69902 EXPRESSION TAG SEQADV 1Q6Y HIS A 427 UNP P69902 EXPRESSION TAG SEQADV 1Q6Y HIS A 428 UNP P69902 EXPRESSION TAG SEQRES 1 A 428 MET SER LEU SER THR PRO LEU GLN GLY ILE LYS VAL LEU SEQRES 2 A 428 ASP PHE THR GLY VAL GLN SER GLY PRO SER CYS THR GLN SEQRES 3 A 428 MET LEU ALA TRP PHE GLY ALA ASP VAL ILE LYS ILE GLU SEQRES 4 A 428 ARG PRO GLY VAL GLY ASP VAL THR ARG HIS GLN LEU ARG SEQRES 5 A 428 ASP ILE PRO ASP ILE ASP ALA LEU TYR PHE THR MET LEU SEQRES 6 A 428 ASN SER ASN LYS ARG SER ILE GLU LEU ASN THR LYS THR SEQRES 7 A 428 ALA GLU GLY LYS GLU VAL MET GLU LYS LEU ILE ARG GLU SEQRES 8 A 428 ALA ASP ILE LEU VAL GLU ASN PHE HIS PRO GLY ALA ILE SEQRES 9 A 428 ASP HIS MET GLY PHE THR TRP GLU HIS ILE GLN GLU ILE SEQRES 10 A 428 ASN PRO ARG LEU ILE PHE GLY SER ILE LYS GLY PHE ASP SEQRES 11 A 428 GLU CYS SER PRO TYR VAL ASN VAL LYS ALA TYR GLU ASN SEQRES 12 A 428 VAL ALA GLN ALA ALA GLY GLY ALA ALA SER THR THR GLY SEQRES 13 A 428 PHE TRP ASP GLY PRO PRO LEU VAL SER ALA ALA ALA LEU SEQRES 14 A 428 GLY ASP SER ASN THR GLY MET HIS LEU LEU ILE GLY LEU SEQRES 15 A 428 LEU ALA ALA LEU LEU HIS ARG GLU LYS THR GLY ARG GLY SEQRES 16 A 428 GLN ARG VAL THR MET SER MET GLN ASP ALA VAL LEU ASN SEQRES 17 A 428 LEU CYS ARG VAL LYS LEU ARG ASP GLN GLN ARG LEU ASP SEQRES 18 A 428 LYS LEU GLY TYR LEU GLU GLU TYR PRO GLN TYR PRO ASN SEQRES 19 A 428 GLY THR PHE GLY ASP ALA VAL PRO ARG GLY GLY ASN ALA SEQRES 20 A 428 GLY GLY GLY GLY GLN PRO GLY TRP ILE LEU LYS CYS LYS SEQRES 21 A 428 GLY TRP GLU THR ASP PRO ASN ALA TYR ILE TYR PHE THR SEQRES 22 A 428 ILE GLN GLU GLN ASN TRP GLU ASN THR CYS LYS ALA ILE SEQRES 23 A 428 GLY LYS PRO GLU TRP ILE THR ASP PRO ALA TYR SER THR SEQRES 24 A 428 ALA HIS ALA ARG GLN PRO HIS ILE PHE ASP ILE PHE ALA SEQRES 25 A 428 GLU ILE GLU LYS TYR THR VAL THR ILE ASP LYS HIS GLU SEQRES 26 A 428 ALA VAL ALA TYR LEU THR GLN PHE ASP ILE PRO CYS ALA SEQRES 27 A 428 PRO VAL LEU SER MET LYS GLU ILE SER LEU ASP PRO SER SEQRES 28 A 428 LEU ARG GLN SER GLY SER VAL VAL GLU VAL GLU GLN PRO SEQRES 29 A 428 LEU ARG GLY LYS TYR LEU THR VAL GLY CYS PRO MET LYS SEQRES 30 A 428 PHE SER ALA PHE THR PRO ASP ILE LYS ALA ALA PRO LEU SEQRES 31 A 428 LEU GLY GLU HIS THR ALA ALA VAL LEU GLN GLU LEU GLY SEQRES 32 A 428 TYR SER ASP ASP GLU ILE ALA ALA MET LYS GLN ASN HIS SEQRES 33 A 428 ALA ILE GLU GLY GLY SER HIS HIS HIS HIS HIS HIS HET COA A 500 48 HET MPD A 600 8 HET MPD A 700 6 HET MPD A 800 5 HET MPD A 900 6 HET MPD A1000 8 HET MPD A1100 8 HET MPD A1200 8 HETNAM COA COENZYME A HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 MPD 7(C6 H14 O2) FORMUL 10 HOH *276(H2 O) HELIX 1 1 GLN A 19 PHE A 31 1 13 HELIX 2 2 ASP A 45 HIS A 49 5 5 HELIX 3 3 ALA A 59 MET A 64 1 6 HELIX 4 4 THR A 78 ALA A 92 1 15 HELIX 5 5 GLY A 102 MET A 107 1 6 HELIX 6 6 THR A 110 ASN A 118 1 9 HELIX 7 7 TYR A 141 GLY A 149 1 9 HELIX 8 8 GLY A 150 THR A 155 1 6 HELIX 9 9 ASP A 171 GLY A 193 1 23 HELIX 10 10 MET A 202 CYS A 210 1 9 HELIX 11 11 CYS A 210 GLY A 224 1 15 HELIX 12 12 GLN A 275 GLN A 277 5 3 HELIX 13 13 ASN A 278 GLY A 287 1 10 HELIX 14 14 LYS A 288 THR A 293 5 6 HELIX 15 15 THR A 299 GLN A 304 1 6 HELIX 16 16 HIS A 306 VAL A 319 1 14 HELIX 17 17 ASP A 322 THR A 331 1 10 HELIX 18 18 GLN A 332 ASP A 334 5 3 HELIX 19 19 SER A 342 ASP A 349 1 8 HELIX 20 20 ASP A 349 SER A 355 1 7 HELIX 21 21 HIS A 394 LEU A 402 1 9 HELIX 22 22 SER A 405 GLU A 419 1 15 SHEET 1 A 6 ARG A 70 GLU A 73 0 SHEET 2 A 6 ASP A 34 GLU A 39 1 N LYS A 37 O ARG A 70 SHEET 3 A 6 LYS A 11 PHE A 15 1 N VAL A 12 O ASP A 34 SHEET 4 A 6 ILE A 94 GLU A 97 1 O ILE A 94 N LEU A 13 SHEET 5 A 6 ILE A 122 LYS A 127 1 O GLY A 124 N LEU A 95 SHEET 6 A 6 ARG A 197 SER A 201 1 O VAL A 198 N PHE A 123 SHEET 1 B 3 GLY A 254 LYS A 258 0 SHEET 2 B 3 TYR A 269 THR A 273 -1 O ILE A 270 N LEU A 257 SHEET 3 B 3 CYS A 337 PRO A 339 -1 O ALA A 338 N TYR A 271 SHEET 1 C 2 VAL A 358 GLN A 363 0 SHEET 2 C 2 GLY A 367 VAL A 372 -1 O GLY A 367 N GLN A 363 CISPEP 1 TYR A 232 PRO A 233 0 2.32 SITE 1 AC1 30 PHE A 15 VAL A 18 GLN A 19 SER A 20 SITE 2 AC1 30 ARG A 40 LEU A 74 ASN A 75 THR A 76 SITE 3 AC1 30 LYS A 77 ASN A 98 PHE A 99 HIS A 100 SITE 4 AC1 30 ALA A 103 MET A 107 ILE A 126 LYS A 139 SITE 5 AC1 30 ALA A 140 ASP A 171 MET A 202 GLN A 275 SITE 6 AC1 30 GLN A 277 HOH A1211 HOH A1302 HOH A1307 SITE 7 AC1 30 HOH A1329 HOH A1330 HOH A1339 HOH A1451 SITE 8 AC1 30 HOH A1453 HOH A1455 SITE 1 AC2 6 GLY A 160 ARG A 243 TRP A 262 GLU A 263 SITE 2 AC2 6 PRO A 266 TYR A 269 SITE 1 AC3 1 TYR A 317 SITE 1 AC4 2 PRO A 134 THR A 331 SITE 1 AC5 8 THR A 5 ALA A 29 TRP A 30 GLY A 32 SITE 2 AC5 8 ASN A 68 PRO A 383 ASP A 384 LYS A 386 SITE 1 AC6 4 GLN A 218 ASP A 221 LEU A 370 HOH A1257 SITE 1 AC7 5 TRP A 158 PRO A 230 GLY A 235 HOH A1243 SITE 2 AC7 5 HOH A1244 SITE 1 AC8 5 GLU A 73 THR A 395 MET A 412 LYS A 413 SITE 2 AC8 5 HOH A1272 CRYST1 92.117 66.779 73.049 90.00 108.73 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010856 0.000000 0.003681 0.00000 SCALE2 0.000000 0.014975 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014455 0.00000