HEADER TRANSFERASE 18-AUG-03 1Q7E TITLE CRYSTAL STRUCTURE OF YFDW PROTEIN FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YFDW; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YFDW; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, INTERTWINED DIMER, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GOGOS,J.GORMAN,L.SHAPIRO,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 03-FEB-21 1Q7E 1 AUTHOR REMARK SEQADV LINK REVDAT 6 13-JUL-11 1Q7E 1 VERSN REVDAT 5 24-FEB-09 1Q7E 1 VERSN REVDAT 4 25-JAN-05 1Q7E 1 AUTHOR KEYWDS REMARK REVDAT 3 02-MAR-04 1Q7E 1 JRNL REVDAT 2 23-DEC-03 1Q7E 1 REMARK MASTER REVDAT 1 30-SEP-03 1Q7E 0 JRNL AUTH A.GOGOS,J.GORMAN,L.SHAPIRO JRNL TITL STRUCTURE OF ESCHERICHIA COLI YFDW, A TYPE III COA JRNL TITL 2 TRANSFERASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 507 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 14993676 JRNL DOI 10.1107/S0907444904000034 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 53302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2723 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3156 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 362 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.012 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.400 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q7E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000020009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-03; 01-JAN-03; 01-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y REMARK 200 RADIATION SOURCE : NSLS; APS; APS REMARK 200 BEAMLINE : X9A; 31-ID; 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793; 0.9793; 0.9793 REMARK 200 MONOCHROMATOR : NULL; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH; REMARK 200 MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56025 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29500 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 70% MPD, 0.1 M BIS-TRIS PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K. 70% MPD, 0.1 M BIS- REMARK 280 TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K. 70% REMARK 280 MPD, 0.1 M BIS-TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.18300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.80250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.18300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.80250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED BY: REMARK 300 XYZ(1) = -1.0000*X+ 0.0000*Y+ 0.0000*Z+ 92.3658 REMARK 300 XYZ(2) = 0.0000*X+ 1.0000*Y+ 0.0000*Z+ -0.0016 REMARK 300 XYZ(3) = 0.0000*X+ 0.0000*Y+ -1.0000*Z+ 0.0004 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 16570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -247.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 92.36600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 102 REMARK 465 ALA A 103 REMARK 465 ILE A 104 REMARK 465 ASP A 105 REMARK 465 HIS A 106 REMARK 465 MET A 107 REMARK 465 GLY A 108 REMARK 465 GLY A 420 REMARK 465 GLY A 421 REMARK 465 SER A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CE NZ REMARK 470 ARG A 40 CZ NH1 NH2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 LYS A 139 NZ REMARK 470 GLU A 190 CD OE1 OE2 REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 64 SE MSE A 64 CE -0.355 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 18 -122.01 67.47 REMARK 500 VAL A 43 -60.79 -133.63 REMARK 500 ASN A 118 89.99 -153.17 REMARK 500 GLU A 142 -65.73 -23.47 REMARK 500 ASP A 171 -85.29 -104.89 REMARK 500 LEU A 365 -20.65 73.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MET A 500 REMARK 610 MET A 600 REMARK 610 MPD A 1100 REMARK 610 MPD A 1200 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MET A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MET A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PQY RELATED DB: PDB REMARK 900 RELATED ID: 1Q6Y RELATED DB: PDB REMARK 900 RELATED ID: NYSGXRC-T783 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES SER2 AND LEU3 ARISE FROM A CLONING ARTIFACT THAT REMARK 999 RESULTS IN A 2 AMINO ACID INSERTION. RESIDUE NUMBERS AFTER REMARK 999 THIS INSERTION ARE EQUAL TO 2 PLUS THE CORRECT RESIDUE REMARK 999 NUMBER DBREF 1Q7E A 1 418 UNP P69902 FCTA_ECOLI 1 416 SEQADV 1Q7E SER A 2 UNP P69902 INSERTION SEQADV 1Q7E LEU A 3 UNP P69902 INSERTION SEQADV 1Q7E MSE A 27 UNP P69902 MET 25 MODIFIED RESIDUE SEQADV 1Q7E MSE A 64 UNP P69902 MET 62 MODIFIED RESIDUE SEQADV 1Q7E MSE A 85 UNP P69902 MET 83 MODIFIED RESIDUE SEQADV 1Q7E MSE A 176 UNP P69902 MET 174 MODIFIED RESIDUE SEQADV 1Q7E MSE A 200 UNP P69902 MET 198 MODIFIED RESIDUE SEQADV 1Q7E MSE A 202 UNP P69902 MET 200 MODIFIED RESIDUE SEQADV 1Q7E MSE A 343 UNP P69902 MET 341 MODIFIED RESIDUE SEQADV 1Q7E MSE A 376 UNP P69902 MET 374 MODIFIED RESIDUE SEQADV 1Q7E MSE A 412 UNP P69902 MET 410 MODIFIED RESIDUE SEQADV 1Q7E GLU A 419 UNP P69902 EXPRESSION TAG SEQADV 1Q7E GLY A 420 UNP P69902 EXPRESSION TAG SEQADV 1Q7E GLY A 421 UNP P69902 EXPRESSION TAG SEQADV 1Q7E SER A 422 UNP P69902 EXPRESSION TAG SEQADV 1Q7E HIS A 423 UNP P69902 EXPRESSION TAG SEQADV 1Q7E HIS A 424 UNP P69902 EXPRESSION TAG SEQADV 1Q7E HIS A 425 UNP P69902 EXPRESSION TAG SEQADV 1Q7E HIS A 426 UNP P69902 EXPRESSION TAG SEQADV 1Q7E HIS A 427 UNP P69902 EXPRESSION TAG SEQADV 1Q7E HIS A 428 UNP P69902 EXPRESSION TAG SEQRES 1 A 428 MET SER LEU SER THR PRO LEU GLN GLY ILE LYS VAL LEU SEQRES 2 A 428 ASP PHE THR GLY VAL GLN SER GLY PRO SER CYS THR GLN SEQRES 3 A 428 MSE LEU ALA TRP PHE GLY ALA ASP VAL ILE LYS ILE GLU SEQRES 4 A 428 ARG PRO GLY VAL GLY ASP VAL THR ARG HIS GLN LEU ARG SEQRES 5 A 428 ASP ILE PRO ASP ILE ASP ALA LEU TYR PHE THR MSE LEU SEQRES 6 A 428 ASN SER ASN LYS ARG SER ILE GLU LEU ASN THR LYS THR SEQRES 7 A 428 ALA GLU GLY LYS GLU VAL MSE GLU LYS LEU ILE ARG GLU SEQRES 8 A 428 ALA ASP ILE LEU VAL GLU ASN PHE HIS PRO GLY ALA ILE SEQRES 9 A 428 ASP HIS MET GLY PHE THR TRP GLU HIS ILE GLN GLU ILE SEQRES 10 A 428 ASN PRO ARG LEU ILE PHE GLY SER ILE LYS GLY PHE ASP SEQRES 11 A 428 GLU CYS SER PRO TYR VAL ASN VAL LYS ALA TYR GLU ASN SEQRES 12 A 428 VAL ALA GLN ALA ALA GLY GLY ALA ALA SER THR THR GLY SEQRES 13 A 428 PHE TRP ASP GLY PRO PRO LEU VAL SER ALA ALA ALA LEU SEQRES 14 A 428 GLY ASP SER ASN THR GLY MSE HIS LEU LEU ILE GLY LEU SEQRES 15 A 428 LEU ALA ALA LEU LEU HIS ARG GLU LYS THR GLY ARG GLY SEQRES 16 A 428 GLN ARG VAL THR MSE SER MSE GLN ASP ALA VAL LEU ASN SEQRES 17 A 428 LEU CYS ARG VAL LYS LEU ARG ASP GLN GLN ARG LEU ASP SEQRES 18 A 428 LYS LEU GLY TYR LEU GLU GLU TYR PRO GLN TYR PRO ASN SEQRES 19 A 428 GLY THR PHE GLY ASP ALA VAL PRO ARG GLY GLY ASN ALA SEQRES 20 A 428 GLY GLY GLY GLY GLN PRO GLY TRP ILE LEU LYS CYS LYS SEQRES 21 A 428 GLY TRP GLU THR ASP PRO ASN ALA TYR ILE TYR PHE THR SEQRES 22 A 428 ILE GLN GLU GLN ASN TRP GLU ASN THR CYS LYS ALA ILE SEQRES 23 A 428 GLY LYS PRO GLU TRP ILE THR ASP PRO ALA TYR SER THR SEQRES 24 A 428 ALA HIS ALA ARG GLN PRO HIS ILE PHE ASP ILE PHE ALA SEQRES 25 A 428 GLU ILE GLU LYS TYR THR VAL THR ILE ASP LYS HIS GLU SEQRES 26 A 428 ALA VAL ALA TYR LEU THR GLN PHE ASP ILE PRO CYS ALA SEQRES 27 A 428 PRO VAL LEU SER MSE LYS GLU ILE SER LEU ASP PRO SER SEQRES 28 A 428 LEU ARG GLN SER GLY SER VAL VAL GLU VAL GLU GLN PRO SEQRES 29 A 428 LEU ARG GLY LYS TYR LEU THR VAL GLY CYS PRO MSE LYS SEQRES 30 A 428 PHE SER ALA PHE THR PRO ASP ILE LYS ALA ALA PRO LEU SEQRES 31 A 428 LEU GLY GLU HIS THR ALA ALA VAL LEU GLN GLU LEU GLY SEQRES 32 A 428 TYR SER ASP ASP GLU ILE ALA ALA MSE LYS GLN ASN HIS SEQRES 33 A 428 ALA ILE GLU GLY GLY SER HIS HIS HIS HIS HIS HIS MODRES 1Q7E MSE A 27 MET SELENOMETHIONINE MODRES 1Q7E MSE A 64 MET SELENOMETHIONINE MODRES 1Q7E MSE A 85 MET SELENOMETHIONINE MODRES 1Q7E MSE A 176 MET SELENOMETHIONINE MODRES 1Q7E MSE A 200 MET SELENOMETHIONINE MODRES 1Q7E MSE A 202 MET SELENOMETHIONINE MODRES 1Q7E MSE A 343 MET SELENOMETHIONINE MODRES 1Q7E MSE A 376 MET SELENOMETHIONINE MODRES 1Q7E MSE A 412 MET SELENOMETHIONINE HET MSE A 27 16 HET MSE A 64 8 HET MSE A 85 8 HET MSE A 176 8 HET MSE A 200 8 HET MSE A 202 8 HET MSE A 343 8 HET MSE A 376 8 HET MSE A 412 8 HET MET A 500 6 HET MET A 600 8 HET MPD A 700 8 HET MPD A 800 8 HET MPD A 900 8 HET MPD A1000 8 HET MPD A1100 5 HET MPD A1200 6 HET MPD A1300 8 HETNAM MSE SELENOMETHIONINE HETNAM MET METHIONINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 MET 2(C5 H11 N O2 S) FORMUL 4 MPD 7(C6 H14 O2) FORMUL 11 HOH *362(H2 O) HELIX 1 1 GLN A 19 PHE A 31 1 13 HELIX 2 2 ASP A 45 HIS A 49 5 5 HELIX 3 3 ALA A 59 MSE A 64 1 6 HELIX 4 4 THR A 78 ALA A 92 1 15 HELIX 5 5 THR A 110 ASN A 118 1 9 HELIX 6 6 TYR A 141 GLY A 149 1 9 HELIX 7 7 GLY A 150 THR A 155 1 6 HELIX 8 8 ASP A 171 GLY A 193 1 23 HELIX 9 9 MSE A 202 CYS A 210 1 9 HELIX 10 10 CYS A 210 GLY A 224 1 15 HELIX 11 11 GLN A 275 GLN A 277 5 3 HELIX 12 12 ASN A 278 ILE A 286 1 9 HELIX 13 13 LYS A 288 THR A 293 5 6 HELIX 14 14 THR A 299 GLN A 304 1 6 HELIX 15 15 HIS A 306 VAL A 319 1 14 HELIX 16 16 ASP A 322 THR A 331 1 10 HELIX 17 17 GLN A 332 ASP A 334 5 3 HELIX 18 18 SER A 342 ASP A 349 1 8 HELIX 19 19 ASP A 349 SER A 355 1 7 HELIX 20 20 HIS A 394 LEU A 402 1 9 HELIX 21 21 SER A 405 GLU A 419 1 15 SHEET 1 A 6 ARG A 70 GLU A 73 0 SHEET 2 A 6 ASP A 34 GLU A 39 1 N LYS A 37 O ARG A 70 SHEET 3 A 6 LYS A 11 ASP A 14 1 N ASP A 14 O ILE A 36 SHEET 4 A 6 ILE A 94 GLU A 97 1 O ILE A 94 N LEU A 13 SHEET 5 A 6 ILE A 122 LYS A 127 1 O GLY A 124 N LEU A 95 SHEET 6 A 6 ARG A 197 SER A 201 1 O VAL A 198 N PHE A 123 SHEET 1 B 3 GLY A 254 LYS A 258 0 SHEET 2 B 3 TYR A 269 THR A 273 -1 O PHE A 272 N TRP A 255 SHEET 3 B 3 CYS A 337 PRO A 339 -1 O ALA A 338 N TYR A 271 SHEET 1 C 2 VAL A 358 GLN A 363 0 SHEET 2 C 2 GLY A 367 VAL A 372 -1 O GLY A 367 N GLN A 363 LINK C GLN A 26 N AMSE A 27 1555 1555 1.32 LINK C GLN A 26 N BMSE A 27 1555 1555 1.33 LINK C AMSE A 27 N LEU A 28 1555 1555 1.33 LINK C BMSE A 27 N LEU A 28 1555 1555 1.34 LINK C THR A 63 N MSE A 64 1555 1555 1.34 LINK C MSE A 64 N LEU A 65 1555 1555 1.33 LINK C VAL A 84 N MSE A 85 1555 1555 1.33 LINK C MSE A 85 N GLU A 86 1555 1555 1.33 LINK C GLY A 175 N MSE A 176 1555 1555 1.32 LINK C MSE A 176 N HIS A 177 1555 1555 1.34 LINK C THR A 199 N MSE A 200 1555 1555 1.33 LINK C MSE A 200 N SER A 201 1555 1555 1.33 LINK C SER A 201 N MSE A 202 1555 1555 1.33 LINK C MSE A 202 N GLN A 203 1555 1555 1.35 LINK C SER A 342 N MSE A 343 1555 1555 1.33 LINK C MSE A 343 N BLYS A 344 1555 1555 1.33 LINK C MSE A 343 N ALYS A 344 1555 1555 1.33 LINK C PRO A 375 N MSE A 376 1555 1555 1.32 LINK C MSE A 376 N LYS A 377 1555 1555 1.33 LINK C ALA A 411 N MSE A 412 1555 1555 1.33 LINK C MSE A 412 N LYS A 413 1555 1555 1.33 CISPEP 1 TYR A 232 PRO A 233 0 -2.03 SITE 1 AC1 11 ASN A 98 PHE A 99 HIS A 100 PRO A 101 SITE 2 AC1 11 ILE A 126 LYS A 127 GLY A 128 LYS A 139 SITE 3 AC1 11 ALA A 140 HOH A1625 HOH A1662 SITE 1 AC2 6 TRP A 255 PHE A 308 ALA A 312 GLU A 315 SITE 2 AC2 6 HOH A1395 HOH A1527 SITE 1 AC3 8 GLY A 160 ARG A 243 TRP A 262 GLU A 263 SITE 2 AC3 8 ASP A 265 PRO A 266 TYR A 269 HOH A1460 SITE 1 AC4 8 GLU A 73 LEU A 74 ASN A 75 THR A 395 SITE 2 AC4 8 MSE A 412 HIS A 416 HOH A1530 HOH A1536 SITE 1 AC5 6 TRP A 158 PRO A 230 GLN A 231 GLY A 235 SITE 2 AC5 6 HOH A1387 HOH A1425 SITE 1 AC6 2 ALA A 285 HOH A1634 SITE 1 AC7 4 PRO A 134 ALA A 328 THR A 331 HOH A1493 SITE 1 AC8 5 THR A 5 TRP A 30 GLY A 32 PRO A 383 SITE 2 AC8 5 ASP A 384 SITE 1 AC9 7 LYS A 11 LEU A 13 LEU A 88 GLU A 91 SITE 2 AC9 7 GLU A 401 HOH A1430 HOH A1558 CRYST1 92.366 69.605 73.219 90.00 108.63 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010826 0.000000 0.003650 0.00000 SCALE2 0.000000 0.014367 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014413 0.00000