HEADER TRANSFERASE 21-AUG-03 1Q8I TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI DNA POLYMERASE II COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE II; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL II; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: POLB OR DINA OR B0060; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA POLYMERASE II, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.S.BRUNZELLE,C.R.A.MUCHMORE,N.MASHHOON,M.BLAIR-JOHNSON,L.SHUVALOVA, AUTHOR 2 M.F.GOODMAN,W.F.ANDERSON,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (MCSG) REVDAT 6 14-FEB-24 1Q8I 1 REMARK REVDAT 5 27-OCT-21 1Q8I 1 SEQADV REVDAT 4 13-JUL-11 1Q8I 1 VERSN REVDAT 3 24-FEB-09 1Q8I 1 VERSN REVDAT 2 18-JAN-05 1Q8I 1 AUTHOR KEYWDS REMARK REVDAT 1 27-JAN-04 1Q8I 0 JRNL AUTH J.S.BRUNZELLE,C.R.A.MUCHMORE,N.MASHHOON,M.BLAIR-JOHNSON, JRNL AUTH 2 L.SHUVALOVA,M.F.GOODMAN,W.F.ANDERSON JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI DNA POLYMERASE II JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 57543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3064 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4118 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 236 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5709 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 416 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.59000 REMARK 3 B22 (A**2) : -0.64000 REMARK 3 B33 (A**2) : 2.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 99.357 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5886 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7981 ; 1.636 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 704 ; 4.816 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 1063 ;20.633 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1036 ;18.472 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 846 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4567 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2813 ; 0.240 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 901 ; 0.204 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 80 ; 0.239 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 56 ; 0.283 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3523 ; 3.171 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5680 ; 4.285 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2363 ; 6.473 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2301 ; 8.990 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): 42.6726 98.5899 57.3773 REMARK 3 T TENSOR REMARK 3 T11: 0.1408 T22: 0.0981 REMARK 3 T33: 0.1326 T12: 0.0058 REMARK 3 T13: -0.0465 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 5.6309 L22: 1.2126 REMARK 3 L33: 1.0429 L12: -1.0405 REMARK 3 L13: 1.5159 L23: -0.3640 REMARK 3 S TENSOR REMARK 3 S11: -0.1689 S12: -0.4198 S13: 0.2280 REMARK 3 S21: 0.0955 S22: -0.0225 S23: 0.0174 REMARK 3 S31: -0.2316 S32: 0.0074 S33: 0.1914 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 147 A 360 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0915 116.1703 33.4208 REMARK 3 T TENSOR REMARK 3 T11: 0.2524 T22: 0.2321 REMARK 3 T33: 0.4100 T12: 0.0337 REMARK 3 T13: 0.2514 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 2.4665 L22: 16.1570 REMARK 3 L33: 1.3255 L12: -2.5905 REMARK 3 L13: 0.7185 L23: -3.4093 REMARK 3 S TENSOR REMARK 3 S11: 0.1453 S12: 0.6383 S13: 0.4200 REMARK 3 S21: -1.7720 S22: -0.3446 S23: -2.3099 REMARK 3 S31: 0.3172 S32: 0.2603 S33: 0.1994 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 361 A 600 REMARK 3 ORIGIN FOR THE GROUP (A): 39.7032 74.6273 32.2737 REMARK 3 T TENSOR REMARK 3 T11: 0.0767 T22: 0.0395 REMARK 3 T33: 0.0570 T12: 0.0217 REMARK 3 T13: 0.0468 T23: 0.0441 REMARK 3 L TENSOR REMARK 3 L11: 1.8792 L22: 1.6981 REMARK 3 L33: 2.2367 L12: 0.5998 REMARK 3 L13: 0.8275 L23: 1.4719 REMARK 3 S TENSOR REMARK 3 S11: -0.0251 S12: 0.2447 S13: 0.1380 REMARK 3 S21: -0.2350 S22: -0.0131 S23: -0.0010 REMARK 3 S31: -0.0929 S32: 0.0510 S33: 0.0382 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 601 A 783 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3969 84.9460 -2.1388 REMARK 3 T TENSOR REMARK 3 T11: 0.3534 T22: 0.6327 REMARK 3 T33: 0.0880 T12: 0.1024 REMARK 3 T13: -0.0055 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 1.7122 L22: 5.0768 REMARK 3 L33: 6.4035 L12: 1.8869 REMARK 3 L13: -3.2804 L23: -5.6375 REMARK 3 S TENSOR REMARK 3 S11: -0.0486 S12: -0.5414 S13: -0.0174 REMARK 3 S21: 0.6110 S22: 0.0007 S23: -0.0657 REMARK 3 S31: -0.5089 S32: 0.1586 S33: 0.0479 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000020049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100; NULL REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y REMARK 200 RADIATION SOURCE : APS; APS; APS REMARK 200 BEAMLINE : 5ID-B; 5ID-B; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0; 1.0; 1.77 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL; SI 111 CHANNEL; REMARK 200 NULL REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; NULL REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; CUSTOM-MADE; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60657 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CITRATE , PEG3K, DTT, EDTA, GLYCEROL, REMARK 280 PH 5.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K. CITRATE REMARK 280 , PEG3K, DTT, EDTA, GLYCEROL, PH 5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K. CITRATE , PEG3K, DTT, MGCL2, GLYCEROL, REMARK 280 PH 5.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.19150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.29800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.19150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.29800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 302 REMARK 465 GLU A 303 REMARK 465 GLY A 304 REMARK 465 LYS A 305 REMARK 465 SER A 306 REMARK 465 ILE A 307 REMARK 465 ASP A 308 REMARK 465 ASN A 309 REMARK 465 PRO A 310 REMARK 465 TRP A 311 REMARK 465 ASP A 312 REMARK 465 ARG A 313 REMARK 465 VAL A 637 REMARK 465 ARG A 638 REMARK 465 ARG A 685 REMARK 465 LYS A 686 REMARK 465 ARG A 687 REMARK 465 LEU A 688 REMARK 465 ARG A 689 REMARK 465 ARG A 690 REMARK 465 PRO A 691 REMARK 465 LEU A 692 REMARK 465 SER A 693 REMARK 465 GLU A 694 REMARK 465 TYR A 695 REMARK 465 GLN A 696 REMARK 465 ARG A 697 REMARK 465 ASN A 698 REMARK 465 VAL A 699 REMARK 465 PRO A 700 REMARK 465 PRO A 701 REMARK 465 HIS A 702 REMARK 465 VAL A 703 REMARK 465 ARG A 704 REMARK 465 ALA A 705 REMARK 465 ALA A 706 REMARK 465 ARG A 707 REMARK 465 LEU A 708 REMARK 465 ALA A 709 REMARK 465 ASP A 710 REMARK 465 GLU A 711 REMARK 465 GLU A 712 REMARK 465 ASN A 713 REMARK 465 GLN A 714 REMARK 465 LYS A 715 REMARK 465 ARG A 716 REMARK 465 GLY A 717 REMARK 465 ARG A 718 REMARK 465 PRO A 719 REMARK 465 LEU A 720 REMARK 465 GLN A 721 REMARK 465 TYR A 722 REMARK 465 GLN A 723 REMARK 465 ASN A 724 REMARK 465 ARG A 725 REMARK 465 GLY A 726 REMARK 465 THR A 727 REMARK 465 ILE A 728 REMARK 465 LYS A 729 REMARK 465 TYR A 730 REMARK 465 VAL A 731 REMARK 465 TRP A 732 REMARK 465 THR A 733 REMARK 465 THR A 734 REMARK 465 ASN A 735 REMARK 465 GLY A 736 REMARK 465 PRO A 737 REMARK 465 GLU A 738 REMARK 465 PRO A 739 REMARK 465 LEU A 740 REMARK 465 ASP A 741 REMARK 465 TYR A 742 REMARK 465 GLN A 743 REMARK 465 ARG A 744 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 ASP A 406 CG OD1 OD2 REMARK 470 ARG A 607 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 783 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1047 O HOH A 1076 1.73 REMARK 500 O MET A 314 N GLU A 316 1.97 REMARK 500 OE1 GLU A 196 O HOH A 856 1.98 REMARK 500 O ARG A 248 OG SER A 251 1.98 REMARK 500 OE1 GLU A 206 O HOH A 908 2.05 REMARK 500 NH2 ARG A 176 O ASP A 192 2.10 REMARK 500 NH2 ARG A 272 O HOH A 1162 2.17 REMARK 500 O HOH A 872 O HOH A 955 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 231 O HOH A 1125 2675 2.01 REMARK 500 NH1 ARG A 84 O HOH A 1168 1556 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 113 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 113 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 118 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 PRO A 183 C - N - CD ANGL. DEV. = -17.7 DEGREES REMARK 500 ASP A 364 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 GLY A 367 N - CA - C ANGL. DEV. = 15.4 DEGREES REMARK 500 ASP A 512 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 522 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 522 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 610 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 770 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 121 -82.78 -110.28 REMARK 500 PRO A 183 95.53 45.72 REMARK 500 PHE A 228 -75.80 -109.66 REMARK 500 ASP A 249 -141.31 59.68 REMARK 500 ASN A 250 -88.56 -57.64 REMARK 500 SER A 251 111.83 32.68 REMARK 500 PHE A 260 -93.09 -79.10 REMARK 500 PHE A 285 163.29 94.24 REMARK 500 TRP A 286 151.69 62.97 REMARK 500 ASN A 287 124.25 109.77 REMARK 500 PHE A 288 -166.20 -113.87 REMARK 500 SER A 289 -84.44 96.89 REMARK 500 SER A 290 -65.91 -143.32 REMARK 500 PHE A 291 4.41 134.93 REMARK 500 LEU A 300 -69.06 83.40 REMARK 500 ASP A 315 -17.69 -10.62 REMARK 500 ARG A 365 -17.27 157.36 REMARK 500 SER A 399 112.20 69.60 REMARK 500 SER A 414 89.14 69.53 REMARK 500 SER A 422 65.05 31.35 REMARK 500 ASP A 434 136.60 -174.32 REMARK 500 ASP A 545 -143.92 -125.87 REMARK 500 THR A 611 44.81 -91.96 REMARK 500 LYS A 614 -136.02 -105.48 REMARK 500 TYR A 617 165.63 175.62 REMARK 500 LEU A 634 -137.16 160.22 REMARK 500 GLN A 756 -58.00 -133.25 REMARK 500 GLU A 769 38.28 73.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 182 PRO A 183 -136.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 182 -16.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC50001 RELATED DB: TARGETDB DBREF 1Q8I A 1 783 UNP P21189 DPO2_ECOLI 0 782 SEQADV 1Q8I VAL A 428 UNP P21189 ILE 427 ENGINEERED MUTATION SEQRES 1 A 783 MET ALA GLN ALA GLY PHE ILE LEU THR ARG HIS TRP ARG SEQRES 2 A 783 ASP THR PRO GLN GLY THR GLU VAL SER PHE TRP LEU ALA SEQRES 3 A 783 THR ASP ASN GLY PRO LEU GLN VAL THR LEU ALA PRO GLN SEQRES 4 A 783 GLU SER VAL ALA PHE ILE PRO ALA ASP GLN VAL PRO ARG SEQRES 5 A 783 ALA GLN HIS ILE LEU GLN GLY GLU GLN GLY PHE ARG LEU SEQRES 6 A 783 THR PRO LEU ALA LEU LYS ASP PHE HIS ARG GLN PRO VAL SEQRES 7 A 783 TYR GLY LEU TYR CYS ARG ALA HIS ARG GLN LEU MET ASN SEQRES 8 A 783 TYR GLU LYS ARG LEU ARG GLU GLY GLY VAL THR VAL TYR SEQRES 9 A 783 GLU ALA ASP VAL ARG PRO PRO GLU ARG TYR LEU MET GLU SEQRES 10 A 783 ARG PHE ILE THR SER PRO VAL TRP VAL GLU GLY ASP MET SEQRES 11 A 783 HIS ASN GLY THR ILE VAL ASN ALA ARG LEU LYS PRO HIS SEQRES 12 A 783 PRO ASP TYR ARG PRO PRO LEU LYS TRP VAL SER ILE ASP SEQRES 13 A 783 ILE GLU THR THR ARG HIS GLY GLU LEU TYR CYS ILE GLY SEQRES 14 A 783 LEU GLU GLY CYS GLY GLN ARG ILE VAL TYR MET LEU GLY SEQRES 15 A 783 PRO GLU ASN GLY ASP ALA SER SER LEU ASP PHE GLU LEU SEQRES 16 A 783 GLU TYR VAL ALA SER ARG PRO GLN LEU LEU GLU LYS LEU SEQRES 17 A 783 ASN ALA TRP PHE ALA ASN TYR ASP PRO ASP VAL ILE ILE SEQRES 18 A 783 GLY TRP ASN VAL VAL GLN PHE ASP LEU ARG MET LEU GLN SEQRES 19 A 783 LYS HIS ALA GLU ARG TYR ARG LEU PRO LEU ARG LEU GLY SEQRES 20 A 783 ARG ASP ASN SER GLU LEU GLU TRP ARG GLU HIS GLY PHE SEQRES 21 A 783 LYS ASN GLY VAL PHE PHE ALA GLN ALA LYS GLY ARG LEU SEQRES 22 A 783 ILE ILE ASP GLY ILE GLU ALA LEU LYS SER ALA PHE TRP SEQRES 23 A 783 ASN PHE SER SER PHE SER LEU GLU THR VAL ALA GLN GLU SEQRES 24 A 783 LEU LEU GLY GLU GLY LYS SER ILE ASP ASN PRO TRP ASP SEQRES 25 A 783 ARG MET ASP GLU ILE ASP ARG ARG PHE ALA GLU ASP LYS SEQRES 26 A 783 PRO ALA LEU ALA THR TYR ASN LEU LYS ASP CYS GLU LEU SEQRES 27 A 783 VAL THR GLN ILE PHE HIS LYS THR GLU ILE MET PRO PHE SEQRES 28 A 783 LEU LEU GLU ARG ALA THR VAL ASN GLY LEU PRO VAL ASP SEQRES 29 A 783 ARG HIS GLY GLY SER VAL ALA ALA PHE GLY HIS LEU TYR SEQRES 30 A 783 PHE PRO ARG MET HIS ARG ALA GLY TYR VAL ALA PRO ASN SEQRES 31 A 783 LEU GLY GLU VAL PRO PRO HIS ALA SER PRO GLY GLY TYR SEQRES 32 A 783 VAL MET ASP SER ARG PRO GLY LEU TYR ASP SER VAL LEU SEQRES 33 A 783 VAL LEU ASP TYR LYS SER LEU TYR PRO SER ILE VAL ARG SEQRES 34 A 783 THR PHE LEU ILE ASP PRO VAL GLY LEU VAL GLU GLY MET SEQRES 35 A 783 ALA GLN PRO ASP PRO GLU HIS SER THR GLU GLY PHE LEU SEQRES 36 A 783 ASP ALA TRP PHE SER ARG GLU LYS HIS CYS LEU PRO GLU SEQRES 37 A 783 ILE VAL THR ASN ILE TRP HIS GLY ARG ASP GLU ALA LYS SEQRES 38 A 783 ARG GLN GLY ASN LYS PRO LEU SER GLN ALA LEU LYS ILE SEQRES 39 A 783 ILE MET ASN ALA PHE TYR GLY VAL LEU GLY THR THR ALA SEQRES 40 A 783 CYS ARG PHE PHE ASP PRO ARG LEU ALA SER SER ILE THR SEQRES 41 A 783 MET ARG GLY HIS GLN ILE MET ARG GLN THR LYS ALA LEU SEQRES 42 A 783 ILE GLU ALA GLN GLY TYR ASP VAL ILE TYR GLY ASP THR SEQRES 43 A 783 ASP SER THR PHE VAL TRP LEU LYS GLY ALA HIS SER GLU SEQRES 44 A 783 GLU GLU ALA ALA LYS ILE GLY ARG ALA LEU VAL GLN HIS SEQRES 45 A 783 VAL ASN ALA TRP TRP ALA GLU THR LEU GLN LYS GLN ARG SEQRES 46 A 783 LEU THR SER ALA LEU GLU LEU GLU TYR GLU THR HIS PHE SEQRES 47 A 783 CYS ARG PHE LEU MET PRO THR ILE ARG GLY ALA ASP THR SEQRES 48 A 783 GLY SER LYS LYS ARG TYR ALA GLY LEU ILE GLN GLU GLY SEQRES 49 A 783 ASP LYS GLN ARG MET VAL PHE LYS GLY LEU GLU THR VAL SEQRES 50 A 783 ARG THR ASP TRP THR PRO LEU ALA GLN GLN PHE GLN GLN SEQRES 51 A 783 GLU LEU TYR LEU ARG ILE PHE ARG ASN GLU PRO TYR GLN SEQRES 52 A 783 GLU TYR VAL ARG GLU THR ILE ASP LYS LEU MET ALA GLY SEQRES 53 A 783 GLU LEU ASP ALA ARG LEU VAL TYR ARG LYS ARG LEU ARG SEQRES 54 A 783 ARG PRO LEU SER GLU TYR GLN ARG ASN VAL PRO PRO HIS SEQRES 55 A 783 VAL ARG ALA ALA ARG LEU ALA ASP GLU GLU ASN GLN LYS SEQRES 56 A 783 ARG GLY ARG PRO LEU GLN TYR GLN ASN ARG GLY THR ILE SEQRES 57 A 783 LYS TYR VAL TRP THR THR ASN GLY PRO GLU PRO LEU ASP SEQRES 58 A 783 TYR GLN ARG SER PRO LEU ASP TYR GLU HIS TYR LEU THR SEQRES 59 A 783 ARG GLN LEU GLN PRO VAL ALA GLU GLY ILE LEU PRO PHE SEQRES 60 A 783 ILE GLU ASP ASN PHE ALA THR LEU MET THR GLY GLN LEU SEQRES 61 A 783 GLY LEU PHE FORMUL 2 HOH *416(H2 O) HELIX 1 1 GLN A 49 LEU A 57 1 9 HELIX 2 2 ALA A 85 GLY A 99 1 15 HELIX 3 3 ARG A 109 ARG A 118 1 10 HELIX 4 4 SER A 200 ASP A 216 1 17 HELIX 5 5 PHE A 228 TYR A 240 1 13 HELIX 6 6 GLY A 277 ALA A 284 1 8 HELIX 7 7 SER A 292 GLN A 298 1 7 HELIX 8 8 ASP A 315 ASP A 324 1 10 HELIX 9 9 ASP A 324 GLU A 347 1 24 HELIX 10 10 GLU A 347 GLY A 360 1 14 HELIX 11 11 GLY A 368 ALA A 384 1 17 HELIX 12 12 SER A 422 LEU A 432 1 11 HELIX 13 13 ASP A 434 GLN A 444 1 11 HELIX 14 14 CYS A 465 GLN A 483 1 19 HELIX 15 15 ASN A 485 GLY A 504 1 20 HELIX 16 16 ASP A 512 GLN A 537 1 26 HELIX 17 17 SER A 558 LYS A 583 1 26 HELIX 18 18 THR A 642 ARG A 658 1 17 HELIX 19 19 TYR A 662 ALA A 675 1 14 HELIX 20 20 LEU A 678 VAL A 683 5 6 HELIX 21 21 ASP A 748 GLN A 756 1 9 HELIX 22 22 GLN A 756 GLY A 763 1 8 HELIX 23 23 ILE A 764 GLU A 769 5 6 HELIX 24 24 ASN A 771 GLY A 781 1 11 SHEET 1 A 5 GLY A 30 THR A 35 0 SHEET 2 A 5 GLU A 20 THR A 27 -1 N LEU A 25 O LEU A 32 SHEET 3 A 5 GLN A 3 ARG A 13 -1 N ARG A 13 O GLU A 20 SHEET 4 A 5 PRO A 123 HIS A 131 -1 O VAL A 124 N GLY A 5 SHEET 5 A 5 THR A 134 PRO A 142 -1 O VAL A 136 N ASP A 129 SHEET 1 B 3 SER A 41 PRO A 46 0 SHEET 2 B 3 PRO A 77 CYS A 83 -1 O TYR A 79 N ILE A 45 SHEET 3 B 3 PHE A 63 LYS A 71 -1 N THR A 66 O GLY A 80 SHEET 1 C 6 GLU A 194 VAL A 198 0 SHEET 2 C 6 GLN A 175 LEU A 181 1 N MET A 180 O VAL A 198 SHEET 3 C 6 LEU A 165 GLY A 172 -1 N ILE A 168 O TYR A 179 SHEET 4 C 6 TRP A 152 THR A 159 -1 N GLU A 158 O TYR A 166 SHEET 5 C 6 VAL A 219 GLY A 222 1 O ILE A 221 N VAL A 153 SHEET 6 C 6 LEU A 273 ASP A 276 1 O LEU A 273 N ILE A 220 SHEET 1 D 2 GLU A 254 HIS A 258 0 SHEET 2 D 2 VAL A 264 GLN A 268 -1 O PHE A 266 N ARG A 256 SHEET 1 E 7 MET A 405 SER A 407 0 SHEET 2 E 7 ASP A 540 GLY A 544 -1 O GLY A 544 N MET A 405 SHEET 3 E 7 SER A 548 TRP A 552 -1 O PHE A 550 N TYR A 543 SHEET 4 E 7 GLY A 410 TYR A 420 -1 N LEU A 416 O VAL A 551 SHEET 5 E 7 LEU A 592 MET A 603 -1 O PHE A 601 N TYR A 412 SHEET 6 E 7 TYR A 617 GLU A 623 -1 O ALA A 618 N LEU A 602 SHEET 7 E 7 LYS A 626 LYS A 632 -1 O ARG A 628 N ILE A 621 SHEET 1 F 2 SER A 450 GLU A 452 0 SHEET 2 F 2 TRP A 458 SER A 460 -1 O PHE A 459 N THR A 451 CRYST1 92.383 116.596 82.430 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010825 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012132 0.00000