HEADER METAL BINDING PROTEIN 21-AUG-03 1Q8L TITLE SECOND METAL BINDING DOMAIN OF THE MENKES ATPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER-TRANSPORTING ATPASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SECOND COPPER BINDING DOMAIN (RESIDUES 164-246); COMPND 5 SYNONYM: COPPER PUMP 1, MENKES DISEASE-ASSOCIATED PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ATP7A OR MNK OR MC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET29-A KEYWDS METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.E.JONES,N.L.DALY,P.A.COBINE,D.J.CRAIK,C.T.DAMERON REVDAT 3 02-MAR-22 1Q8L 1 REMARK SEQADV REVDAT 2 24-FEB-09 1Q8L 1 VERSN REVDAT 1 20-JAN-04 1Q8L 0 JRNL AUTH C.E.JONES,N.L.DALY,P.A.COBINE,D.J.CRAIK,C.T.DAMERON JRNL TITL STRUCTURE AND METAL BINDING STUDIES OF THE SECOND COPPER JRNL TITL 2 BINDING DOMAIN OF THE MENKES ATPASE. JRNL REF J.STRUCT.BIOL. V. 143 209 2003 JRNL REFN ISSN 1047-8477 JRNL PMID 14572476 JRNL DOI 10.1016/J.JSB.2003.08.008 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUGNER A. T REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q8L COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000020052. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 30MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM MNKR2, U-15N, 20MM REMARK 210 POTASSIUM PHOSPHATE, 10 MM REMARK 210 SODIUM CHLORIDE, PH6.5. REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_15N REMARK 210 -SEPARATED_NOESY; DQF-COSY; 3D_ REMARK 210 15N-SEPERATED_TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5, XEASY 3.2 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 6 PHE A 72 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 4 -94.53 -163.56 REMARK 500 1 GLN A 5 79.01 -105.73 REMARK 500 1 ALA A 6 -56.89 -121.45 REMARK 500 1 MET A 18 -78.78 61.68 REMARK 500 1 THR A 19 -48.26 -133.99 REMARK 500 1 CYS A 20 53.35 -173.16 REMARK 500 1 CYS A 23 -87.19 -145.85 REMARK 500 1 THR A 24 -8.79 52.58 REMARK 500 1 GLN A 38 -77.22 -93.36 REMARK 500 1 ASP A 45 -86.47 56.59 REMARK 500 1 GLN A 47 52.18 33.87 REMARK 500 1 GLU A 48 95.66 -67.48 REMARK 500 1 PRO A 55 40.14 -85.71 REMARK 500 1 HIS A 56 16.06 -151.07 REMARK 500 1 PHE A 72 75.09 -118.92 REMARK 500 1 LYS A 78 94.88 -60.91 REMARK 500 2 SER A 2 -33.09 -144.71 REMARK 500 2 MET A 18 101.56 44.48 REMARK 500 2 HIS A 21 -121.10 -163.88 REMARK 500 2 CYS A 23 26.93 -146.00 REMARK 500 2 GLN A 38 -81.97 -95.81 REMARK 500 2 LEU A 44 1.56 -67.31 REMARK 500 2 ASN A 46 71.93 54.35 REMARK 500 2 HIS A 56 23.46 -154.17 REMARK 500 2 LYS A 77 -92.02 -32.18 REMARK 500 2 LYS A 78 -81.53 58.61 REMARK 500 2 LEU A 83 76.75 -155.41 REMARK 500 3 SER A 2 -51.89 -158.03 REMARK 500 3 MET A 18 -144.66 63.34 REMARK 500 3 THR A 19 -40.41 -172.83 REMARK 500 3 CYS A 23 36.84 -85.15 REMARK 500 3 GLU A 28 -70.36 -59.96 REMARK 500 3 GLN A 38 -83.22 -94.76 REMARK 500 3 ASP A 45 87.96 -62.19 REMARK 500 3 PRO A 55 38.36 -87.18 REMARK 500 3 HIS A 56 18.46 -156.23 REMARK 500 3 PHE A 75 89.52 -69.13 REMARK 500 3 GLN A 79 66.31 -172.31 REMARK 500 4 SER A 2 92.06 56.76 REMARK 500 4 MET A 3 -170.70 58.22 REMARK 500 4 ALA A 6 -47.44 -153.83 REMARK 500 4 GLU A 8 -176.96 41.73 REMARK 500 4 MET A 18 -114.46 58.54 REMARK 500 4 THR A 19 -43.01 177.15 REMARK 500 4 GLN A 38 -78.19 -95.63 REMARK 500 4 ASP A 45 -103.96 57.72 REMARK 500 4 GLN A 47 80.64 32.16 REMARK 500 4 HIS A 56 19.66 -156.96 REMARK 500 4 LYS A 77 133.19 71.60 REMARK 500 4 LYS A 78 165.13 65.08 REMARK 500 REMARK 500 THIS ENTRY HAS 272 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AW0 RELATED DB: PDB REMARK 900 FOURTH METAL-BINDING DOMAIN OF THE MENKES COPPER TRANSPORTING REMARK 900 ATPASE. DBREF 1Q8L A 2 84 UNP Q04656 ATP7A_HUMAN 164 246 SEQADV 1Q8L GLY A 1 UNP Q04656 CLONING ARTIFACT SEQRES 1 A 84 GLY SER MET ALA GLN ALA GLY GLU VAL VAL LEU LYS MET SEQRES 2 A 84 LYS VAL GLU GLY MET THR CYS HIS SER CYS THR SER THR SEQRES 3 A 84 ILE GLU GLY LYS ILE GLY LYS LEU GLN GLY VAL GLN ARG SEQRES 4 A 84 ILE LYS VAL SER LEU ASP ASN GLN GLU ALA THR ILE VAL SEQRES 5 A 84 TYR GLN PRO HIS LEU ILE SER VAL GLU GLU MET LYS LYS SEQRES 6 A 84 GLN ILE GLU ALA MET GLY PHE PRO ALA PHE VAL LYS LYS SEQRES 7 A 84 GLN PRO LYS TYR LEU LYS HELIX 1 1 THR A 24 LYS A 33 1 10 HELIX 2 2 SER A 59 MET A 70 1 12 SHEET 1 A 4 VAL A 37 VAL A 42 0 SHEET 2 A 4 GLU A 48 TYR A 53 -1 O THR A 50 N LYS A 41 SHEET 3 A 4 VAL A 9 VAL A 15 -1 N VAL A 9 O TYR A 53 SHEET 4 A 4 ALA A 74 PHE A 75 -1 O PHE A 75 N LYS A 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1