HEADER TRANSFERASE 27-APR-99 1QBQ TITLE STRUCTURE OF RAT FARNESYL PROTEIN TRANSFERASE COMPLEXED WITH A CVIM TITLE 2 PEPTIDE AND ALPHA-HYDROXYFARNESYLPHOSPHONIC ACID. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FPT ALPHA-SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: ALPHA AND BETA SUBUNITS FORM THE BIOLOGICAL UNIT; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FPT BETA-SUBUNIT; COMPND 9 CHAIN: B; COMPND 10 EC: 2.5.1.-; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: ACETYL-CYS-VAL-ILE-SELENOMET-COOH PEPTIDE; COMPND 14 CHAIN: P; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 7 ORGANISM_COMMON: NORWAY RAT; SOURCE 8 ORGANISM_TAXID: 10116; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: PURCHASED FROM ANASPEC INC. KEYWDS ALPHA-ALPHA-BARREL HELICAL CRESCENT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.L.STRICKLAND,W.T.WINDSOR,R.SYTO,L.WANG,R.BOND,Z.WU,J.SCHWARTZ, AUTHOR 2 H.V.LE,L.S.BEESE,P.C.WEBER REVDAT 7 16-OCT-24 1QBQ 1 REMARK REVDAT 6 13-MAR-24 1QBQ 1 COMPND SOURCE REMARK LINK REVDAT 5 04-OCT-17 1QBQ 1 REMARK REVDAT 4 24-FEB-09 1QBQ 1 VERSN REVDAT 3 01-APR-03 1QBQ 1 JRNL REVDAT 2 27-MAR-00 1QBQ 1 DBREF COMPND REVDAT 1 18-JUN-99 1QBQ 0 JRNL AUTH C.L.STRICKLAND,W.T.WINDSOR,R.SYTO,L.WANG,R.BOND,Z.WU, JRNL AUTH 2 J.SCHWARTZ,H.V.LE,L.S.BEESE,P.C.WEBER JRNL TITL CRYSTAL STRUCTURE OF FARNESYL PROTEIN TRANSFERASE COMPLEXED JRNL TITL 2 WITH A CAAX PEPTIDE AND FARNESYL DIPHOSPHATE ANALOGUE JRNL REF BIOCHEMISTRY V. 37 16601 1998 JRNL REFN ISSN 0006-2960 JRNL PMID 9843427 JRNL DOI 10.1021/BI981197Z REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Z.WU,M.DEMMA,C.L.STRICKLAND,R.SYTO,H.V.LE,P.C.WEBER, REMARK 1 AUTH 2 W.T.WINDSOR REMARK 1 TITL ENGINEERING OF PROTEIN FARNESYL TRANSFERASE FOR REMARK 1 TITL 2 CO-CRYSTALLIZATION. EXPRESSION, PURIFICATION AND KINETIC REMARK 1 TITL 3 CHARACTERIZATION OF BETA-SUBUNIT C-TERMINAL MUTANTS. REMARK 1 REF PROTEIN ENG. V. 12 101 1999 REMARK 1 REFN ISSN 0269-2139 REMARK 1 DOI 10.1093/PROTEIN/12.2.101 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 40344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5846 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QBQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-99. REMARK 100 THE DEPOSITION ID IS D_1000009051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-97 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42739 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.37100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG 4000, 0.1 M SODIUM ACETATE, PH REMARK 280 5.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.23500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.47000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.85250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.08750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.61750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 45 REMARK 465 ALA A 46 REMARK 465 ALA A 47 REMARK 465 ALA A 48 REMARK 465 SER A 49 REMARK 465 PRO A 50 REMARK 465 MET A 51 REMARK 465 ASP A 52 REMARK 465 ASP A 53 REMARK 465 GLY A 54 REMARK 465 HIS A 367 REMARK 465 SER A 368 REMARK 465 ARG A 369 REMARK 465 GLU A 370 REMARK 465 SER A 371 REMARK 465 ASP A 372 REMARK 465 ILE A 373 REMARK 465 PRO A 374 REMARK 465 ALA A 375 REMARK 465 SER A 376 REMARK 465 VAL A 377 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 PHE B 7 REMARK 465 THR B 8 REMARK 465 TYR B 9 REMARK 465 TYR B 10 REMARK 465 CYS B 11 REMARK 465 PRO B 12 REMARK 465 PRO B 13 REMARK 465 SER B 14 REMARK 465 SER B 15 REMARK 465 SER B 16 REMARK 465 PRO B 17 REMARK 465 VAL B 18 REMARK 465 TRP B 19 REMARK 465 SER B 20 REMARK 465 GLU B 21 REMARK 465 PRO B 22 REMARK 465 GLU B 424 REMARK 465 GLU B 425 REMARK 465 CYS B 426 REMARK 465 GLU B 427 REMARK 465 ASP B 428 REMARK 465 ALA B 429 REMARK 465 VAL B 430 REMARK 465 THR B 431 REMARK 465 SER B 432 REMARK 465 ASP B 433 REMARK 465 PRO B 434 REMARK 465 ALA B 435 REMARK 465 THR B 436 REMARK 465 ASP B 437 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 88 55.46 26.67 REMARK 500 ASN A 127 87.44 -154.17 REMARK 500 ALA A 197 2.11 -59.83 REMARK 500 LEU A 215 56.28 -102.38 REMARK 500 THR A 247 -68.81 -106.99 REMARK 500 LEU A 269 -45.78 -158.54 REMARK 500 ASP A 286 61.18 -103.47 REMARK 500 ARG A 287 -11.00 168.76 REMARK 500 LEU A 295 -70.17 -44.95 REMARK 500 HIS A 306 43.65 -149.09 REMARK 500 PRO A 309 0.92 -66.54 REMARK 500 GLN A 326 122.93 61.56 REMARK 500 ASP A 349 67.28 -161.71 REMARK 500 ARG A 352 66.05 -115.63 REMARK 500 SER B 60 0.27 -66.92 REMARK 500 GLN B 74 64.87 -58.97 REMARK 500 PRO B 119 129.70 -31.43 REMARK 500 GLN B 120 -8.41 -55.35 REMARK 500 PHE B 222 31.65 -97.59 REMARK 500 ARG B 266 -7.60 -58.92 REMARK 500 LYS B 294 -166.78 -108.63 REMARK 500 GLN B 318 34.96 -93.33 REMARK 500 ALA B 322 2.77 -61.91 REMARK 500 MET B 329 48.39 -80.24 REMARK 500 SER B 378 47.70 -173.83 REMARK 500 LEU B 382 67.05 -153.24 REMARK 500 VAL B 389 115.95 -38.80 REMARK 500 PRO B 390 -5.87 -56.62 REMARK 500 PRO B 399 3.66 -62.35 REMARK 500 PRO B 421 81.59 -57.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 338 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ACT A 2002 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 297 OD2 REMARK 620 2 ASP B 297 OD1 57.9 REMARK 620 3 CYS B 299 SG 100.0 99.4 REMARK 620 4 HIS B 362 NE2 131.6 88.4 120.6 REMARK 620 5 CYS P 1 SG 90.7 139.8 111.3 97.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HFP B 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FT1 RELATED DB: PDB REMARK 900 STRUCTURE OF UNLIGANDED FPT. REMARK 900 RELATED ID: 1FT2 RELATED DB: PDB REMARK 900 STRUCTURE OF FPT COMPLEXED TO FPP. REMARK 900 RELATED ID: 1FPP RELATED DB: PDB REMARK 900 STRUCTURE OF FPT COMPLEXED TO FPP. DBREF 1QBQ A 45 377 UNP Q04631 PFTA_RAT 45 377 DBREF 1QBQ B 1 437 UNP Q02293 PFTB_RAT 1 437 DBREF 1QBQ P 0 4 PDB 1QBQ 1QBQ 0 4 SEQRES 1 A 333 GLU ALA ALA ALA SER PRO MET ASP ASP GLY PHE LEU SER SEQRES 2 A 333 LEU ASP SER PRO THR TYR VAL LEU TYR ARG ASP ARG ALA SEQRES 3 A 333 GLU TRP ALA ASP ILE ASP PRO VAL PRO GLN ASN ASP GLY SEQRES 4 A 333 PRO SER PRO VAL VAL GLN ILE ILE TYR SER GLU LYS PHE SEQRES 5 A 333 ARG ASP VAL TYR ASP TYR PHE ARG ALA VAL LEU GLN ARG SEQRES 6 A 333 ASP GLU ARG SER GLU ARG ALA PHE LYS LEU THR ARG ASP SEQRES 7 A 333 ALA ILE GLU LEU ASN ALA ALA ASN TYR THR VAL TRP HIS SEQRES 8 A 333 PHE ARG ARG VAL LEU LEU ARG SER LEU GLN LYS ASP LEU SEQRES 9 A 333 GLN GLU GLU MET ASN TYR ILE THR ALA ILE ILE GLU GLU SEQRES 10 A 333 GLN PRO LYS ASN TYR GLN VAL TRP HIS HIS ARG ARG VAL SEQRES 11 A 333 LEU VAL GLU TRP LEU LYS ASP PRO SER GLN GLU LEU GLU SEQRES 12 A 333 PHE ILE ALA ASP ILE LEU ASN GLN ASP ALA LYS ASN TYR SEQRES 13 A 333 HIS ALA TRP GLN HIS ARG GLN TRP VAL ILE GLN GLU PHE SEQRES 14 A 333 ARG LEU TRP ASP ASN GLU LEU GLN TYR VAL ASP GLN LEU SEQRES 15 A 333 LEU LYS GLU ASP VAL ARG ASN ASN SER VAL TRP ASN GLN SEQRES 16 A 333 ARG HIS PHE VAL ILE SER ASN THR THR GLY TYR SER ASP SEQRES 17 A 333 ARG ALA VAL LEU GLU ARG GLU VAL GLN TYR THR LEU GLU SEQRES 18 A 333 MET ILE LYS LEU VAL PRO HIS ASN GLU SER ALA TRP ASN SEQRES 19 A 333 TYR LEU LYS GLY ILE LEU GLN ASP ARG GLY LEU SER ARG SEQRES 20 A 333 TYR PRO ASN LEU LEU ASN GLN LEU LEU ASP LEU GLN PRO SEQRES 21 A 333 SER HIS SER SER PRO TYR LEU ILE ALA PHE LEU VAL ASP SEQRES 22 A 333 ILE TYR GLU ASP MET LEU GLU ASN GLN CYS ASP ASN LYS SEQRES 23 A 333 GLU ASP ILE LEU ASN LYS ALA LEU GLU LEU CYS GLU ILE SEQRES 24 A 333 LEU ALA LYS GLU LYS ASP THR ILE ARG LYS GLU TYR TRP SEQRES 25 A 333 ARG TYR ILE GLY ARG SER LEU GLN SER LYS HIS SER ARG SEQRES 26 A 333 GLU SER ASP ILE PRO ALA SER VAL SEQRES 1 B 437 MET ALA SER SER SER SER PHE THR TYR TYR CYS PRO PRO SEQRES 2 B 437 SER SER SER PRO VAL TRP SER GLU PRO LEU TYR SER LEU SEQRES 3 B 437 ARG PRO GLU HIS ALA ARG GLU ARG LEU GLN ASP ASP SER SEQRES 4 B 437 VAL GLU THR VAL THR SER ILE GLU GLN ALA LYS VAL GLU SEQRES 5 B 437 GLU LYS ILE GLN GLU VAL PHE SER SER TYR LYS PHE ASN SEQRES 6 B 437 HIS LEU VAL PRO ARG LEU VAL LEU GLN ARG GLU LYS HIS SEQRES 7 B 437 PHE HIS TYR LEU LYS ARG GLY LEU ARG GLN LEU THR ASP SEQRES 8 B 437 ALA TYR GLU CYS LEU ASP ALA SER ARG PRO TRP LEU CYS SEQRES 9 B 437 TYR TRP ILE LEU HIS SER LEU GLU LEU LEU ASP GLU PRO SEQRES 10 B 437 ILE PRO GLN ILE VAL ALA THR ASP VAL CYS GLN PHE LEU SEQRES 11 B 437 GLU LEU CYS GLN SER PRO ASP GLY GLY PHE GLY GLY GLY SEQRES 12 B 437 PRO GLY GLN TYR PRO HIS LEU ALA PRO THR TYR ALA ALA SEQRES 13 B 437 VAL ASN ALA LEU CYS ILE ILE GLY THR GLU GLU ALA TYR SEQRES 14 B 437 ASN VAL ILE ASN ARG GLU LYS LEU LEU GLN TYR LEU TYR SEQRES 15 B 437 SER LEU LYS GLN PRO ASP GLY SER PHE LEU MET HIS VAL SEQRES 16 B 437 GLY GLY GLU VAL ASP VAL ARG SER ALA TYR CYS ALA ALA SEQRES 17 B 437 SER VAL ALA SER LEU THR ASN ILE ILE THR PRO ASP LEU SEQRES 18 B 437 PHE GLU GLY THR ALA GLU TRP ILE ALA ARG CYS GLN ASN SEQRES 19 B 437 TRP GLU GLY GLY ILE GLY GLY VAL PRO GLY MET GLU ALA SEQRES 20 B 437 HIS GLY GLY TYR THR PHE CYS GLY LEU ALA ALA LEU VAL SEQRES 21 B 437 ILE LEU LYS LYS GLU ARG SER LEU ASN LEU LYS SER LEU SEQRES 22 B 437 LEU GLN TRP VAL THR SER ARG GLN MET ARG PHE GLU GLY SEQRES 23 B 437 GLY PHE GLN GLY ARG CYS ASN LYS LEU VAL ASP GLY CYS SEQRES 24 B 437 TYR SER PHE TRP GLN ALA GLY LEU LEU PRO LEU LEU HIS SEQRES 25 B 437 ARG ALA LEU HIS ALA GLN GLY ASP PRO ALA LEU SER MET SEQRES 26 B 437 SER HIS TRP MET PHE HIS GLN GLN ALA LEU GLN GLU TYR SEQRES 27 B 437 ILE LEU MET CYS CYS GLN CYS PRO ALA GLY GLY LEU LEU SEQRES 28 B 437 ASP LYS PRO GLY LYS SER ARG ASP PHE TYR HIS THR CYS SEQRES 29 B 437 TYR CYS LEU SER GLY LEU SER ILE ALA GLN HIS PHE GLY SEQRES 30 B 437 SER GLY ALA MET LEU HIS ASP VAL VAL MET GLY VAL PRO SEQRES 31 B 437 GLU ASN VAL LEU GLN PRO THR HIS PRO VAL TYR ASN ILE SEQRES 32 B 437 GLY PRO ASP LYS VAL ILE GLN ALA THR THR HIS PHE LEU SEQRES 33 B 437 GLN LYS PRO VAL PRO GLY PHE GLU GLU CYS GLU ASP ALA SEQRES 34 B 437 VAL THR SER ASP PRO ALA THR ASP SEQRES 1 P 5 ACE CYS VAL ILE MSE MODRES 1QBQ MSE P 4 MET SELENOMETHIONINE HET ACE P 0 3 HET MSE P 4 9 HET ACT A2002 3 HET ZN B1000 1 HET HFP B2001 20 HETNAM ACE ACETYL GROUP HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM ZN ZINC ION HETNAM HFP ALPHA-HYDROXYFARNESYLPHOSPHONIC ACID FORMUL 3 ACE C2 H4 O FORMUL 3 MSE C5 H11 N O2 SE FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 ZN ZN 2+ FORMUL 6 HFP C15 H33 O4 P FORMUL 7 HOH *284(H2 O) HELIX 1 1 SER A 93 ASP A 110 1 18 HELIX 2 2 SER A 113 ASN A 127 1 15 HELIX 3 3 ASN A 130 LEU A 144 1 15 HELIX 4 4 ASP A 147 GLN A 162 1 16 HELIX 5 5 ASN A 165 LYS A 180 1 16 HELIX 6 6 GLN A 184 ASP A 196 1 13 HELIX 7 7 ASN A 199 ARG A 214 1 16 HELIX 8 8 ASN A 218 ASP A 230 1 13 HELIX 9 9 ASN A 233 THR A 247 1 15 HELIX 10 10 ASP A 252 LYS A 268 1 17 HELIX 11 11 ASN A 273 GLN A 285 1 13 HELIX 12 12 GLY A 288 ARG A 291 5 4 HELIX 13 13 TYR A 292 HIS A 306 1 15 HELIX 14 14 SER A 308 ASN A 325 1 18 HELIX 15 15 ASN A 329 GLU A 347 1 19 HELIX 16 16 ASP A 349 ILE A 351 5 3 HELIX 17 17 ARG A 352 LYS A 366 1 15 HELIX 18 18 GLU B 29 ARG B 34 5 6 HELIX 19 19 THR B 42 HIS B 66 1 25 HELIX 20 20 GLN B 74 LEU B 86 1 13 HELIX 21 21 THR B 90 ASP B 97 5 8 HELIX 22 22 SER B 99 LEU B 114 1 16 HELIX 23 23 ILE B 121 GLN B 134 1 14 HELIX 24 24 HIS B 149 GLY B 164 1 16 HELIX 25 25 THR B 165 ILE B 172 1 8 HELIX 26 26 ASN B 173 LYS B 185 1 13 HELIX 27 27 VAL B 201 THR B 214 1 14 HELIX 28 28 GLY B 224 CYS B 232 1 9 HELIX 29 29 HIS B 248 LEU B 262 1 15 HELIX 30 30 LYS B 264 LEU B 268 5 5 HELIX 31 31 ASN B 269 ARG B 280 1 12 HELIX 32 32 CYS B 299 GLN B 304 1 6 HELIX 33 33 GLY B 306 GLN B 318 1 13 HELIX 34 34 HIS B 331 CYS B 343 1 13 HELIX 35 35 ASP B 359 HIS B 375 1 17 HELIX 36 36 VAL B 389 VAL B 393 5 5 HELIX 37 37 GLY B 404 GLN B 417 1 14 SHEET 1 A 2 GLN A 89 ILE A 90 0 SHEET 2 A 2 GLN B 88 LEU B 89 1 N LEU B 89 O GLN A 89 LINK C ACE P 0 N CYS P 1 1555 1555 1.32 LINK C ILE P 3 N MSE P 4 1555 1555 1.33 LINK OD2 ASP B 297 ZN ZN B1000 1555 1555 1.91 LINK OD1 ASP B 297 ZN ZN B1000 1555 1555 2.45 LINK SG CYS B 299 ZN ZN B1000 1555 1555 2.21 LINK NE2 HIS B 362 ZN ZN B1000 1555 1555 2.24 LINK ZN ZN B1000 SG CYS P 1 1555 1555 2.48 SITE 1 AC1 4 ASP B 297 CYS B 299 HIS B 362 CYS P 1 SITE 1 AC2 2 ARG A 104 GLY B 145 SITE 1 AC3 15 LYS A 164 TYR A 166 TYR A 200 TYR B 205 SITE 2 AC3 15 HIS B 248 GLY B 250 TYR B 251 ARG B 291 SITE 3 AC3 15 TRP B 303 TYR B 361 HOH B1004 HOH B1041 SITE 4 AC3 15 HOH B1149 HOH B1196 ILE P 3 CRYST1 174.132 174.132 69.705 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005743 0.003316 0.000000 0.00000 SCALE2 0.000000 0.006631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014346 0.00000