data_1QCS # _entry.id 1QCS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1QCS RCSB RCSB009092 WWPDB D_1000009092 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1nsf 'D2 domain of NSF' unspecified PDB 1d2n 'D2 domain of NSF' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1QCS _pdbx_database_status.recvd_initial_deposition_date 1999-05-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yu, R.C.' 1 'Jahn, R.' 2 'Brunger, A.T.' 3 # _citation.id primary _citation.title 'NSF N-terminal domain crystal structure: models of NSF function.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 4 _citation.page_first 97 _citation.page_last 107 _citation.year 1999 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10445031 _citation.pdbx_database_id_DOI '10.1016/S1097-2765(00)80191-4' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Yu, R.C.' 1 primary 'Jahn, R.' 2 primary 'Brunger, A.T.' 3 # _cell.entry_id 1QCS _cell.length_a 32.042 _cell.length_b 175.362 _cell.length_c 79.663 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QCS _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'N-ETHYLMALEIMIDE SENSITIVE FACTOR (NSF-N)' 23548.947 1 ? ? 'N-TERMINAL DOMAIN OF NSF' 'THIS PROTEIN IS ONE DOMAIN OF THREE IN THE NSF PROTOMER. BIOLOGICALLY NSF IS A HEXAMER.' 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 water nat water 18.015 130 ? ? ? ? # _entity_keywords.entity_id 1 _entity_keywords.text 'THIS PROTEIN IS ONE DOMAIN OF THREE IN THE NSF PROTOMER. BIOLOGICALLY NSF IS A HEXAMER.' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSHN(MSE)AGRS(MSE)QAARCPTDELSLSNCAVVSEKDYQSGQHVIVRTSPNHKYIFTLRTHPSVVPGSVAFSLPQRK WAGLSIGQEIEVALYSFDKAKQCIGT(MSE)TIEIDFLQKKNIDSNPYDTDK(MSE)AAEFIQQFNNQAFSVGQQLVFSF NDKLFGLLVKDIEA(MSE)DPSILKGEPASGKRQKIEVGLVVGNSQVAFEKAENSSLNLIGKAKTKENRLE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHNMAGRSMQAARCPTDELSLSNCAVVSEKDYQSGQHVIVRTSPNHKYIFTLRTHPSVVPGSVAFSLPQRKWAGLSIGQ EIEVALYSFDKAKQCIGTMTIEIDFLQKKNIDSNPYDTDKMAAEFIQQFNNQAFSVGQQLVFSFNDKLFGLLVKDIEAMD PSILKGEPASGKRQKIEVGLVVGNSQVAFEKAENSSLNLIGKAKTKENRLE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 ASN n 1 5 MSE n 1 6 ALA n 1 7 GLY n 1 8 ARG n 1 9 SER n 1 10 MSE n 1 11 GLN n 1 12 ALA n 1 13 ALA n 1 14 ARG n 1 15 CYS n 1 16 PRO n 1 17 THR n 1 18 ASP n 1 19 GLU n 1 20 LEU n 1 21 SER n 1 22 LEU n 1 23 SER n 1 24 ASN n 1 25 CYS n 1 26 ALA n 1 27 VAL n 1 28 VAL n 1 29 SER n 1 30 GLU n 1 31 LYS n 1 32 ASP n 1 33 TYR n 1 34 GLN n 1 35 SER n 1 36 GLY n 1 37 GLN n 1 38 HIS n 1 39 VAL n 1 40 ILE n 1 41 VAL n 1 42 ARG n 1 43 THR n 1 44 SER n 1 45 PRO n 1 46 ASN n 1 47 HIS n 1 48 LYS n 1 49 TYR n 1 50 ILE n 1 51 PHE n 1 52 THR n 1 53 LEU n 1 54 ARG n 1 55 THR n 1 56 HIS n 1 57 PRO n 1 58 SER n 1 59 VAL n 1 60 VAL n 1 61 PRO n 1 62 GLY n 1 63 SER n 1 64 VAL n 1 65 ALA n 1 66 PHE n 1 67 SER n 1 68 LEU n 1 69 PRO n 1 70 GLN n 1 71 ARG n 1 72 LYS n 1 73 TRP n 1 74 ALA n 1 75 GLY n 1 76 LEU n 1 77 SER n 1 78 ILE n 1 79 GLY n 1 80 GLN n 1 81 GLU n 1 82 ILE n 1 83 GLU n 1 84 VAL n 1 85 ALA n 1 86 LEU n 1 87 TYR n 1 88 SER n 1 89 PHE n 1 90 ASP n 1 91 LYS n 1 92 ALA n 1 93 LYS n 1 94 GLN n 1 95 CYS n 1 96 ILE n 1 97 GLY n 1 98 THR n 1 99 MSE n 1 100 THR n 1 101 ILE n 1 102 GLU n 1 103 ILE n 1 104 ASP n 1 105 PHE n 1 106 LEU n 1 107 GLN n 1 108 LYS n 1 109 LYS n 1 110 ASN n 1 111 ILE n 1 112 ASP n 1 113 SER n 1 114 ASN n 1 115 PRO n 1 116 TYR n 1 117 ASP n 1 118 THR n 1 119 ASP n 1 120 LYS n 1 121 MSE n 1 122 ALA n 1 123 ALA n 1 124 GLU n 1 125 PHE n 1 126 ILE n 1 127 GLN n 1 128 GLN n 1 129 PHE n 1 130 ASN n 1 131 ASN n 1 132 GLN n 1 133 ALA n 1 134 PHE n 1 135 SER n 1 136 VAL n 1 137 GLY n 1 138 GLN n 1 139 GLN n 1 140 LEU n 1 141 VAL n 1 142 PHE n 1 143 SER n 1 144 PHE n 1 145 ASN n 1 146 ASP n 1 147 LYS n 1 148 LEU n 1 149 PHE n 1 150 GLY n 1 151 LEU n 1 152 LEU n 1 153 VAL n 1 154 LYS n 1 155 ASP n 1 156 ILE n 1 157 GLU n 1 158 ALA n 1 159 MSE n 1 160 ASP n 1 161 PRO n 1 162 SER n 1 163 ILE n 1 164 LEU n 1 165 LYS n 1 166 GLY n 1 167 GLU n 1 168 PRO n 1 169 ALA n 1 170 SER n 1 171 GLY n 1 172 LYS n 1 173 ARG n 1 174 GLN n 1 175 LYS n 1 176 ILE n 1 177 GLU n 1 178 VAL n 1 179 GLY n 1 180 LEU n 1 181 VAL n 1 182 VAL n 1 183 GLY n 1 184 ASN n 1 185 SER n 1 186 GLN n 1 187 VAL n 1 188 ALA n 1 189 PHE n 1 190 GLU n 1 191 LYS n 1 192 ALA n 1 193 GLU n 1 194 ASN n 1 195 SER n 1 196 SER n 1 197 LEU n 1 198 ASN n 1 199 LEU n 1 200 ILE n 1 201 GLY n 1 202 LYS n 1 203 ALA n 1 204 LYS n 1 205 THR n 1 206 LYS n 1 207 GLU n 1 208 ASN n 1 209 ARG n 1 210 LEU n 1 211 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Chinese hamster' _entity_src_gen.gene_src_genus Cricetulus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue OVARY _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Cricetulus griseus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10029 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PET-15B _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NSF_CRIGR _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P18708 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1QCS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 209 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P18708 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 205 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 205 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1QCS GLY A 1 ? UNP P18708 ? ? 'SEE REMARK 999' -3 1 1 1QCS SER A 2 ? UNP P18708 ? ? 'SEE REMARK 999' -2 2 1 1QCS HIS A 3 ? UNP P18708 ? ? 'SEE REMARK 999' -1 3 1 1QCS ASN A 4 ? UNP P18708 ? ? 'SEE REMARK 999' 0 4 1 1QCS MSE A 5 ? UNP P18708 MET 1 'MODIFIED RESIDUE' 1 5 1 1QCS MSE A 10 ? UNP P18708 MET 6 'MODIFIED RESIDUE' 6 6 1 1QCS MSE A 99 ? UNP P18708 MET 95 'MODIFIED RESIDUE' 95 7 1 1QCS MSE A 121 ? UNP P18708 MET 117 'MODIFIED RESIDUE' 117 8 1 1QCS MSE A 159 ? UNP P18708 MET 155 'MODIFIED RESIDUE' 155 9 1 1QCS LEU A 210 ? UNP P18708 ? ? 'SEE REMARK 999' 206 10 1 1QCS GLU A 211 ? UNP P18708 ? ? 'SEE REMARK 999' 207 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1QCS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_percent_sol 48.21 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.7 _exptl_crystal_grow.pdbx_details ;Vapor diffusion, hanging drop, 100 mM Tris pH 8.7, 2.0 M ammonium sulfate, 10 mM dithiothreitol (DTT), VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.pdbx_collection_date 1998-02-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9799 1.0 2 0.9801 1.0 3 0.9998 1.0 4 0.9537 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9799, 0.9801, 0.9998, 0.9537' # _reflns.entry_id 1QCS _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.9 _reflns.number_obs 32752 _reflns.number_all 37996 _reflns.percent_possible_obs 98.0 _reflns.pdbx_Rmerge_I_obs 0.0570000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.4 _reflns.B_iso_Wilson_estimate 12.1 _reflns.pdbx_redundancy 3.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 92.7 _reflns_shell.Rmerge_I_obs 0.0510000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 2.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3100 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1QCS _refine.ls_number_reflns_obs 32739 _refine.ls_number_reflns_all 34181 _refine.pdbx_ls_sigma_I 0.00 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 2145257.79 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 95.8 _refine.ls_R_factor_obs 0.2130000 _refine.ls_R_factor_all 0.2130000 _refine.ls_R_factor_R_work 0.2100000 _refine.ls_R_factor_R_free 0.2420000 _refine.ls_R_factor_R_free_error 0.004 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 3195 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 25.5 _refine.aniso_B[1][1] -5.53 _refine.aniso_B[2][2] -3.62 _refine.aniso_B[3][3] 9.16 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.403 _refine.solvent_model_param_bsol 46.28 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;MLHL target function and density modified, combined phases used in refinements. Wavelength 3 (low energy remote, 0.9998 Angstrom) data used for refinement. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh and Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.overall_SU_ML ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_R_Free_selection_details 'random 10%' _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1QCS _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.15 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.14 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1517 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 130 _refine_hist.number_atoms_total 1662 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.3 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.79 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.11 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.82 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.70 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.73 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 2.02 _refine_ls_shell.number_reflns_R_work 4359 _refine_ls_shell.R_factor_R_work 0.2270000 _refine_ls_shell.percent_reflns_obs 85.2 _refine_ls_shell.R_factor_R_free 0.2590000 _refine_ls_shell.R_factor_R_free_error 0.012 _refine_ls_shell.percent_reflns_R_free 9.9 _refine_ls_shell.number_reflns_R_free 478 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1QCS _struct.title 'N-TERMINAL DOMAIN OF N-ETHYLMALEIMIDE SENSITIVE FACTOR (NSF)' _struct.pdbx_descriptor 'N-ETHYLMALEIMIDE SENSITIVE FACTOR (NSF)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1QCS _struct_keywords.pdbx_keywords 'FUSION PROTEIN' _struct_keywords.text 'DOUBLE-PSI BETA BARREL ALPHA BETA ROLL, FUSION PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ;Is one domain of three in the NSF protomer. Biologically NSF is a hexamer. SYMMETRY OPERATORS AND RELEVANT TRANSLATIONS FOR HEXAMERIZATION ARE UNKNOWN. NSF CONTAINS 3 DOMAINS: N, D1, AND D2. D2 IS THE HEXAMERIZATION DOMAIN. BOTH THE SPATIAL ORIENTATION OF N RELATIVE TO D2, AND THE STRUCTURE OF IN THE INTERMEDIATE D1 DOMAIN ARE NOT KNOWN. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 17 ? SER A 23 ? THR A 13 SER A 19 1 ? 7 HELX_P HELX_P2 2 SER A 67 ? GLY A 75 ? SER A 63 GLY A 71 1 ? 9 HELX_P HELX_P3 3 ASP A 90 ? CYS A 95 ? ASP A 86 CYS A 91 1 ? 6 HELX_P HELX_P4 4 GLN A 107 ? ILE A 111 ? GLN A 103 ILE A 107 5 ? 5 HELX_P HELX_P5 5 THR A 118 ? ASN A 130 ? THR A 114 ASN A 126 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ASN 4 C ? ? ? 1_555 A MSE 5 N ? ? A ASN 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 5 C ? ? ? 1_555 A ALA 6 N ? ? A MSE 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale ? ? A SER 9 C ? ? ? 1_555 A MSE 10 N ? ? A SER 5 A MSE 6 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A MSE 10 C ? ? ? 1_555 A GLN 11 N ? ? A MSE 6 A GLN 7 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? A THR 98 C ? ? ? 1_555 A MSE 99 N ? ? A THR 94 A MSE 95 1_555 ? ? ? ? ? ? ? 1.326 ? covale6 covale ? ? A MSE 99 C ? ? ? 1_555 A THR 100 N ? ? A MSE 95 A THR 96 1_555 ? ? ? ? ? ? ? 1.326 ? covale7 covale ? ? A LYS 120 C ? ? ? 1_555 A MSE 121 N ? ? A LYS 116 A MSE 117 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale ? ? A MSE 121 C ? ? ? 1_555 A ALA 122 N ? ? A MSE 117 A ALA 118 1_555 ? ? ? ? ? ? ? 1.326 ? covale9 covale ? ? A ALA 158 C ? ? ? 1_555 A MSE 159 N ? ? A ALA 154 A MSE 155 1_555 ? ? ? ? ? ? ? 1.334 ? covale10 covale ? ? A MSE 159 C ? ? ? 1_555 A ASP 160 N ? ? A MSE 155 A ASP 156 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 4 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel C 1 2 ? parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 8 ? ARG A 14 ? ARG A 4 ARG A 10 A 2 SER A 63 ? PHE A 66 ? SER A 59 PHE A 62 A 3 ARG A 8 ? ARG A 14 ? ARG A 4 ARG A 10 A 4 GLU A 81 ? TYR A 87 ? GLU A 77 TYR A 83 A 5 HIS A 38 ? SER A 44 ? HIS A 34 SER A 40 A 6 HIS A 47 ? THR A 55 ? HIS A 43 THR A 51 A 7 ALA A 26 ? VAL A 28 ? ALA A 22 VAL A 24 B 1 GLN A 139 ? PHE A 144 ? GLN A 135 PHE A 140 B 2 LYS A 147 ? ALA A 158 ? LYS A 143 ALA A 154 B 3 ILE A 96 ? PHE A 105 ? ILE A 92 PHE A 101 B 4 GLN A 186 ? LYS A 191 ? GLN A 182 LYS A 187 C 1 PRO A 115 ? ASP A 117 ? PRO A 111 ASP A 113 C 2 ASN A 198 ? ILE A 200 ? ASN A 194 ILE A 196 D 1 ALA A 133 ? SER A 135 ? ALA A 129 SER A 131 D 2 VAL A 178 ? LEU A 180 ? VAL A 174 LEU A 176 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 13 ? N ALA A 9 O VAL A 64 ? O VAL A 60 A 2 3 N VAL A 64 ? N VAL A 60 O GLN A 11 ? O GLN A 7 A 3 4 N MSE A 10 ? N MSE A 6 O ILE A 82 ? O ILE A 78 A 4 5 N TYR A 87 ? N TYR A 83 O HIS A 38 ? O HIS A 34 A 5 6 N THR A 43 ? N THR A 39 O HIS A 47 ? O HIS A 43 A 6 7 O THR A 52 ? O THR A 48 N ALA A 26 ? N ALA A 22 B 1 2 N PHE A 144 ? N PHE A 140 O LYS A 147 ? O LYS A 143 B 2 3 O GLU A 157 ? O GLU A 153 N GLY A 97 ? N GLY A 93 B 3 4 O GLY A 97 ? O GLY A 93 N GLN A 186 ? N GLN A 182 C 1 2 N TYR A 116 ? N TYR A 112 O ASN A 198 ? O ASN A 194 D 1 2 O PHE A 134 ? O PHE A 130 N GLY A 179 ? N GLY A 175 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 500' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 501' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLN A 80 ? GLN A 76 . ? 1_555 ? 2 AC1 6 GLU A 81 ? GLU A 77 . ? 1_555 ? 3 AC1 6 LYS A 91 ? LYS A 87 . ? 1_655 ? 4 AC1 6 ASN A 131 ? ASN A 127 . ? 1_655 ? 5 AC1 6 HOH E . ? HOH A 371 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH A 408 . ? 1_655 ? 7 AC2 3 THR A 17 ? THR A 13 . ? 1_555 ? 8 AC2 3 ARG A 54 ? ARG A 50 . ? 3_554 ? 9 AC2 3 HIS A 56 ? HIS A 52 . ? 1_555 ? 10 AC3 4 ARG A 14 ? ARG A 10 . ? 1_555 ? 11 AC3 4 CYS A 15 ? CYS A 11 . ? 1_555 ? 12 AC3 4 LEU A 68 ? LEU A 64 . ? 1_555 ? 13 AC3 4 ARG A 71 ? ARG A 67 . ? 1_555 ? # _database_PDB_matrix.entry_id 1QCS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1QCS _atom_sites.fract_transf_matrix[1][1] 0.031209 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005702 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012553 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 SER 2 -2 ? ? ? A . n A 1 3 HIS 3 -1 ? ? ? A . n A 1 4 ASN 4 0 0 ASN ASN A . n A 1 5 MSE 5 1 1 MSE MSE A . n A 1 6 ALA 6 2 2 ALA ALA A . n A 1 7 GLY 7 3 3 GLY GLY A . n A 1 8 ARG 8 4 4 ARG ARG A . n A 1 9 SER 9 5 5 SER SER A . n A 1 10 MSE 10 6 6 MSE MSE A . n A 1 11 GLN 11 7 7 GLN GLN A . n A 1 12 ALA 12 8 8 ALA ALA A . n A 1 13 ALA 13 9 9 ALA ALA A . n A 1 14 ARG 14 10 10 ARG ARG A . n A 1 15 CYS 15 11 11 CYS CYS A . n A 1 16 PRO 16 12 12 PRO PRO A . n A 1 17 THR 17 13 13 THR THR A . n A 1 18 ASP 18 14 14 ASP ASP A . n A 1 19 GLU 19 15 15 GLU GLU A . n A 1 20 LEU 20 16 16 LEU LEU A . n A 1 21 SER 21 17 17 SER SER A . n A 1 22 LEU 22 18 18 LEU LEU A . n A 1 23 SER 23 19 19 SER SER A . n A 1 24 ASN 24 20 20 ASN ASN A . n A 1 25 CYS 25 21 21 CYS CYS A . n A 1 26 ALA 26 22 22 ALA ALA A . n A 1 27 VAL 27 23 23 VAL VAL A . n A 1 28 VAL 28 24 24 VAL VAL A . n A 1 29 SER 29 25 25 SER SER A . n A 1 30 GLU 30 26 26 GLU GLU A . n A 1 31 LYS 31 27 27 LYS LYS A . n A 1 32 ASP 32 28 28 ASP ASP A . n A 1 33 TYR 33 29 29 TYR TYR A . n A 1 34 GLN 34 30 30 GLN GLN A . n A 1 35 SER 35 31 31 SER SER A . n A 1 36 GLY 36 32 32 GLY GLY A . n A 1 37 GLN 37 33 33 GLN GLN A . n A 1 38 HIS 38 34 34 HIS HIS A . n A 1 39 VAL 39 35 35 VAL VAL A . n A 1 40 ILE 40 36 36 ILE ILE A . n A 1 41 VAL 41 37 37 VAL VAL A . n A 1 42 ARG 42 38 38 ARG ARG A . n A 1 43 THR 43 39 39 THR THR A . n A 1 44 SER 44 40 40 SER SER A . n A 1 45 PRO 45 41 41 PRO PRO A . n A 1 46 ASN 46 42 42 ASN ASN A . n A 1 47 HIS 47 43 43 HIS HIS A . n A 1 48 LYS 48 44 44 LYS LYS A . n A 1 49 TYR 49 45 45 TYR TYR A . n A 1 50 ILE 50 46 46 ILE ILE A . n A 1 51 PHE 51 47 47 PHE PHE A . n A 1 52 THR 52 48 48 THR THR A . n A 1 53 LEU 53 49 49 LEU LEU A . n A 1 54 ARG 54 50 50 ARG ARG A . n A 1 55 THR 55 51 51 THR THR A . n A 1 56 HIS 56 52 52 HIS HIS A . n A 1 57 PRO 57 53 53 PRO PRO A . n A 1 58 SER 58 54 54 SER SER A . n A 1 59 VAL 59 55 55 VAL VAL A . n A 1 60 VAL 60 56 56 VAL VAL A . n A 1 61 PRO 61 57 57 PRO PRO A . n A 1 62 GLY 62 58 58 GLY GLY A . n A 1 63 SER 63 59 59 SER SER A . n A 1 64 VAL 64 60 60 VAL VAL A . n A 1 65 ALA 65 61 61 ALA ALA A . n A 1 66 PHE 66 62 62 PHE PHE A . n A 1 67 SER 67 63 63 SER SER A . n A 1 68 LEU 68 64 64 LEU LEU A . n A 1 69 PRO 69 65 65 PRO PRO A . n A 1 70 GLN 70 66 66 GLN GLN A . n A 1 71 ARG 71 67 67 ARG ARG A . n A 1 72 LYS 72 68 68 LYS LYS A . n A 1 73 TRP 73 69 69 TRP TRP A . n A 1 74 ALA 74 70 70 ALA ALA A . n A 1 75 GLY 75 71 71 GLY GLY A . n A 1 76 LEU 76 72 72 LEU LEU A . n A 1 77 SER 77 73 73 SER SER A . n A 1 78 ILE 78 74 74 ILE ILE A . n A 1 79 GLY 79 75 75 GLY GLY A . n A 1 80 GLN 80 76 76 GLN GLN A . n A 1 81 GLU 81 77 77 GLU GLU A . n A 1 82 ILE 82 78 78 ILE ILE A . n A 1 83 GLU 83 79 79 GLU GLU A . n A 1 84 VAL 84 80 80 VAL VAL A . n A 1 85 ALA 85 81 81 ALA ALA A . n A 1 86 LEU 86 82 82 LEU LEU A . n A 1 87 TYR 87 83 83 TYR TYR A . n A 1 88 SER 88 84 84 SER SER A . n A 1 89 PHE 89 85 85 PHE PHE A . n A 1 90 ASP 90 86 86 ASP ASP A . n A 1 91 LYS 91 87 87 LYS LYS A . n A 1 92 ALA 92 88 88 ALA ALA A . n A 1 93 LYS 93 89 89 LYS LYS A . n A 1 94 GLN 94 90 90 GLN GLN A . n A 1 95 CYS 95 91 91 CYS CYS A . n A 1 96 ILE 96 92 92 ILE ILE A . n A 1 97 GLY 97 93 93 GLY GLY A . n A 1 98 THR 98 94 94 THR THR A . n A 1 99 MSE 99 95 95 MSE MSE A . n A 1 100 THR 100 96 96 THR THR A . n A 1 101 ILE 101 97 97 ILE ILE A . n A 1 102 GLU 102 98 98 GLU GLU A . n A 1 103 ILE 103 99 99 ILE ILE A . n A 1 104 ASP 104 100 100 ASP ASP A . n A 1 105 PHE 105 101 101 PHE PHE A . n A 1 106 LEU 106 102 102 LEU LEU A . n A 1 107 GLN 107 103 103 GLN GLN A . n A 1 108 LYS 108 104 104 LYS LYS A . n A 1 109 LYS 109 105 105 LYS LYS A . n A 1 110 ASN 110 106 106 ASN ASN A . n A 1 111 ILE 111 107 107 ILE ILE A . n A 1 112 ASP 112 108 108 ASP ASP A . n A 1 113 SER 113 109 109 SER SER A . n A 1 114 ASN 114 110 110 ASN ASN A . n A 1 115 PRO 115 111 111 PRO PRO A . n A 1 116 TYR 116 112 112 TYR TYR A . n A 1 117 ASP 117 113 113 ASP ASP A . n A 1 118 THR 118 114 114 THR THR A . n A 1 119 ASP 119 115 115 ASP ASP A . n A 1 120 LYS 120 116 116 LYS LYS A . n A 1 121 MSE 121 117 117 MSE MSE A . n A 1 122 ALA 122 118 118 ALA ALA A . n A 1 123 ALA 123 119 119 ALA ALA A . n A 1 124 GLU 124 120 120 GLU GLU A . n A 1 125 PHE 125 121 121 PHE PHE A . n A 1 126 ILE 126 122 122 ILE ILE A . n A 1 127 GLN 127 123 123 GLN GLN A . n A 1 128 GLN 128 124 124 GLN GLN A . n A 1 129 PHE 129 125 125 PHE PHE A . n A 1 130 ASN 130 126 126 ASN ASN A . n A 1 131 ASN 131 127 127 ASN ASN A . n A 1 132 GLN 132 128 128 GLN GLN A . n A 1 133 ALA 133 129 129 ALA ALA A . n A 1 134 PHE 134 130 130 PHE PHE A . n A 1 135 SER 135 131 131 SER SER A . n A 1 136 VAL 136 132 132 VAL VAL A . n A 1 137 GLY 137 133 133 GLY GLY A . n A 1 138 GLN 138 134 134 GLN GLN A . n A 1 139 GLN 139 135 135 GLN GLN A . n A 1 140 LEU 140 136 136 LEU LEU A . n A 1 141 VAL 141 137 137 VAL VAL A . n A 1 142 PHE 142 138 138 PHE PHE A . n A 1 143 SER 143 139 139 SER SER A . n A 1 144 PHE 144 140 140 PHE PHE A . n A 1 145 ASN 145 141 141 ASN ASN A . n A 1 146 ASP 146 142 142 ASP ASP A . n A 1 147 LYS 147 143 143 LYS LYS A . n A 1 148 LEU 148 144 144 LEU LEU A . n A 1 149 PHE 149 145 145 PHE PHE A . n A 1 150 GLY 150 146 146 GLY GLY A . n A 1 151 LEU 151 147 147 LEU LEU A . n A 1 152 LEU 152 148 148 LEU LEU A . n A 1 153 VAL 153 149 149 VAL VAL A . n A 1 154 LYS 154 150 150 LYS LYS A . n A 1 155 ASP 155 151 151 ASP ASP A . n A 1 156 ILE 156 152 152 ILE ILE A . n A 1 157 GLU 157 153 153 GLU GLU A . n A 1 158 ALA 158 154 154 ALA ALA A . n A 1 159 MSE 159 155 155 MSE MSE A . n A 1 160 ASP 160 156 156 ASP ASP A . n A 1 161 PRO 161 157 157 PRO PRO A . n A 1 162 SER 162 158 158 SER SER A . n A 1 163 ILE 163 159 159 ILE ILE A . n A 1 164 LEU 164 160 160 LEU LEU A . n A 1 165 LYS 165 161 161 LYS LYS A . n A 1 166 GLY 166 162 ? ? ? A . n A 1 167 GLU 167 163 ? ? ? A . n A 1 168 PRO 168 164 ? ? ? A . n A 1 169 ALA 169 165 ? ? ? A . n A 1 170 SER 170 166 ? ? ? A . n A 1 171 GLY 171 167 ? ? ? A . n A 1 172 LYS 172 168 ? ? ? A . n A 1 173 ARG 173 169 169 ARG ARG A . n A 1 174 GLN 174 170 170 GLN GLN A . n A 1 175 LYS 175 171 171 LYS LYS A . n A 1 176 ILE 176 172 172 ILE ILE A . n A 1 177 GLU 177 173 173 GLU GLU A . n A 1 178 VAL 178 174 174 VAL VAL A . n A 1 179 GLY 179 175 175 GLY GLY A . n A 1 180 LEU 180 176 176 LEU LEU A . n A 1 181 VAL 181 177 177 VAL VAL A . n A 1 182 VAL 182 178 178 VAL VAL A . n A 1 183 GLY 183 179 179 GLY GLY A . n A 1 184 ASN 184 180 180 ASN ASN A . n A 1 185 SER 185 181 181 SER SER A . n A 1 186 GLN 186 182 182 GLN GLN A . n A 1 187 VAL 187 183 183 VAL VAL A . n A 1 188 ALA 188 184 184 ALA ALA A . n A 1 189 PHE 189 185 185 PHE PHE A . n A 1 190 GLU 190 186 186 GLU GLU A . n A 1 191 LYS 191 187 187 LYS LYS A . n A 1 192 ALA 192 188 188 ALA ALA A . n A 1 193 GLU 193 189 189 GLU GLU A . n A 1 194 ASN 194 190 190 ASN ASN A . n A 1 195 SER 195 191 191 SER SER A . n A 1 196 SER 196 192 192 SER SER A . n A 1 197 LEU 197 193 193 LEU LEU A . n A 1 198 ASN 198 194 194 ASN ASN A . n A 1 199 LEU 199 195 195 LEU LEU A . n A 1 200 ILE 200 196 196 ILE ILE A . n A 1 201 GLY 201 197 197 GLY GLY A . n A 1 202 LYS 202 198 198 LYS LYS A . n A 1 203 ALA 203 199 199 ALA ALA A . n A 1 204 LYS 204 200 200 LYS LYS A . n A 1 205 THR 205 201 201 THR THR A . n A 1 206 LYS 206 202 ? ? ? A . n A 1 207 GLU 207 203 ? ? ? A . n A 1 208 ASN 208 204 ? ? ? A . n A 1 209 ARG 209 205 ? ? ? A . n A 1 210 LEU 210 206 ? ? ? A . n A 1 211 GLU 211 207 ? ? ? A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 5 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 10 A MSE 6 ? MET SELENOMETHIONINE 3 A MSE 99 A MSE 95 ? MET SELENOMETHIONINE 4 A MSE 121 A MSE 117 ? MET SELENOMETHIONINE 5 A MSE 159 A MSE 155 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-05-18 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 ADSC 'data collection' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 67 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 67 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 67 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.91 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.39 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 127 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 70.13 _pdbx_validate_torsion.psi 31.72 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A SER -2 ? A SER 2 3 1 Y 1 A HIS -1 ? A HIS 3 4 1 Y 1 A GLY 162 ? A GLY 166 5 1 Y 1 A GLU 163 ? A GLU 167 6 1 Y 1 A PRO 164 ? A PRO 168 7 1 Y 1 A ALA 165 ? A ALA 169 8 1 Y 1 A SER 166 ? A SER 170 9 1 Y 1 A GLY 167 ? A GLY 171 10 1 Y 1 A LYS 168 ? A LYS 172 11 1 Y 1 A LYS 202 ? A LYS 206 12 1 Y 1 A GLU 203 ? A GLU 207 13 1 Y 1 A ASN 204 ? A ASN 208 14 1 Y 1 A ARG 205 ? A ARG 209 15 1 Y 1 A LEU 206 ? A LEU 210 16 1 Y 1 A GLU 207 ? A GLU 211 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 500 300 SO4 SO4 A . C 2 SO4 1 501 301 SO4 SO4 A . D 2 SO4 1 502 302 SO4 SO4 A . E 3 HOH 1 300 300 HOH TIP A . E 3 HOH 2 301 301 HOH TIP A . E 3 HOH 3 302 302 HOH TIP A . E 3 HOH 4 303 303 HOH TIP A . E 3 HOH 5 304 304 HOH TIP A . E 3 HOH 6 305 305 HOH TIP A . E 3 HOH 7 306 306 HOH TIP A . E 3 HOH 8 307 307 HOH TIP A . E 3 HOH 9 308 308 HOH TIP A . E 3 HOH 10 309 309 HOH TIP A . E 3 HOH 11 310 310 HOH TIP A . E 3 HOH 12 311 311 HOH TIP A . E 3 HOH 13 312 312 HOH TIP A . E 3 HOH 14 313 313 HOH TIP A . E 3 HOH 15 314 314 HOH TIP A . E 3 HOH 16 315 315 HOH TIP A . E 3 HOH 17 316 316 HOH TIP A . E 3 HOH 18 317 317 HOH TIP A . E 3 HOH 19 318 318 HOH TIP A . E 3 HOH 20 319 319 HOH TIP A . E 3 HOH 21 320 320 HOH TIP A . E 3 HOH 22 321 321 HOH TIP A . E 3 HOH 23 322 322 HOH TIP A . E 3 HOH 24 323 323 HOH TIP A . E 3 HOH 25 324 324 HOH TIP A . E 3 HOH 26 325 325 HOH TIP A . E 3 HOH 27 326 326 HOH TIP A . E 3 HOH 28 327 327 HOH TIP A . E 3 HOH 29 328 328 HOH TIP A . E 3 HOH 30 329 329 HOH TIP A . E 3 HOH 31 330 330 HOH TIP A . E 3 HOH 32 331 331 HOH TIP A . E 3 HOH 33 332 332 HOH TIP A . E 3 HOH 34 333 333 HOH TIP A . E 3 HOH 35 334 334 HOH TIP A . E 3 HOH 36 335 335 HOH TIP A . E 3 HOH 37 336 336 HOH TIP A . E 3 HOH 38 337 337 HOH TIP A . E 3 HOH 39 338 338 HOH TIP A . E 3 HOH 40 339 339 HOH TIP A . E 3 HOH 41 340 340 HOH TIP A . E 3 HOH 42 341 341 HOH TIP A . E 3 HOH 43 342 342 HOH TIP A . E 3 HOH 44 343 343 HOH TIP A . E 3 HOH 45 344 344 HOH TIP A . E 3 HOH 46 345 345 HOH TIP A . E 3 HOH 47 346 346 HOH TIP A . E 3 HOH 48 347 347 HOH TIP A . E 3 HOH 49 348 348 HOH TIP A . E 3 HOH 50 349 349 HOH TIP A . E 3 HOH 51 350 350 HOH TIP A . E 3 HOH 52 351 351 HOH TIP A . E 3 HOH 53 352 352 HOH TIP A . E 3 HOH 54 353 353 HOH TIP A . E 3 HOH 55 354 354 HOH TIP A . E 3 HOH 56 355 355 HOH TIP A . E 3 HOH 57 356 356 HOH TIP A . E 3 HOH 58 357 357 HOH TIP A . E 3 HOH 59 358 358 HOH TIP A . E 3 HOH 60 359 359 HOH TIP A . E 3 HOH 61 360 360 HOH TIP A . E 3 HOH 62 361 361 HOH TIP A . E 3 HOH 63 362 362 HOH TIP A . E 3 HOH 64 363 363 HOH TIP A . E 3 HOH 65 364 364 HOH TIP A . E 3 HOH 66 365 365 HOH TIP A . E 3 HOH 67 366 366 HOH TIP A . E 3 HOH 68 367 367 HOH TIP A . E 3 HOH 69 369 369 HOH TIP A . E 3 HOH 70 370 370 HOH TIP A . E 3 HOH 71 371 371 HOH TIP A . E 3 HOH 72 372 372 HOH TIP A . E 3 HOH 73 373 373 HOH TIP A . E 3 HOH 74 374 374 HOH TIP A . E 3 HOH 75 375 375 HOH TIP A . E 3 HOH 76 376 376 HOH TIP A . E 3 HOH 77 377 377 HOH TIP A . E 3 HOH 78 378 378 HOH TIP A . E 3 HOH 79 379 379 HOH TIP A . E 3 HOH 80 380 380 HOH TIP A . E 3 HOH 81 381 381 HOH TIP A . E 3 HOH 82 382 382 HOH TIP A . E 3 HOH 83 383 383 HOH TIP A . E 3 HOH 84 384 384 HOH TIP A . E 3 HOH 85 385 385 HOH TIP A . E 3 HOH 86 386 386 HOH TIP A . E 3 HOH 87 387 387 HOH TIP A . E 3 HOH 88 388 388 HOH TIP A . E 3 HOH 89 389 389 HOH TIP A . E 3 HOH 90 390 390 HOH TIP A . E 3 HOH 91 391 391 HOH TIP A . E 3 HOH 92 392 392 HOH TIP A . E 3 HOH 93 393 393 HOH TIP A . E 3 HOH 94 394 394 HOH TIP A . E 3 HOH 95 395 395 HOH TIP A . E 3 HOH 96 396 396 HOH TIP A . E 3 HOH 97 397 397 HOH TIP A . E 3 HOH 98 398 398 HOH TIP A . E 3 HOH 99 399 399 HOH TIP A . E 3 HOH 100 400 400 HOH TIP A . E 3 HOH 101 402 402 HOH TIP A . E 3 HOH 102 403 403 HOH TIP A . E 3 HOH 103 404 404 HOH TIP A . E 3 HOH 104 405 405 HOH TIP A . E 3 HOH 105 406 406 HOH TIP A . E 3 HOH 106 407 407 HOH TIP A . E 3 HOH 107 408 408 HOH TIP A . E 3 HOH 108 409 409 HOH TIP A . E 3 HOH 109 410 410 HOH TIP A . E 3 HOH 110 411 411 HOH TIP A . E 3 HOH 111 412 412 HOH TIP A . E 3 HOH 112 413 413 HOH TIP A . E 3 HOH 113 414 414 HOH TIP A . E 3 HOH 114 415 415 HOH TIP A . E 3 HOH 115 416 416 HOH TIP A . E 3 HOH 116 417 417 HOH TIP A . E 3 HOH 117 418 418 HOH TIP A . E 3 HOH 118 419 419 HOH TIP A . E 3 HOH 119 420 420 HOH TIP A . E 3 HOH 120 421 421 HOH TIP A . E 3 HOH 121 422 422 HOH TIP A . E 3 HOH 122 423 423 HOH TIP A . E 3 HOH 123 424 424 HOH TIP A . E 3 HOH 124 425 425 HOH TIP A . E 3 HOH 125 426 426 HOH TIP A . E 3 HOH 126 427 427 HOH TIP A . E 3 HOH 127 428 428 HOH TIP A . E 3 HOH 128 429 429 HOH TIP A . E 3 HOH 129 430 430 HOH TIP A . E 3 HOH 130 431 431 HOH TIP A . #