HEADER SUGAR BINDING PROTEIN 24-MAY-99 1QDO TITLE MAN(APLHA1-3)MAN(ALPHA1-O)METHYL CONCANAVALIN A COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (CONCANAVALIN A); COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CON A; COMPND 5 OTHER_DETAILS: CO-CRYSTALS OF CONCANAVALIN A WITH METHYL-3-O-(ALPHA- COMPND 6 D-MANNOPYRANOSYL)-ALPHA-D- MANNOPYRANOSIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANAVALIA ENSIFORMIS; SOURCE 3 ORGANISM_COMMON: JACK BEAN; SOURCE 4 ORGANISM_TAXID: 3823; SOURCE 5 OTHER_DETAILS: CANAVALIA ENSIFORMIS BEANS KEYWDS PLANT LECTIN, CARBOHYDRATE BINDING, DIMANNOSE, CONCANAVALIN A, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BOUCKAERT,R.LORIS,L.WYNS REVDAT 5 16-AUG-23 1QDO 1 HETSYN REVDAT 4 29-JUL-20 1QDO 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 24-FEB-09 1QDO 1 VERSN REVDAT 2 01-APR-03 1QDO 1 JRNL REVDAT 1 14-OCT-99 1QDO 0 JRNL AUTH J.BOUCKAERT,T.W.HAMELRYCK,L.WYNS,R.LORIS JRNL TITL THE CRYSTAL STRUCTURES OF MAN(ALPHA1-3)MAN(ALPHA1-O)ME AND JRNL TITL 2 MAN(ALPHA1-6)MAN(ALPHA1-O)ME IN COMPLEX WITH CONCANAVALIN A. JRNL REF J.BIOL.CHEM. V. 274 29188 1999 JRNL REFN ISSN 0021-9258 JRNL PMID 10506175 JRNL DOI 10.1074/JBC.274.41.29188 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.LORIS,D.MAES,F.POORTMANS,L.WYNS,J.BOUCKAERT REMARK 1 TITL CONCANAVALIN A CRYSTALLIZED IN COMPLEX WITH THE REMARK 1 TITL 2 TRISACCHARIDE REMARK 1 TITL 3 3,6-DI-O-(ALPHA-D-MANNOPYRANOSYL)-ALPHA-D-MANNOPYRANOSIDE REMARK 1 REF J.BIOL.CHEM. V. 271 30614 1996 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.271.48.30614 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.H.NAISMITH,R.A.FIELD REMARK 1 TITL STRUCTURAL BASIS OF TRIMANNOSIDE RECOGNITION BY CONCANAVALIN REMARK 1 TITL 2 A REMARK 1 REF J.BIOL.CHEM. V. 271 972 1996 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.271.2.972 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.K.MANDAL,N.KISHORE,C.F.BREWER REMARK 1 TITL THERMODYNAMICS OF LECTIN-CARBOHYDRATE INTERACTIONS. REMARK 1 TITL 2 TITRATION MICROCALORIMETRY MEASUREMENTS OF THE BINDING OF REMARK 1 TITL 3 N-LINKED CARBOHYDRATES AND OVALBUMIN TO CONCANAVALIN A REMARK 1 REF BIOCHEMISTRY V. 33 1149 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2169 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.93 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2701 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7236 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.826 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.39 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.699 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS WEIGHT-NCS=602 SIGB=2.5 REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : 2.5 ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NCS RESTRAINTS GROUPED B-FACTOR REMARK 3 REFINEMENT REMARK 4 REMARK 4 1QDO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-99. REMARK 100 THE DEPOSITION ID IS D_1000009109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-99 REMARK 200 TEMPERATURE (KELVIN) : 291.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24411 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.16800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.60300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ENQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROP: 5 MICROLITER 5 MG/ML CON A, 5 MM REMARK 280 SUGAR + 5 MICROLITER 14% PEG 8000, 35 MM POTASSIUM PHOSPHATE; REMARK 280 500 MICROLITER BOTTOM SOLUTION, PH 8.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.26500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS A TETRAMER, COMPOSED OF REMARK 300 IDENTICAL MONOMERS OF 237 AMINO ACIDS. REMARK 300 THE FOLLOWING RESIDUES ARE IN WEAK ELECTRON DENSITY: REMARK 300 FROM 118 TO 121 AND 205. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 9 65.51 -116.57 REMARK 500 SER A 21 23.58 -44.66 REMARK 500 VAL A 57 -62.16 -90.40 REMARK 500 ASN A 69 71.70 66.86 REMARK 500 SER A 168 72.60 40.52 REMARK 500 ASP A 203 -158.76 -87.55 REMARK 500 SER A 225 46.68 -83.66 REMARK 500 ARG A 228 -4.16 -53.75 REMARK 500 ASP A 235 -155.67 -114.28 REMARK 500 SER B 21 36.01 -68.36 REMARK 500 ASN B 69 33.89 75.86 REMARK 500 SER B 117 146.91 -30.91 REMARK 500 THR B 150 98.85 -60.62 REMARK 500 SER B 160 -178.88 -67.00 REMARK 500 SER B 168 49.78 33.79 REMARK 500 ASP B 203 -145.98 -79.00 REMARK 500 SER B 225 42.23 -99.62 REMARK 500 SER C 21 26.99 -57.25 REMARK 500 LYS C 30 16.62 59.12 REMARK 500 ASN C 69 60.92 62.74 REMARK 500 ASN C 104 61.41 -118.55 REMARK 500 ASP C 151 -24.76 75.81 REMARK 500 ASP C 203 -144.97 -103.48 REMARK 500 SER C 225 40.94 -69.52 REMARK 500 ARG C 228 -18.91 -45.44 REMARK 500 ASP C 235 -168.74 -129.04 REMARK 500 SER D 21 32.69 -80.40 REMARK 500 LYS D 30 8.36 57.03 REMARK 500 SER D 56 2.65 -65.13 REMARK 500 SER D 117 147.74 -33.77 REMARK 500 ASP D 203 -151.57 -101.99 REMARK 500 ARG D 228 -12.08 -48.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 54 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 240 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 10 OD2 77.6 REMARK 620 3 ASP A 19 OD1 156.0 79.8 REMARK 620 4 HIS A 24 NE2 100.6 73.3 80.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 241 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 40.6 REMARK 620 3 TYR A 12 O 70.9 94.8 REMARK 620 4 ASN A 14 OD1 157.8 141.7 87.4 REMARK 620 5 ASP A 19 OD2 77.8 51.7 75.8 92.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 242 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 8 OE2 REMARK 620 2 ASP B 10 OD2 93.8 REMARK 620 3 ASP B 19 OD1 171.8 91.0 REMARK 620 4 HIS B 24 NE2 103.5 82.9 83.6 REMARK 620 5 HOH B1242 O 91.8 166.8 84.9 84.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 243 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 ASP B 10 OD2 49.6 REMARK 620 3 TYR B 12 O 73.0 102.5 REMARK 620 4 ASP B 19 OD2 89.9 62.8 71.5 REMARK 620 5 HOH B1240 O 108.4 65.7 156.5 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 244 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 8 OE2 REMARK 620 2 ASP C 10 OD2 80.2 REMARK 620 3 ASP C 19 OD1 163.8 84.0 REMARK 620 4 HIS C 24 NE2 86.7 76.5 85.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 245 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 10 OD2 REMARK 620 2 ASP C 10 OD1 43.3 REMARK 620 3 TYR C 12 O 107.5 87.7 REMARK 620 4 ASN C 14 OD1 152.2 164.1 82.4 REMARK 620 5 ASP C 19 OD2 59.6 94.4 84.1 96.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 246 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 8 OE2 REMARK 620 2 ASP D 10 OD2 89.2 REMARK 620 3 ASP D 19 OD1 164.2 102.0 REMARK 620 4 HIS D 24 NE2 112.2 91.5 78.9 REMARK 620 5 HOH D3243 O 88.2 173.0 79.3 95.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 247 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 10 OD1 REMARK 620 2 ASP D 10 OD2 48.9 REMARK 620 3 TYR D 12 O 76.9 108.8 REMARK 620 4 ASP D 19 OD2 99.4 66.4 85.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QDC RELATED DB: PDB REMARK 900 MAN(APLHA1-6)MAN(ALPHA1-O)METHYL CONCANAVALIN A COMPLEX DBREF 1QDO A 1 237 UNP P55915 CONA_CANBR 1 237 DBREF 1QDO B 1 237 UNP P55915 CONA_CANBR 1 237 DBREF 1QDO C 1 237 UNP P55915 CONA_CANBR 1 237 DBREF 1QDO D 1 237 UNP P55915 CONA_CANBR 1 237 SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 A 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 A 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 A 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 A 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 A 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 A 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN SEQRES 1 B 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 B 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 B 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 B 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 B 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 B 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 B 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 B 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 B 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 B 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 B 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 B 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 B 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 B 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 B 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 B 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 B 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 B 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 B 237 ASP ALA ASN SEQRES 1 C 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 C 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 C 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 C 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 C 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 C 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 C 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 C 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 C 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 C 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 C 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 C 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 C 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 C 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 C 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 C 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 C 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 C 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 C 237 ASP ALA ASN SEQRES 1 D 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 D 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 D 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 D 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 D 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 D 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 D 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 D 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 D 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 D 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 D 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 D 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 D 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 D 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 D 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 D 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 D 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 D 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 D 237 ASP ALA ASN HET MMA E 1 13 HET MAN E 2 11 HET MMA F 1 13 HET MAN F 2 11 HET MMA G 1 13 HET MAN G 2 11 HET MMA H 1 13 HET MAN H 2 11 HET MN A 240 1 HET CA A 241 1 HET MN B 242 1 HET CA B 243 1 HET MN C 244 1 HET CA C 245 1 HET MN D 246 1 HET CA D 247 1 HETNAM MMA METHYL ALPHA-D-MANNOPYRANOSIDE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION HETSYN MMA O1-METHYL-MANNOSE; METHYL ALPHA-D-MANNOSIDE; METHYL D- HETSYN 2 MMA MANNOSIDE; METHYL MANNOSIDE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 5 MMA 4(C7 H14 O6) FORMUL 5 MAN 4(C6 H12 O6) FORMUL 9 MN 4(MN 2+) FORMUL 10 CA 4(CA 2+) FORMUL 17 HOH *33(H2 O) HELIX 1 1 THR A 15 ILE A 17 5 3 HELIX 2 2 LEU A 81 ASN A 83 5 3 HELIX 3 3 THR A 150 GLY A 152 5 3 HELIX 4 4 GLY A 227 LEU A 229 5 3 HELIX 5 5 THR B 15 ILE B 17 5 3 HELIX 6 6 LEU B 81 ASN B 83 5 3 HELIX 7 7 THR B 150 GLY B 152 5 3 HELIX 8 8 GLY B 227 LEU B 229 5 3 HELIX 9 9 THR C 15 ILE C 17 5 3 HELIX 10 10 LEU C 81 ASN C 83 5 3 HELIX 11 11 THR C 150 GLY C 152 5 3 HELIX 12 12 GLY C 227 LEU C 229 5 3 HELIX 13 13 THR D 15 ILE D 17 5 3 HELIX 14 14 LEU D 81 ASN D 83 5 3 HELIX 15 15 THR D 150 GLY D 152 5 3 HELIX 16 16 GLY D 227 LEU D 229 5 3 SHEET 1 A 7 LYS A 36 LYS A 39 0 SHEET 2 A 7 HIS A 24 ILE A 29 -1 N ILE A 27 O LYS A 36 SHEET 3 A 7 ILE A 4 ASP A 10 -1 N ASP A 10 O HIS A 24 SHEET 4 A 7 GLY A 209 ASN A 216 -1 N ILE A 214 O VAL A 5 SHEET 5 A 7 VAL A 89 SER A 96 -1 N SER A 96 O GLY A 209 SHEET 6 A 7 VAL A 170 PHE A 175 -1 N ALA A 173 O LEU A 93 SHEET 7 A 7 LEU A 140 GLY A 144 -1 N GLN A 143 O ARG A 172 SHEET 1 B 6 ALA A 73 ASP A 78 0 SHEET 2 B 6 ARG A 60 TYR A 67 -1 N VAL A 65 O ALA A 73 SHEET 3 B 6 VAL A 47 ASN A 55 -1 N ILE A 53 O SER A 62 SHEET 4 B 6 VAL A 188 LEU A 198 -1 N PHE A 197 O GLY A 48 SHEET 5 B 6 THR A 105 LYS A 116 -1 N LYS A 116 O VAL A 188 SHEET 6 B 6 THR A 123 PHE A 130 -1 N PHE A 130 O TRP A 109 SHEET 1 C 7 LYS B 36 LYS B 39 0 SHEET 2 C 7 HIS B 24 ILE B 29 -1 N ILE B 27 O LYS B 36 SHEET 3 C 7 ILE B 4 ASP B 10 -1 N ASP B 10 O HIS B 24 SHEET 4 C 7 GLY B 209 ASN B 216 -1 N ILE B 214 O VAL B 5 SHEET 5 C 7 VAL B 89 SER B 96 -1 N SER B 96 O GLY B 209 SHEET 6 C 7 VAL B 170 PHE B 175 -1 N ALA B 173 O LEU B 93 SHEET 7 C 7 LEU B 140 GLY B 144 -1 N GLN B 143 O ARG B 172 SHEET 1 D 6 ALA B 73 ASP B 78 0 SHEET 2 D 6 ARG B 60 TYR B 67 -1 N VAL B 65 O ALA B 73 SHEET 3 D 6 VAL B 47 ASN B 55 -1 N ILE B 53 O SER B 62 SHEET 4 D 6 VAL B 188 LEU B 198 -1 N PHE B 197 O GLY B 48 SHEET 5 D 6 THR B 105 LYS B 116 -1 N LYS B 116 O VAL B 188 SHEET 6 D 6 THR B 123 PHE B 130 -1 N PHE B 130 O TRP B 109 SHEET 1 E 7 LYS C 36 LYS C 39 0 SHEET 2 E 7 HIS C 24 ILE C 29 -1 N ILE C 27 O LYS C 36 SHEET 3 E 7 ILE C 4 ASP C 10 -1 N ASP C 10 O HIS C 24 SHEET 4 E 7 GLY C 209 ASN C 216 -1 N ILE C 214 O VAL C 5 SHEET 5 E 7 VAL C 89 SER C 96 -1 N SER C 96 O GLY C 209 SHEET 6 E 7 VAL C 170 PHE C 175 -1 N ALA C 173 O LEU C 93 SHEET 7 E 7 LEU C 140 GLY C 144 -1 N GLN C 143 O ARG C 172 SHEET 1 F 6 ALA C 73 ASP C 78 0 SHEET 2 F 6 ARG C 60 TYR C 67 -1 N VAL C 65 O ALA C 73 SHEET 3 F 6 VAL C 47 ASN C 55 -1 N ILE C 53 O SER C 62 SHEET 4 F 6 VAL C 188 LEU C 198 -1 N PHE C 197 O GLY C 48 SHEET 5 F 6 THR C 105 LYS C 116 -1 N LYS C 116 O VAL C 188 SHEET 6 F 6 THR C 123 PHE C 130 -1 N PHE C 130 O TRP C 109 SHEET 1 G 7 LYS D 36 LYS D 39 0 SHEET 2 G 7 HIS D 24 ILE D 29 -1 N ILE D 27 O LYS D 36 SHEET 3 G 7 ILE D 4 ASP D 10 -1 N ASP D 10 O HIS D 24 SHEET 4 G 7 GLY D 209 ASN D 216 -1 N ILE D 214 O VAL D 5 SHEET 5 G 7 VAL D 89 SER D 96 -1 N SER D 96 O GLY D 209 SHEET 6 G 7 VAL D 170 PHE D 175 -1 N ALA D 173 O LEU D 93 SHEET 7 G 7 LEU D 140 GLY D 144 -1 N GLN D 143 O ARG D 172 SHEET 1 H 6 ALA D 73 ASP D 78 0 SHEET 2 H 6 ARG D 60 TYR D 67 -1 N VAL D 65 O ALA D 73 SHEET 3 H 6 VAL D 47 ASN D 55 -1 N ILE D 53 O SER D 62 SHEET 4 H 6 VAL D 188 LEU D 198 -1 N PHE D 197 O GLY D 48 SHEET 5 H 6 THR D 105 LYS D 116 -1 N LYS D 116 O VAL D 188 SHEET 6 H 6 THR D 123 PHE D 130 -1 N PHE D 130 O TRP D 109 LINK O3 MMA E 1 C1 MAN E 2 1555 1555 1.42 LINK O3 MMA F 1 C1 MAN F 2 1555 1555 1.42 LINK O3 MMA G 1 C1 MAN G 2 1555 1555 1.41 LINK O3 MMA H 1 C1 MAN H 2 1555 1555 1.41 LINK OE2 GLU A 8 MN MN A 240 1555 1555 1.95 LINK OD2 ASP A 10 MN MN A 240 1555 1555 2.15 LINK OD1 ASP A 10 CA CA A 241 1555 1555 2.54 LINK OD2 ASP A 10 CA CA A 241 1555 1555 3.40 LINK O TYR A 12 CA CA A 241 1555 1555 2.20 LINK OD1 ASN A 14 CA CA A 241 1555 1555 2.96 LINK OD1 ASP A 19 MN MN A 240 1555 1555 2.16 LINK OD2 ASP A 19 CA CA A 241 1555 1555 2.66 LINK NE2 HIS A 24 MN MN A 240 1555 1555 2.63 LINK OE2 GLU B 8 MN MN B 242 1555 1555 2.03 LINK OD2 ASP B 10 MN MN B 242 1555 1555 2.05 LINK OD1 ASP B 10 CA CA B 243 1555 1555 2.43 LINK OD2 ASP B 10 CA CA B 243 1555 1555 2.80 LINK O TYR B 12 CA CA B 243 1555 1555 2.30 LINK OD1 ASP B 19 MN MN B 242 1555 1555 2.21 LINK OD2 ASP B 19 CA CA B 243 1555 1555 2.64 LINK NE2 HIS B 24 MN MN B 242 1555 1555 2.50 LINK MN MN B 242 O HOH B1242 1555 1555 2.12 LINK CA CA B 243 O HOH B1240 1555 1555 2.35 LINK OE2 GLU C 8 MN MN C 244 1555 1555 1.84 LINK OD2 ASP C 10 MN MN C 244 1555 1555 2.04 LINK OD2 ASP C 10 CA CA C 245 1555 1555 3.26 LINK OD1 ASP C 10 CA CA C 245 1555 1555 2.16 LINK O TYR C 12 CA CA C 245 1555 1555 2.22 LINK OD1 ASN C 14 CA CA C 245 1555 1555 2.91 LINK OD1 ASP C 19 MN MN C 244 1555 1555 2.05 LINK OD2 ASP C 19 CA CA C 245 1555 1555 2.41 LINK NE2 HIS C 24 MN MN C 244 1555 1555 2.52 LINK OE2 GLU D 8 MN MN D 246 1555 1555 2.09 LINK OD2 ASP D 10 MN MN D 246 1555 1555 1.87 LINK OD1 ASP D 10 CA CA D 247 1555 1555 2.06 LINK OD2 ASP D 10 CA CA D 247 1555 1555 2.95 LINK O TYR D 12 CA CA D 247 1555 1555 2.40 LINK OD1 ASP D 19 MN MN D 246 1555 1555 2.06 LINK OD2 ASP D 19 CA CA D 247 1555 1555 2.68 LINK NE2 HIS D 24 MN MN D 246 1555 1555 2.62 LINK MN MN D 246 O HOH D3243 1555 1555 1.75 CISPEP 1 ALA A 207 ASP A 208 0 0.41 CISPEP 2 ALA B 207 ASP B 208 0 0.47 CISPEP 3 ALA C 207 ASP C 208 0 0.24 CISPEP 4 ALA D 207 ASP D 208 0 0.17 CRYST1 60.410 64.530 126.960 90.00 93.21 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016554 0.000000 0.000928 0.00000 SCALE2 0.000000 0.015497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007889 0.00000