HEADER LIGASE 12-JUL-99 1QE0 TITLE CRYSTAL STRUCTURE OF APO S. AUREUS HISTIDYL-TRNA SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE--TRNA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HISTIDYL-TRNA SYNTHETASE,HISRS; COMPND 5 EC: 6.1.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: HISS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDB575 KEYWDS CLASS II TRNA SYNTHETASE, BETA SHEET, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR X.QIU,C.A.JANSON,M.N.BLACKBURN,I.K.CHOHAN,M.HIBBS,S.S.ABDEL-MEGUID REVDAT 5 28-JUN-17 1QE0 1 DBREF REVDAT 4 24-FEB-09 1QE0 1 VERSN REVDAT 3 01-APR-03 1QE0 1 JRNL REVDAT 2 26-SEP-01 1QE0 3 ATOM REVDAT 1 12-JUL-00 1QE0 0 JRNL AUTH X.QIU,C.A.JANSON,M.N.BLACKBURN,I.K.CHHOHAN,M.HIBBS, JRNL AUTH 2 S.S.ABDEL-MEGUID JRNL TITL COOPERATIVE STRUCTURAL DYNAMICS AND A NOVEL FIDELITY JRNL TITL 2 MECHANISM IN HISTIDYL-TRNA SYNTHETASES. JRNL REF BIOCHEMISTRY V. 38 12296 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10493797 JRNL DOI 10.1021/BI990482V REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 70.0 REMARK 3 NUMBER OF REFLECTIONS : 19332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : 5% OF OBSERVED REFLECTIONS REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1010 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5896 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THERE IS A PSEUDO 1/2 TRANSLATION ALONG Z, CAUSING NEARLY HALF OF REMARK 3 THE REMARK 3 REFLECTIONS BEING NEAR ZERO INTENSITY AND MEASURED AT NOISE LEVEL. REMARK 3 R(ALL) IS NOT CALCULATED SINCE IT WOULD BE HORRIBLE. REMARK 4 REMARK 4 1QE0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-99. REMARK 100 THE DEPOSITION ID IS D_1000009328. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT, SMART REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28925 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 31.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.19400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.56400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CITRATE, TARTRATE, (NH4)2SO4, PH 5.6, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.32667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.66333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.99500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.33167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 96.65833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 52 REMARK 465 VAL A 53 REMARK 465 GLY A 54 REMARK 465 ASP A 55 REMARK 465 SER A 56 REMARK 465 THR A 57 REMARK 465 ASP A 58 REMARK 465 VAL A 59 REMARK 465 VAL A 60 REMARK 465 GLN A 61 REMARK 465 LYS A 62 REMARK 465 GLU A 114 REMARK 465 ARG A 115 REMARK 465 LYS A 116 REMARK 465 GLN A 117 REMARK 465 LYS A 118 REMARK 465 GLY A 119 REMARK 465 ARG A 120 REMARK 465 ASP A 207 REMARK 465 CYS A 208 REMARK 465 LYS A 209 REMARK 465 VAL A 210 REMARK 465 ASP A 211 REMARK 465 ARG A 212 REMARK 465 ASP A 213 REMARK 465 LYS A 214 REMARK 465 GLU A 215 REMARK 465 ALA A 216 REMARK 465 ILE A 217 REMARK 465 LYS A 218 REMARK 465 GLY B 52 REMARK 465 VAL B 53 REMARK 465 GLY B 54 REMARK 465 ASP B 55 REMARK 465 SER B 56 REMARK 465 THR B 57 REMARK 465 ASP B 58 REMARK 465 VAL B 59 REMARK 465 VAL B 60 REMARK 465 GLN B 61 REMARK 465 LYS B 62 REMARK 465 GLU B 114 REMARK 465 ARG B 115 REMARK 465 LYS B 116 REMARK 465 GLN B 117 REMARK 465 LYS B 118 REMARK 465 GLY B 119 REMARK 465 ARG B 120 REMARK 465 ARG B 172 REMARK 465 LYS B 173 REMARK 465 GLU B 174 REMARK 465 TYR B 175 REMARK 465 ASN B 176 REMARK 465 GLU B 177 REMARK 465 ALA B 178 REMARK 465 LEU B 179 REMARK 465 VAL B 180 REMARK 465 LYS B 181 REMARK 465 HIS B 182 REMARK 465 PHE B 183 REMARK 465 GLU B 184 REMARK 465 PRO B 185 REMARK 465 VAL B 186 REMARK 465 ILE B 187 REMARK 465 HIS B 188 REMARK 465 GLU B 189 REMARK 465 PHE B 190 REMARK 465 CYS B 191 REMARK 465 SER B 192 REMARK 465 ASP B 193 REMARK 465 CYS B 194 REMARK 465 GLN B 195 REMARK 465 SER B 196 REMARK 465 ARG B 197 REMARK 465 LEU B 198 REMARK 465 HIS B 199 REMARK 465 THR B 200 REMARK 465 ASP B 201 REMARK 465 PRO B 202 REMARK 465 MET B 203 REMARK 465 ARG B 204 REMARK 465 ILE B 205 REMARK 465 LEU B 206 REMARK 465 ASP B 207 REMARK 465 CYS B 208 REMARK 465 LYS B 209 REMARK 465 VAL B 210 REMARK 465 ASP B 211 REMARK 465 ARG B 212 REMARK 465 ASP B 213 REMARK 465 LYS B 214 REMARK 465 GLU B 215 REMARK 465 ALA B 216 REMARK 465 ILE B 217 REMARK 465 LYS B 218 REMARK 465 THR B 219 REMARK 465 ALA B 220 REMARK 465 PRO B 221 REMARK 465 ARG B 222 REMARK 465 ILE B 223 REMARK 465 THR B 224 REMARK 465 ASP B 225 REMARK 465 PHE B 226 REMARK 465 LEU B 227 REMARK 465 ASN B 228 REMARK 465 GLU B 229 REMARK 465 GLU B 230 REMARK 465 LYS B 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 GLU A 323 CG CD OE1 OE2 REMARK 470 LYS B 232 CG CD CE NZ REMARK 470 GLU B 323 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 274 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 PRO A 299 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 LEU A 308 CA - CB - CG ANGL. DEV. = 18.5 DEGREES REMARK 500 PRO B 274 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 PRO B 299 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 LEU B 308 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 13 -26.34 -38.84 REMARK 500 ASN A 34 33.66 75.59 REMARK 500 ASP A 47 -8.06 -59.83 REMARK 500 LYS A 68 57.21 -69.36 REMARK 500 ASP A 69 -152.54 -99.12 REMARK 500 ASP A 72 -7.74 67.74 REMARK 500 ASN A 107 111.28 -169.72 REMARK 500 ALA A 134 72.50 -168.00 REMARK 500 HIS A 158 48.93 -102.79 REMARK 500 HIS A 182 -78.60 -63.79 REMARK 500 VAL A 186 26.42 -141.89 REMARK 500 ASP A 193 -78.72 -54.67 REMARK 500 ASP A 201 92.33 -173.72 REMARK 500 PRO A 221 152.10 -48.22 REMARK 500 THR A 224 1.88 -65.02 REMARK 500 ASN A 228 -150.44 -78.77 REMARK 500 ASP A 260 -5.95 -56.27 REMARK 500 HIS A 264 -124.18 30.27 REMARK 500 ASP A 277 98.39 -64.86 REMARK 500 ALA A 279 -19.19 68.26 REMARK 500 PRO A 299 172.62 -54.92 REMARK 500 ASP A 325 54.26 -68.17 REMARK 500 GLU A 328 67.82 5.18 REMARK 500 LYS A 361 -168.88 -121.62 REMARK 500 LEU A 364 -6.21 62.33 REMARK 500 GLN A 365 83.73 34.09 REMARK 500 ALA A 380 109.59 -50.05 REMARK 500 ASN B 34 35.76 75.76 REMARK 500 ASP B 69 -151.29 -98.34 REMARK 500 ASP B 72 -4.16 60.07 REMARK 500 ASN B 107 113.12 -163.98 REMARK 500 ALA B 134 75.93 -170.28 REMARK 500 HIS B 158 48.90 -101.88 REMARK 500 LYS B 160 96.02 -160.42 REMARK 500 ASP B 260 -6.22 -57.90 REMARK 500 THR B 263 -73.66 -60.51 REMARK 500 HIS B 264 -99.66 -105.69 REMARK 500 PRO B 299 170.27 -54.73 REMARK 500 ILE B 326 -97.59 -86.89 REMARK 500 GLU B 327 83.76 48.35 REMARK 500 LYS B 361 -164.77 -122.13 REMARK 500 LEU B 364 -4.49 60.37 REMARK 500 GLN B 365 84.52 36.18 REMARK 500 LEU B 414 -64.27 -22.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 33 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1QE0 A 1 420 UNP P60911 SYH_STAAU 1 420 DBREF 1QE0 B 1 420 UNP P60911 SYH_STAAU 1 420 SEQADV 1QE0 ASP A 201 UNP P60911 ASN 201 CONFLICT SEQADV 1QE0 THR A 250 UNP P60911 ILE 250 CONFLICT SEQADV 1QE0 ASP B 201 UNP P60911 ASN 201 CONFLICT SEQADV 1QE0 THR B 250 UNP P60911 ILE 250 CONFLICT SEQRES 1 A 420 MET ILE LYS ILE PRO ARG GLY THR GLN ASP ILE LEU PRO SEQRES 2 A 420 GLU ASP SER LYS LYS TRP ARG TYR ILE GLU ASN GLN LEU SEQRES 3 A 420 ASP GLU LEU MET THR PHE TYR ASN TYR LYS GLU ILE ARG SEQRES 4 A 420 THR PRO ILE PHE GLU SER THR ASP LEU PHE ALA ARG GLY SEQRES 5 A 420 VAL GLY ASP SER THR ASP VAL VAL GLN LYS GLU MET TYR SEQRES 6 A 420 THR PHE LYS ASP LYS GLY ASP ARG SER ILE THR LEU ARG SEQRES 7 A 420 PRO GLU GLY THR ALA ALA VAL VAL ARG SER TYR ILE GLU SEQRES 8 A 420 HIS LYS MET GLN GLY ASN PRO ASN GLN PRO ILE LYS LEU SEQRES 9 A 420 TYR TYR ASN GLY PRO MET PHE ARG TYR GLU ARG LYS GLN SEQRES 10 A 420 LYS GLY ARG TYR ARG GLN PHE ASN GLN PHE GLY VAL GLU SEQRES 11 A 420 ALA ILE GLY ALA GLU ASN PRO SER VAL ASP ALA GLU VAL SEQRES 12 A 420 LEU ALA MET VAL MET HIS ILE TYR GLN SER PHE GLY LEU SEQRES 13 A 420 LYS HIS LEU LYS LEU VAL ILE ASN SER VAL GLY ASP MET SEQRES 14 A 420 ALA SER ARG LYS GLU TYR ASN GLU ALA LEU VAL LYS HIS SEQRES 15 A 420 PHE GLU PRO VAL ILE HIS GLU PHE CYS SER ASP CYS GLN SEQRES 16 A 420 SER ARG LEU HIS THR ASP PRO MET ARG ILE LEU ASP CYS SEQRES 17 A 420 LYS VAL ASP ARG ASP LYS GLU ALA ILE LYS THR ALA PRO SEQRES 18 A 420 ARG ILE THR ASP PHE LEU ASN GLU GLU SER LYS ALA TYR SEQRES 19 A 420 TYR GLU GLN VAL LYS ALA TYR LEU ASP ASP LEU GLY ILE SEQRES 20 A 420 PRO TYR THR GLU ASP PRO ASN LEU VAL ARG GLY LEU ASP SEQRES 21 A 420 TYR TYR THR HIS THR ALA PHE GLU LEU MET MET ASP ASN SEQRES 22 A 420 PRO ASN TYR ASP GLY ALA ILE THR THR LEU CYS GLY GLY SEQRES 23 A 420 GLY ARG TYR ASN GLY LEU LEU GLU LEU LEU ASP GLY PRO SEQRES 24 A 420 SER GLU THR GLY ILE GLY PHE ALA LEU SER ILE GLU ARG SEQRES 25 A 420 LEU LEU LEU ALA LEU GLU GLU GLU GLY ILE GLU LEU ASP SEQRES 26 A 420 ILE GLU GLU ASN LEU ASP LEU PHE ILE VAL THR MET GLY SEQRES 27 A 420 ASP GLN ALA ASP ARG TYR ALA VAL LYS LEU LEU ASN HIS SEQRES 28 A 420 LEU ARG HIS ASN GLY ILE LYS ALA ASP LYS ASP TYR LEU SEQRES 29 A 420 GLN ARG LYS ILE LYS GLY GLN MET LYS GLN ALA ASP ARG SEQRES 30 A 420 LEU GLY ALA LYS PHE THR ILE VAL ILE GLY ASP GLN GLU SEQRES 31 A 420 LEU GLU ASN ASN LYS ILE ASP VAL LYS ASN MET THR THR SEQRES 32 A 420 GLY GLU SER GLU THR ILE GLU LEU ASP ALA LEU VAL GLU SEQRES 33 A 420 TYR PHE LYS LYS SEQRES 1 B 420 MET ILE LYS ILE PRO ARG GLY THR GLN ASP ILE LEU PRO SEQRES 2 B 420 GLU ASP SER LYS LYS TRP ARG TYR ILE GLU ASN GLN LEU SEQRES 3 B 420 ASP GLU LEU MET THR PHE TYR ASN TYR LYS GLU ILE ARG SEQRES 4 B 420 THR PRO ILE PHE GLU SER THR ASP LEU PHE ALA ARG GLY SEQRES 5 B 420 VAL GLY ASP SER THR ASP VAL VAL GLN LYS GLU MET TYR SEQRES 6 B 420 THR PHE LYS ASP LYS GLY ASP ARG SER ILE THR LEU ARG SEQRES 7 B 420 PRO GLU GLY THR ALA ALA VAL VAL ARG SER TYR ILE GLU SEQRES 8 B 420 HIS LYS MET GLN GLY ASN PRO ASN GLN PRO ILE LYS LEU SEQRES 9 B 420 TYR TYR ASN GLY PRO MET PHE ARG TYR GLU ARG LYS GLN SEQRES 10 B 420 LYS GLY ARG TYR ARG GLN PHE ASN GLN PHE GLY VAL GLU SEQRES 11 B 420 ALA ILE GLY ALA GLU ASN PRO SER VAL ASP ALA GLU VAL SEQRES 12 B 420 LEU ALA MET VAL MET HIS ILE TYR GLN SER PHE GLY LEU SEQRES 13 B 420 LYS HIS LEU LYS LEU VAL ILE ASN SER VAL GLY ASP MET SEQRES 14 B 420 ALA SER ARG LYS GLU TYR ASN GLU ALA LEU VAL LYS HIS SEQRES 15 B 420 PHE GLU PRO VAL ILE HIS GLU PHE CYS SER ASP CYS GLN SEQRES 16 B 420 SER ARG LEU HIS THR ASP PRO MET ARG ILE LEU ASP CYS SEQRES 17 B 420 LYS VAL ASP ARG ASP LYS GLU ALA ILE LYS THR ALA PRO SEQRES 18 B 420 ARG ILE THR ASP PHE LEU ASN GLU GLU SER LYS ALA TYR SEQRES 19 B 420 TYR GLU GLN VAL LYS ALA TYR LEU ASP ASP LEU GLY ILE SEQRES 20 B 420 PRO TYR THR GLU ASP PRO ASN LEU VAL ARG GLY LEU ASP SEQRES 21 B 420 TYR TYR THR HIS THR ALA PHE GLU LEU MET MET ASP ASN SEQRES 22 B 420 PRO ASN TYR ASP GLY ALA ILE THR THR LEU CYS GLY GLY SEQRES 23 B 420 GLY ARG TYR ASN GLY LEU LEU GLU LEU LEU ASP GLY PRO SEQRES 24 B 420 SER GLU THR GLY ILE GLY PHE ALA LEU SER ILE GLU ARG SEQRES 25 B 420 LEU LEU LEU ALA LEU GLU GLU GLU GLY ILE GLU LEU ASP SEQRES 26 B 420 ILE GLU GLU ASN LEU ASP LEU PHE ILE VAL THR MET GLY SEQRES 27 B 420 ASP GLN ALA ASP ARG TYR ALA VAL LYS LEU LEU ASN HIS SEQRES 28 B 420 LEU ARG HIS ASN GLY ILE LYS ALA ASP LYS ASP TYR LEU SEQRES 29 B 420 GLN ARG LYS ILE LYS GLY GLN MET LYS GLN ALA ASP ARG SEQRES 30 B 420 LEU GLY ALA LYS PHE THR ILE VAL ILE GLY ASP GLN GLU SEQRES 31 B 420 LEU GLU ASN ASN LYS ILE ASP VAL LYS ASN MET THR THR SEQRES 32 B 420 GLY GLU SER GLU THR ILE GLU LEU ASP ALA LEU VAL GLU SEQRES 33 B 420 TYR PHE LYS LYS FORMUL 3 HOH *100(H2 O) HELIX 1 1 LEU A 12 ASN A 34 1 23 HELIX 2 2 THR A 46 ALA A 50 1 5 HELIX 3 3 LYS A 68 ARG A 73 1 6 HELIX 4 4 GLY A 81 HIS A 92 1 12 HELIX 5 5 LYS A 93 ASN A 97 5 5 HELIX 6 6 ASN A 136 PHE A 154 1 19 HELIX 7 7 ASP A 168 GLU A 184 1 17 HELIX 8 8 PRO A 185 PHE A 190 5 6 HELIX 9 9 CYS A 191 ARG A 197 1 7 HELIX 10 10 ASP A 201 LEU A 206 5 6 HELIX 11 11 ARG A 222 PHE A 226 5 5 HELIX 12 12 GLU A 230 GLY A 246 1 17 HELIX 13 13 GLY A 291 LEU A 296 1 6 HELIX 14 14 ILE A 310 GLU A 320 1 11 HELIX 15 15 MET A 337 HIS A 354 1 18 HELIX 16 16 LYS A 367 LEU A 378 1 12 HELIX 17 17 GLY A 387 ASN A 394 1 8 HELIX 18 18 ASP A 412 LYS A 420 1 9 HELIX 19 19 LEU B 12 ASN B 34 1 23 HELIX 20 20 THR B 46 ARG B 51 1 6 HELIX 21 21 LYS B 68 ARG B 73 1 6 HELIX 22 22 GLY B 81 HIS B 92 1 12 HELIX 23 23 LYS B 93 ASN B 97 5 5 HELIX 24 24 ASN B 136 SER B 153 1 18 HELIX 25 25 SER B 231 GLY B 246 1 16 HELIX 26 26 GLY B 291 LEU B 296 1 6 HELIX 27 27 ILE B 310 GLU B 320 1 11 HELIX 28 28 MET B 337 HIS B 354 1 18 HELIX 29 29 LYS B 367 LEU B 378 1 12 HELIX 30 30 GLY B 387 ASN B 394 1 8 HELIX 31 31 ASP B 412 LYS B 419 1 8 SHEET 1 A 8 LYS A 36 GLU A 37 0 SHEET 2 A 8 ILE A 102 PHE A 111 1 O LYS A 103 N LYS A 36 SHEET 3 A 8 GLN A 123 ILE A 132 -1 O PHE A 124 N MET A 110 SHEET 4 A 8 THR A 302 SER A 309 -1 O ILE A 304 N ALA A 131 SHEET 5 A 8 ILE A 280 ASN A 290 -1 O LEU A 283 N SER A 309 SHEET 6 A 8 TYR A 262 ASP A 272 -1 N THR A 263 O ARG A 288 SHEET 7 A 8 LEU A 159 SER A 165 -1 O LYS A 160 N MET A 270 SHEET 8 A 8 THR A 250 GLU A 251 1 N THR A 250 O LEU A 161 SHEET 1 B 3 PHE A 43 SER A 45 0 SHEET 2 B 3 ILE A 75 LEU A 77 -1 N THR A 76 O GLU A 44 SHEET 3 B 3 TYR A 65 PHE A 67 -1 O TYR A 65 N LEU A 77 SHEET 1 C 5 ALA A 359 LYS A 361 0 SHEET 2 C 5 LEU A 332 THR A 336 1 O LEU A 332 N ASP A 360 SHEET 3 C 5 PHE A 382 ILE A 386 1 O PHE A 382 N PHE A 333 SHEET 4 C 5 ILE A 396 ASN A 400 -1 O LYS A 399 N THR A 383 SHEET 5 C 5 SER A 406 ILE A 409 -1 O GLU A 407 N VAL A 398 SHEET 1 D 8 LYS B 36 GLU B 37 0 SHEET 2 D 8 ILE B 102 PHE B 111 1 O LYS B 103 N LYS B 36 SHEET 3 D 8 GLN B 123 ILE B 132 -1 O PHE B 124 N MET B 110 SHEET 4 D 8 THR B 302 SER B 309 -1 O ILE B 304 N ALA B 131 SHEET 5 D 8 ILE B 280 ASN B 290 -1 O LEU B 283 N SER B 309 SHEET 6 D 8 THR B 265 ASP B 272 -1 O THR B 265 N ARG B 288 SHEET 7 D 8 LEU B 159 SER B 165 -1 O LYS B 160 N MET B 270 SHEET 8 D 8 TYR B 249 GLU B 251 1 N THR B 250 O LEU B 161 SHEET 1 E 3 PHE B 43 SER B 45 0 SHEET 2 E 3 ILE B 75 LEU B 77 -1 N THR B 76 O GLU B 44 SHEET 3 E 3 THR B 66 PHE B 67 -1 O PHE B 67 N ILE B 75 SHEET 1 F 5 ALA B 359 LYS B 361 0 SHEET 2 F 5 LEU B 332 THR B 336 1 O LEU B 332 N ASP B 360 SHEET 3 F 5 PHE B 382 ILE B 386 1 O PHE B 382 N PHE B 333 SHEET 4 F 5 LYS B 395 ASN B 400 -1 O LYS B 399 N THR B 383 SHEET 5 F 5 SER B 406 GLU B 410 -1 O GLU B 407 N VAL B 398 SSBOND 1 CYS A 191 CYS A 194 1555 1555 2.86 CISPEP 1 GLN A 100 PRO A 101 0 -0.04 CISPEP 2 GLN B 100 PRO B 101 0 -0.75 CRYST1 125.650 125.650 115.990 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007960 0.004590 0.000000 0.00000 SCALE2 0.000000 0.009190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008620 0.00000