HEADER HYDROLASE 10-MAY-99 1QH3 TITLE HUMAN GLYOXALASE II WITH CACODYLATE AND ACETATE IONS PRESENT IN THE TITLE 2 ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (HYDROXYACYLGLUTATHIONE HYDROLASE); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLYOXALASE II; COMPND 5 EC: 3.1.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM 109; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKK 223-3,ACCI-DELETED; SOURCE 10 OTHER_DETAILS: HETEROLOGOUSLY EXPRESSED KEYWDS METALLO-HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.D.CAMERON,M.RIDDERSTROM,B.OLIN,B.MANNERVIK REVDAT 5 27-DEC-23 1QH3 1 REMARK LINK REVDAT 4 13-JUL-11 1QH3 1 VERSN REVDAT 3 24-FEB-09 1QH3 1 VERSN REVDAT 2 03-NOV-99 1QH3 1 JRNL REMARK SITE REVDAT 1 24-SEP-99 1QH3 0 JRNL AUTH A.D.CAMERON,M.RIDDERSTROM,B.OLIN,B.MANNERVIK JRNL TITL CRYSTAL STRUCTURE OF HUMAN GLYOXALASE II AND ITS COMPLEX JRNL TITL 2 WITH A GLUTATHIONE THIOLESTER SUBSTRATE ANALOGUE. JRNL REF STRUCTURE FOLD.DES. V. 7 1067 1999 JRNL REFN ISSN 0969-2126 JRNL PMID 10508780 JRNL DOI 10.1016/S0969-2126(99)80174-9 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 35004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1799 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 369 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.600 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.007 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.023 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.024 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.018 ; 0.030 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.090 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.166 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.162 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.100 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 14.700; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 29.800; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.910 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.354 ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.722 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.912 ; 6.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: VAN DER WAALS RADII ON ZINC IONS SET TO REMARK 3 0.1A REMARK 4 REMARK 4 1QH3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-99. REMARK 100 THE DEPOSITION ID IS D_1000001034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.911 REMARK 200 MONOCHROMATOR : TRIANGULAR REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 126060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EQUILABRATION AGAINST 15-30% W/V PEG REMARK 280 2000 MONOMETHYL ETHER 0.2M MG-ACETATE, 0.1M NA-CACODYLATE PH 6.5 REMARK 280 AND 2MM DTT REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.54000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.03000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.18500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.03000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.54000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.18500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 612 O HOH B 633 2.16 REMARK 500 OD1 ASP B 260 O HOH B 633 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 621 O HOH B 655 1455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 168 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 168 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 168 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B 194 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 9 -138.72 54.32 REMARK 500 ASP A 11 26.89 -147.39 REMARK 500 GLU A 21 -70.10 -81.52 REMARK 500 CYS A 109 -74.28 167.39 REMARK 500 THR A 135 -61.71 -90.87 REMARK 500 TYR A 221 -2.60 -140.60 REMARK 500 LEU B 9 -137.84 48.13 REMARK 500 ASP B 11 28.50 -153.15 REMARK 500 ALA B 84 19.85 53.52 REMARK 500 CYS B 109 -75.43 172.86 REMARK 500 VAL B 159 -66.69 -97.75 REMARK 500 SER B 213 -166.72 -110.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ONLY THE ARSENIC ATOMS OF CAC A265 AND CAC B265 HAVE BEEN MODELLED. REMARK 600 REMARK 600 CL 467 TENTATIVELY MODELLED AS A CHLORIDE ION. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 261 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 54 NE2 REMARK 620 2 HIS A 56 ND1 90.5 REMARK 620 3 HIS A 110 NE2 94.1 89.1 REMARK 620 4 ASP A 134 OD2 91.0 170.1 100.5 REMARK 620 5 CAC A 463 O2 168.4 83.4 76.1 96.7 REMARK 620 6 HOH A 468 O 104.1 95.3 161.3 74.9 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 262 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 58 OD2 REMARK 620 2 HIS A 59 NE2 85.2 REMARK 620 3 ASP A 134 OD2 164.1 96.0 REMARK 620 4 HIS A 173 NE2 83.0 104.9 111.8 REMARK 620 5 CAC A 463 O1 91.7 170.5 84.5 83.5 REMARK 620 6 HOH A 468 O 86.6 101.3 77.6 150.8 69.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 266 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 185 NE2 REMARK 620 2 HIS A 235 NE2 111.2 REMARK 620 3 GLU A 251 OE2 100.8 114.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CAC A 463 AS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 468 O REMARK 620 2 CAC A 463 O1 63.7 REMARK 620 3 CAC A 463 O2 78.3 117.9 REMARK 620 4 CAC A 463 C1 165.1 101.6 113.1 REMARK 620 5 CAC A 463 C2 81.6 107.8 113.2 101.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 261 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 54 NE2 REMARK 620 2 HIS B 56 ND1 90.4 REMARK 620 3 HIS B 110 NE2 96.6 91.3 REMARK 620 4 ASP B 134 OD2 92.3 172.5 95.4 REMARK 620 5 CAC B 469 O2 174.4 90.3 77.8 87.7 REMARK 620 6 HOH B 473 O 105.3 100.9 154.7 71.6 80.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 262 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 58 OD2 REMARK 620 2 HIS B 59 NE2 84.9 REMARK 620 3 ASP B 134 OD2 164.1 97.4 REMARK 620 4 HIS B 173 NE2 90.7 107.7 103.4 REMARK 620 5 CAC B 469 O1 87.6 172.1 89.1 74.8 REMARK 620 6 HOH B 473 O 85.1 102.7 79.0 148.8 74.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 266 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 185 NE2 REMARK 620 2 GLU B 251 OE2 91.7 REMARK 620 3 HOH B 527 O 91.5 106.2 REMARK 620 4 HOH B 554 O 84.1 164.8 88.5 REMARK 620 5 HOH B 659 O 94.8 91.2 161.3 74.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CAC B 469 AS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 473 O REMARK 620 2 CAC B 469 O1 67.9 REMARK 620 3 CAC B 469 O2 70.1 117.2 REMARK 620 4 CAC B 469 C1 169.9 102.5 113.8 REMARK 620 5 CAC B 469 C2 84.2 107.5 112.2 102.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ZNA REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: BINUCLEAR ZINC BINDING SITE IN A MOLECULE REMARK 800 REMARK 800 SITE_IDENTIFIER: ZNB REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: BINUCLEAR ZINC BINDING SITE IN B MOLECULE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC A 463 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 464 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC A 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 467 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC B 469 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 468 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC B 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 266 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QH5 RELATED DB: PDB DBREF 1QH3 A 1 260 UNP Q16775 GLO2_HUMAN 1 260 DBREF 1QH3 B 1 260 UNP Q16775 GLO2_HUMAN 1 260 SEQRES 1 A 260 MET LYS VAL GLU VAL LEU PRO ALA LEU THR ASP ASN TYR SEQRES 2 A 260 MET TYR LEU VAL ILE ASP ASP GLU THR LYS GLU ALA ALA SEQRES 3 A 260 ILE VAL ASP PRO VAL GLN PRO GLN LYS VAL VAL ASP ALA SEQRES 4 A 260 ALA ARG LYS HIS GLY VAL LYS LEU THR THR VAL LEU THR SEQRES 5 A 260 THR HIS HIS HIS TRP ASP HIS ALA GLY GLY ASN GLU LYS SEQRES 6 A 260 LEU VAL LYS LEU GLU SER GLY LEU LYS VAL TYR GLY GLY SEQRES 7 A 260 ASP ASP ARG ILE GLY ALA LEU THR HIS LYS ILE THR HIS SEQRES 8 A 260 LEU SER THR LEU GLN VAL GLY SER LEU ASN VAL LYS CYS SEQRES 9 A 260 LEU ALA THR PRO CYS HIS THR SER GLY HIS ILE CYS TYR SEQRES 10 A 260 PHE VAL SER LYS PRO GLY GLY SER GLU PRO PRO ALA VAL SEQRES 11 A 260 PHE THR GLY ASP THR LEU PHE VAL ALA GLY CYS GLY LYS SEQRES 12 A 260 PHE TYR GLU GLY THR ALA ASP GLU MET CYS LYS ALA LEU SEQRES 13 A 260 LEU GLU VAL LEU GLY ARG LEU PRO PRO ASP THR ARG VAL SEQRES 14 A 260 TYR CYS GLY HIS GLU TYR THR ILE ASN ASN LEU LYS PHE SEQRES 15 A 260 ALA ARG HIS VAL GLU PRO GLY ASN ALA ALA ILE ARG GLU SEQRES 16 A 260 LYS LEU ALA TRP ALA LYS GLU LYS TYR SER ILE GLY GLU SEQRES 17 A 260 PRO THR VAL PRO SER THR LEU ALA GLU GLU PHE THR TYR SEQRES 18 A 260 ASN PRO PHE MET ARG VAL ARG GLU LYS THR VAL GLN GLN SEQRES 19 A 260 HIS ALA GLY GLU THR ASP PRO VAL THR THR MET ARG ALA SEQRES 20 A 260 VAL ARG ARG GLU LYS ASP GLN PHE LYS MET PRO ARG ASP SEQRES 1 B 260 MET LYS VAL GLU VAL LEU PRO ALA LEU THR ASP ASN TYR SEQRES 2 B 260 MET TYR LEU VAL ILE ASP ASP GLU THR LYS GLU ALA ALA SEQRES 3 B 260 ILE VAL ASP PRO VAL GLN PRO GLN LYS VAL VAL ASP ALA SEQRES 4 B 260 ALA ARG LYS HIS GLY VAL LYS LEU THR THR VAL LEU THR SEQRES 5 B 260 THR HIS HIS HIS TRP ASP HIS ALA GLY GLY ASN GLU LYS SEQRES 6 B 260 LEU VAL LYS LEU GLU SER GLY LEU LYS VAL TYR GLY GLY SEQRES 7 B 260 ASP ASP ARG ILE GLY ALA LEU THR HIS LYS ILE THR HIS SEQRES 8 B 260 LEU SER THR LEU GLN VAL GLY SER LEU ASN VAL LYS CYS SEQRES 9 B 260 LEU ALA THR PRO CYS HIS THR SER GLY HIS ILE CYS TYR SEQRES 10 B 260 PHE VAL SER LYS PRO GLY GLY SER GLU PRO PRO ALA VAL SEQRES 11 B 260 PHE THR GLY ASP THR LEU PHE VAL ALA GLY CYS GLY LYS SEQRES 12 B 260 PHE TYR GLU GLY THR ALA ASP GLU MET CYS LYS ALA LEU SEQRES 13 B 260 LEU GLU VAL LEU GLY ARG LEU PRO PRO ASP THR ARG VAL SEQRES 14 B 260 TYR CYS GLY HIS GLU TYR THR ILE ASN ASN LEU LYS PHE SEQRES 15 B 260 ALA ARG HIS VAL GLU PRO GLY ASN ALA ALA ILE ARG GLU SEQRES 16 B 260 LYS LEU ALA TRP ALA LYS GLU LYS TYR SER ILE GLY GLU SEQRES 17 B 260 PRO THR VAL PRO SER THR LEU ALA GLU GLU PHE THR TYR SEQRES 18 B 260 ASN PRO PHE MET ARG VAL ARG GLU LYS THR VAL GLN GLN SEQRES 19 B 260 HIS ALA GLY GLU THR ASP PRO VAL THR THR MET ARG ALA SEQRES 20 B 260 VAL ARG ARG GLU LYS ASP GLN PHE LYS MET PRO ARG ASP HET ZN A 261 1 HET ZN A 262 1 HET CAC A 463 5 HET ACT A 464 4 HET CAC A 265 1 HET MN A 266 1 HET CL A 467 1 HET ZN B 261 1 HET ZN B 262 1 HET CAC B 469 5 HET ACT B 468 4 HET CAC B 265 1 HET MN B 266 1 HETNAM ZN ZINC ION HETNAM CAC CACODYLATE ION HETNAM ACT ACETATE ION HETNAM MN MANGANESE (II) ION HETNAM CL CHLORIDE ION HETSYN CAC DIMETHYLARSINATE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CAC 4(C2 H6 AS O2 1-) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 8 MN 2(MN 2+) FORMUL 9 CL CL 1- FORMUL 16 HOH *369(H2 O) HELIX 1 H1 PRO A 33 HIS A 43 1 11 HELIX 2 H2 ASN A 63 LEU A 69 1 7 HELIX 3 H3 ALA A 149 LEU A 157 1 9 HELIX 4 H4 THR A 176 VAL A 186 1 11 HELIX 5 H5 ALA A 191 ILE A 206 1 16 HELIX 6 H6 LEU A 215 THR A 220 1 6 HELIX 7 H7 LYS A 230 ALA A 236 1 7 HELIX 8 H8 PRO A 241 GLN A 254 1 14 SHEET 1 S1 1 LYS A 2 ALA A 8 0 SHEET 1 S2 1 ASN A 12 ILE A 18 0 SHEET 1 S3 1 GLU A 24 VAL A 28 0 SHEET 1 S4 1 THR A 49 THR A 53 0 SHEET 1 S5 1 LEU A 73 GLY A 77 0 SHEET 1 S6 1 HIS A 87 THR A 90 0 SHEET 1 S7 1 SER A 93 VAL A 97 0 SHEET 1 S8 1 LEU A 100 PRO A 108 0 SHEET 1 S9 1 HIS A 114 LYS A 121 0 SHEET 1 S10 1 PRO A 127 GLY A 133 0 SHEET 1 S11 1 THR A 167 CYS A 171 0 LINK NE2 HIS A 54 ZN ZN A 261 1555 1555 2.31 LINK ND1 HIS A 56 ZN ZN A 261 1555 1555 2.32 LINK OD2 ASP A 58 ZN ZN A 262 1555 1555 2.33 LINK NE2 HIS A 59 ZN ZN A 262 1555 1555 2.17 LINK NE2 HIS A 110 ZN ZN A 261 1555 1555 2.26 LINK OD2 ASP A 134 ZN ZN A 261 1555 1555 2.21 LINK OD2 ASP A 134 ZN ZN A 262 1555 1555 2.09 LINK SG CYS A 153 AS CAC A 265 1555 1555 2.20 LINK NE2 HIS A 173 ZN ZN A 262 1555 1555 2.12 LINK NE2 HIS A 185 MN MN A 266 1555 1555 2.01 LINK NE2 HIS A 235 MN MN A 266 1555 1555 2.19 LINK OE2 GLU A 251 MN MN A 266 1555 1555 1.80 LINK ZN ZN A 261 O2 CAC A 463 1555 1555 2.22 LINK ZN ZN A 261 O HOH A 468 1555 1555 2.12 LINK ZN ZN A 262 O1 CAC A 463 1555 1555 2.36 LINK ZN ZN A 262 O HOH A 468 1555 1555 2.11 LINK AS CAC A 463 O HOH A 468 1555 1555 2.77 LINK NE2 HIS B 54 ZN ZN B 261 1555 1555 2.24 LINK ND1 HIS B 56 ZN ZN B 261 1555 1555 2.25 LINK OD2 ASP B 58 ZN ZN B 262 1555 1555 2.23 LINK NE2 HIS B 59 ZN ZN B 262 1555 1555 2.07 LINK NE2 HIS B 110 ZN ZN B 261 1555 1555 2.26 LINK OD2 ASP B 134 ZN ZN B 261 1555 1555 2.31 LINK OD2 ASP B 134 ZN ZN B 262 1555 1555 2.14 LINK SG CYS B 153 AS CAC B 265 1555 1555 2.23 LINK NE2 HIS B 173 ZN ZN B 262 1555 1555 2.10 LINK NE2 HIS B 185 MN MN B 266 1555 1555 2.34 LINK OE2 GLU B 251 MN MN B 266 1555 1555 2.09 LINK ZN ZN B 261 O2 CAC B 469 1555 1555 2.01 LINK ZN ZN B 261 O HOH B 473 1555 1555 2.13 LINK ZN ZN B 262 O1 CAC B 469 1555 1555 2.36 LINK ZN ZN B 262 O HOH B 473 1555 1555 1.94 LINK MN MN B 266 O HOH B 527 1555 1555 2.08 LINK MN MN B 266 O HOH B 554 1555 1555 2.26 LINK MN MN B 266 O HOH B 659 1555 1555 2.15 LINK AS CAC B 469 O HOH B 473 1555 1555 2.69 CISPEP 1 VAL A 211 PRO A 212 0 -2.88 CISPEP 2 VAL B 211 PRO B 212 0 -1.05 SITE 1 ZNA 9 HIS A 54 HIS A 56 HIS A 110 ASP A 134 SITE 2 ZNA 9 CAC A 463 HOH A 468 ASP A 58 HIS A 59 SITE 3 ZNA 9 HIS A 173 SITE 1 ZNB 9 HIS B 54 HIS B 56 HIS B 110 ASP B 134 SITE 2 ZNB 9 CAC B 469 HOH B 473 ASP B 58 HIS B 59 SITE 3 ZNB 9 HIS B 173 SITE 1 AC1 7 HIS A 54 HIS A 56 HIS A 110 ASP A 134 SITE 2 AC1 7 ZN A 262 CAC A 463 HOH A 468 SITE 1 AC2 7 ASP A 58 HIS A 59 ASP A 134 HIS A 173 SITE 2 AC2 7 ZN A 261 CAC A 463 HOH A 468 SITE 1 AC3 10 HIS A 56 ASP A 58 HIS A 110 ASP A 134 SITE 2 AC3 10 TYR A 145 HIS A 173 ZN A 261 ZN A 262 SITE 3 AC3 10 HOH A 468 HOH A 506 SITE 1 AC4 9 PHE A 137 CYS A 141 LYS A 143 TYR A 175 SITE 2 AC4 9 ARG A 249 LYS A 252 HOH A 471 HOH A 507 SITE 3 AC4 9 HOH A 521 SITE 1 AC5 2 CYS A 153 GLU A 158 SITE 1 AC6 4 HIS A 185 HIS A 235 GLU A 251 CL A 467 SITE 1 AC7 2 MN A 266 MN B 266 SITE 1 AC8 7 HIS B 54 HIS B 56 HIS B 110 ASP B 134 SITE 2 AC8 7 ZN B 262 CAC B 469 HOH B 473 SITE 1 AC9 7 ASP B 58 HIS B 59 ASP B 134 HIS B 173 SITE 2 AC9 7 ZN B 261 CAC B 469 HOH B 473 SITE 1 BC1 11 HIS B 56 ASP B 58 HIS B 110 ASP B 134 SITE 2 BC1 11 HIS B 173 TYR B 175 ZN B 261 ZN B 262 SITE 3 BC1 11 HOH B 473 HOH B 511 HOH B 616 SITE 1 BC2 7 PHE B 137 CYS B 141 TYR B 175 ARG B 249 SITE 2 BC2 7 LYS B 252 HOH B 476 HOH B 512 SITE 1 BC3 3 CYS B 153 LYS B 154 GLU B 158 SITE 1 BC4 6 CL A 467 HIS B 185 GLU B 251 HOH B 527 SITE 2 BC4 6 HOH B 554 HOH B 659 CRYST1 39.080 72.370 162.060 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025588 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013818 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006170 0.00000 MTRIX1 1 -0.999560 -0.016830 0.024440 26.02553 1 MTRIX2 1 0.029320 -0.687370 0.725720 46.35559 1 MTRIX3 1 0.004590 0.726120 0.687560 -17.67834 1