HEADER VIRAL PROTEIN 28-MAY-99 1QHV TITLE HUMAN ADENOVIRUS SEROTYPE 2 FIBRE HEAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (ADENOVIRUS FIBRE); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEAD DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 2; SOURCE 3 ORGANISM_TAXID: 10515; SOURCE 4 STRAIN: SEROTYPE 2; SOURCE 5 GENE: LOCUS AD2H2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: VIRUS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PACCL29 KEYWDS RECEPTOR BINDING, EXTRA-ORDINARY STABILITY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.VAN RAAIJ,N.LOUIS,J.CHROBOCZEK,S.CUSACK REVDAT 4 16-AUG-23 1QHV 1 REMARK REVDAT 3 13-JUL-11 1QHV 1 VERSN REVDAT 2 24-FEB-09 1QHV 1 VERSN REVDAT 1 29-SEP-99 1QHV 0 JRNL AUTH M.J.VAN RAAIJ,N.LOUIS,J.CHROBOCZEK,S.CUSACK JRNL TITL STRUCTURE OF THE HUMAN ADENOVIRUS SEROTYPE 2 FIBER HEAD JRNL TITL 2 DOMAIN AT 1.5 A RESOLUTION. JRNL REF VIROLOGY V. 262 333 1999 JRNL REFN ISSN 0042-6822 JRNL PMID 10502512 JRNL DOI 10.1006/VIRO.1999.9849 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.LOUIS,P.FENDER,A.BARGE,P.KITTS,J.CHROBOCZEK REMARK 1 TITL CELL-BINDING DOMAIN OF ADENOVIRUS SEROTYPE 2 FIBER REMARK 1 REF J.VIROL. V. 68 4104 1994 REMARK 1 REFN ISSN 0022-538X REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 35701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.109 REMARK 3 FREE R VALUE : 0.143 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1119 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.053 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.051 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.801 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.016 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.014 ; 0.010 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.015 ; 0.017 REMARK 3 H-BOND OR METAL COORDINATION (A) : 0.020 ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.026 ; 0.030 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.105 ; 0.070 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.176 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.263 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.112 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : 0.300 ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 0.000 ; 15.000 REMARK 3 PLANAR (DEGREES) : 4.900 ; 1.500 REMARK 3 STAGGERED (DEGREES) : 11.600; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 30.700; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 5.846 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.892 ; 5.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 9.208 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 10.864; 5.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QHV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-99. REMARK 100 THE DEPOSITION ID IS D_1000001125. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.993 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36820 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 10.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.17200 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1KNB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE 25 % (V/V) REMARK 280 GLYCEROL 1-1.5 M AMMONIUM SULPHATE PH 4.0 WITH ACETIC ACID REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE FUNCTIONAL MOLECULE IS A TRIMER. THIS TRIMER IS REMARK 300 GENERATED USING THE THREE-FOLD AXIS SYMMETRY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 95.35000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 47.67500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 82.57552 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 304 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 305 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 306 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 404 156.65 77.20 REMARK 500 ASN A 410 13.61 -146.39 REMARK 500 SER A 485 -164.66 -129.64 REMARK 500 ASN A 537 -131.92 48.09 REMARK 500 SER A 546 -1.56 72.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 510 -11.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 583 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 584 DBREF 1QHV A 388 582 UNP Q96590 Q96590_ADE02 388 582 SEQRES 1 A 195 ALA ILE THR ILE GLY ASN LYS ASN ASP ASP LYS LEU THR SEQRES 2 A 195 LEU TRP THR THR PRO ASP PRO SER PRO ASN CYS ARG ILE SEQRES 3 A 195 HIS SER ASP ASN ASP CYS LYS PHE THR LEU VAL LEU THR SEQRES 4 A 195 LYS CYS GLY SER GLN VAL LEU ALA THR VAL ALA ALA LEU SEQRES 5 A 195 ALA VAL SER GLY ASP LEU SER SER MET THR GLY THR VAL SEQRES 6 A 195 ALA SER VAL SER ILE PHE LEU ARG PHE ASP GLN ASN GLY SEQRES 7 A 195 VAL LEU MET GLU ASN SER SER LEU LYS LYS HIS TYR TRP SEQRES 8 A 195 ASN PHE ARG ASN GLY ASN SER THR ASN ALA ASN PRO TYR SEQRES 9 A 195 THR ASN ALA VAL GLY PHE MET PRO ASN LEU LEU ALA TYR SEQRES 10 A 195 PRO LYS THR GLN SER GLN THR ALA LYS ASN ASN ILE VAL SEQRES 11 A 195 SER GLN VAL TYR LEU HIS GLY ASP LYS THR LYS PRO MET SEQRES 12 A 195 ILE LEU THR ILE THR LEU ASN GLY THR SER GLU SER THR SEQRES 13 A 195 GLU THR SER GLU VAL SER THR TYR SER MET SER PHE THR SEQRES 14 A 195 TRP SER TRP GLU SER GLY LYS TYR THR THR GLU THR PHE SEQRES 15 A 195 ALA THR ASN SER TYR THR PHE SER TYR ILE ALA GLN GLU HET SO4 A 583 5 HET SO4 A 584 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *305(H2 O) HELIX 1 1 ASP A 397 LEU A 399 5 3 HELIX 2 2 LEU A 445 MET A 448 1 4 HELIX 3 3 VAL A 495 PHE A 497 5 3 HELIX 4 4 ALA A 512 ASN A 514 5 3 HELIX 5 5 LEU A 522 GLY A 524 5 3 HELIX 6 6 GLY A 538 SER A 540 5 3 SHEET 1 A 4 THR A 400 TRP A 402 0 SHEET 2 A 4 CYS A 419 CYS A 428 -1 N LEU A 425 O LEU A 401 SHEET 3 A 4 GLN A 431 ALA A 440 -1 N LEU A 439 O LYS A 420 SHEET 4 A 4 TYR A 574 ILE A 579 -1 N TYR A 578 O VAL A 432 SHEET 1 B 4 SER A 454 PHE A 461 0 SHEET 2 B 4 TYR A 551 SER A 558 -1 N TRP A 557 O VAL A 455 SHEET 3 B 4 PRO A 529 LEU A 536 -1 N THR A 535 O SER A 554 SHEET 4 B 4 ASN A 515 TYR A 521 -1 N VAL A 520 O MET A 530 SITE 1 AC1 5 HOH A 193 HOH A 212 ASP A 397 ARG A 481 SITE 2 AC1 5 GLY A 483 SITE 1 AC2 7 HOH A 230 HOH A 238 HOH A 293 ASN A 393 SITE 2 AC2 7 LYS A 398 GLU A 560 SER A 561 CRYST1 95.350 95.350 48.800 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010488 0.006055 0.000000 0.00000 SCALE2 0.000000 0.012110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020492 0.00000