HEADER KINASE INHIBITOR/PEPTIDE 23-JUN-99 1QJB TITLE 14-3-3 ZETA/PHOSPHOPEPTIDE COMPLEX (MODE 1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN ZETA/DELTA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PHOSPHOPEPTIDE; COMPND 7 CHAIN: Q, S; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: F' IQ; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PKK233; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS KINASE INHIBITOR-PEPTIDE COMPLEX, SIGNAL TRANSDUCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.RITTINGER,J.BUDMAN,J.XU,S.VOLINIA,L.C.CANTLEY,S.J.SMERDON, AUTHOR 2 S.J.GAMBLIN,M.B.YAFFE REVDAT 6 23-OCT-24 1QJB 1 REMARK REVDAT 5 01-MAY-24 1QJB 1 LINK REVDAT 4 28-FEB-18 1QJB 1 SOURCE REVDAT 3 05-SEP-12 1QJB 1 COMPND KEYWDS JRNL REMARK REVDAT 3 2 1 VERSN DBREF FORMUL MASTER REVDAT 2 24-FEB-09 1QJB 1 VERSN REVDAT 1 15-SEP-99 1QJB 0 SPRSDE 15-SEP-99 1QJB 14PS JRNL AUTH K.RITTINGER,J.BUDMAN,J.XU,S.VOLINIA,L.C.CANTLEY,S.J.SMERDON, JRNL AUTH 2 S.J.GAMBLIN,M.B.YAFFE JRNL TITL STRUCTURAL ANALYSIS OF 14-3-3 PHOSPHOPEPTIDE COMPLEXES JRNL TITL 2 IDENTIFIES A DUAL ROLE FOR THE NUCLEAR EXPORT SIGNAL OF JRNL TITL 3 14-3-3 IN LIGAND BINDING JRNL REF MOL.CELL V. 4 153 1999 JRNL REFN ISSN 1097-2765 JRNL PMID 10488331 JRNL DOI 10.1016/S1097-2765(00)80363-9 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.5 REMARK 3 NUMBER OF REFLECTIONS : 37059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 393 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.012 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.033 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE C-TERMINAL RESIDUES FOR CHAINS A REMARK 3 AND B WERE NOT SEEN IN THE DENSITY MAPS REMARK 4 REMARK 4 1QJB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUN-99. REMARK 100 THE DEPOSITION ID IS D_1290002849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.20 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX7.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37059 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.5 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 41.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 14-3-3 ZETA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: COMPLEX WAS CRYSTALLIZED FROM 100 MM REMARK 280 MES, PH 6.2, 20 MM MGCL2, 20% ISOPROPANOL AND 15% PEG 4000. REMARK 280 IMPROVED CRYSTALS BY MICRO- AND MACROSEEDING INTO 100 MM MES, PH REMARK 280 6.2, 20 MM MGCL2, 15-17% ISOPROPANOL A 12% PEG 4000., PH 6.20 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.17500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.50000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.99000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.50000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.17500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.99000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, Q, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 69 REMARK 465 GLU A 70 REMARK 465 GLY A 71 REMARK 465 ALA A 72 REMARK 465 GLN A 233 REMARK 465 GLY A 234 REMARK 465 ASP A 235 REMARK 465 GLU A 236 REMARK 465 ALA A 237 REMARK 465 GLU A 238 REMARK 465 ALA A 239 REMARK 465 GLY A 240 REMARK 465 GLU A 241 REMARK 465 GLY A 242 REMARK 465 GLY A 243 REMARK 465 GLU A 244 REMARK 465 ASN A 245 REMARK 465 GLN B 233 REMARK 465 GLY B 234 REMARK 465 ASP B 235 REMARK 465 GLU B 236 REMARK 465 ALA B 237 REMARK 465 GLU B 238 REMARK 465 ALA B 239 REMARK 465 GLY B 240 REMARK 465 GLU B 241 REMARK 465 GLY B 242 REMARK 465 GLY B 243 REMARK 465 GLU B 244 REMARK 465 ASN B 245 REMARK 465 ALA S 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 230 OG REMARK 470 ASP A 231 CG OD1 OD2 REMARK 470 THR A 232 OG1 CG2 REMARK 470 GLN B 67 CG CD OE1 NE2 REMARK 470 SER B 230 OG REMARK 470 ASP B 231 CG OD1 OD2 REMARK 470 THR B 232 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 4 O HOH B 2003 0.25 REMARK 500 CG ASN B 4 O HOH B 2003 1.22 REMARK 500 CA GLY A 140 O HOH A 2128 1.76 REMARK 500 O HOH A 2072 O HOH A 2075 1.76 REMARK 500 O HOH B 2073 O HOH B 2168 1.87 REMARK 500 O ASN B 4 O HOH B 2004 1.88 REMARK 500 CA GLY B 140 O HOH B 2126 1.91 REMARK 500 NH1 ARG A 91 O HOH A 2096 1.92 REMARK 500 O HOH A 2071 O HOH A 2151 1.93 REMARK 500 OE2 GLU A 73 O HOH A 2081 1.93 REMARK 500 ND2 ASN B 38 O HOH B 2039 1.94 REMARK 500 CE LYS B 139 O HOH B 2122 1.98 REMARK 500 NZ LYS B 139 O HOH B 2122 1.99 REMARK 500 O HOH A 2055 O HOH A 2143 2.02 REMARK 500 O HOH A 2058 O HOH A 2111 2.03 REMARK 500 C GLY A 140 O HOH A 2128 2.05 REMARK 500 NE ARG A 41 O HOH A 2052 2.06 REMARK 500 O HOH A 2052 O HOH A 2053 2.06 REMARK 500 O HOH A 2060 O HOH A 2134 2.07 REMARK 500 CB ASN A 38 O HOH A 2047 2.08 REMARK 500 NE ARG A 41 O HOH A 2053 2.09 REMARK 500 NE2 HIS B 164 O HOH B 2142 2.12 REMARK 500 O HOH B 2078 O HOH B 2179 2.13 REMARK 500 ND2 ASN B 4 O HOH B 2003 2.13 REMARK 500 NZ LYS B 85 O HOH B 2084 2.13 REMARK 500 CG LYS B 139 O HOH B 2122 2.15 REMARK 500 O HOH B 2106 O HOH B 2107 2.15 REMARK 500 O ASP B 137 O HOH B 2121 2.15 REMARK 500 O HOH A 2186 O HOH A 2187 2.15 REMARK 500 O HOH B 2135 O HOH B 2137 2.17 REMARK 500 CE LYS A 139 O HOH A 2127 2.18 REMARK 500 ND2 ASN A 38 O HOH A 2047 2.18 REMARK 500 OE2 GLU B 89 O HOH B 2087 2.19 REMARK 500 O HOH B 2015 O HOH B 2021 2.19 REMARK 500 O HOH A 2060 O HOH A 2061 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG LYS B 103 O HOH B 2170 4456 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 18 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 60 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 60 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 80 CD - NE - CZ ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 83 CD - NE - CZ ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 83 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 124 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ILE A 141 C - N - CA ANGL. DEV. = 20.2 DEGREES REMARK 500 ILE A 141 N - CA - CB ANGL. DEV. = 15.4 DEGREES REMARK 500 ARG A 167 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 THR A 215 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 ARG A 222 CD - NE - CZ ANGL. DEV. = 12.7 DEGREES REMARK 500 ASP B 20 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 60 CD - NE - CZ ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG B 60 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG B 60 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 83 CD - NE - CZ ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG B 83 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 83 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 PHE B 104 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG B 127 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 GLY B 140 O - C - N ANGL. DEV. = -11.4 DEGREES REMARK 500 ASP B 223 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 PRO Q 9 N - CA - CB ANGL. DEV. = 6.7 DEGREES REMARK 500 TYR S 8 CA - C - O ANGL. DEV. = -14.0 DEGREES REMARK 500 PRO S 9 N - CA - CB ANGL. DEV. = 8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 74.89 -110.64 REMARK 500 GLN A 76 -48.40 -1.75 REMARK 500 ALA A 134 114.97 -28.02 REMARK 500 ASP A 136 -1.26 81.65 REMARK 500 ASP A 137 -39.72 -147.74 REMARK 500 LYS A 138 103.74 -171.18 REMARK 500 PHE B 104 -56.67 -124.62 REMARK 500 ALA B 109 -74.10 -48.72 REMARK 500 SER B 110 -15.44 83.19 REMARK 500 ASP B 137 -57.35 160.47 REMARK 500 LYS B 139 157.06 177.97 REMARK 500 SER B 230 106.59 -49.67 REMARK 500 ASP B 231 -76.75 -170.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2002 DISTANCE = 6.02 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A37 RELATED DB: PDB REMARK 900 RELATED ID: 1A38 RELATED DB: PDB REMARK 900 RELATED ID: 1A4O RELATED DB: PDB REMARK 900 RELATED ID: 14PS RELATED DB: PDB REMARK 900 RELATED ID: 1QJA RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAINS S AND Q ARE DERIVED FROM THE SEQUENCE, VMRSHSYPPT, REMARK 999 FOUND IN MOUSE POLYOMAVIRUS (STRAIN 3) MIDDLE T ANTIGEN REMARK 999 (SWS: TAMI_POVM3, P03076) DBREF 1QJB A 1 245 UNP P29312 143Z_HUMAN 1 245 DBREF 1QJB B 1 245 UNP P29312 143Z_HUMAN 1 245 DBREF 1QJB S 3 10 PDB 1QJB 1QJB 3 10 DBREF 1QJB Q 3 10 PDB 1QJB 1QJB 3 10 SEQRES 1 A 245 MET ASP LYS ASN GLU LEU VAL GLN LYS ALA LYS LEU ALA SEQRES 2 A 245 GLU GLN ALA GLU ARG TYR ASP ASP MET ALA ALA CYS MET SEQRES 3 A 245 LYS SER VAL THR GLU GLN GLY ALA GLU LEU SER ASN GLU SEQRES 4 A 245 GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL VAL SEQRES 5 A 245 GLY ALA ARG ARG SER SER TRP ARG VAL VAL SER SER ILE SEQRES 6 A 245 GLU GLN LYS THR GLU GLY ALA GLU LYS LYS GLN GLN MET SEQRES 7 A 245 ALA ARG GLU TYR ARG GLU LYS ILE GLU THR GLU LEU ARG SEQRES 8 A 245 ASP ILE CYS ASN ASP VAL LEU SER LEU LEU GLU LYS PHE SEQRES 9 A 245 LEU ILE PRO ASN ALA SER GLN ALA GLU SER LYS VAL PHE SEQRES 10 A 245 TYR LEU LYS MET LYS GLY ASP TYR TYR ARG TYR LEU ALA SEQRES 11 A 245 GLU VAL ALA ALA GLY ASP ASP LYS LYS GLY ILE VAL ASP SEQRES 12 A 245 GLN SER GLN GLN ALA TYR GLN GLU ALA PHE GLU ILE SER SEQRES 13 A 245 LYS LYS GLU MET GLN PRO THR HIS PRO ILE ARG LEU GLY SEQRES 14 A 245 LEU ALA LEU ASN PHE SER VAL PHE TYR TYR GLU ILE LEU SEQRES 15 A 245 ASN SER PRO GLU LYS ALA CYS SER LEU ALA LYS THR ALA SEQRES 16 A 245 PHE ASP GLU ALA ILE ALA GLU LEU ASP THR LEU SER GLU SEQRES 17 A 245 GLU SER TYR LYS ASP SER THR LEU ILE MET GLN LEU LEU SEQRES 18 A 245 ARG ASP ASN LEU THR LEU TRP THR SER ASP THR GLN GLY SEQRES 19 A 245 ASP GLU ALA GLU ALA GLY GLU GLY GLY GLU ASN SEQRES 1 B 245 MET ASP LYS ASN GLU LEU VAL GLN LYS ALA LYS LEU ALA SEQRES 2 B 245 GLU GLN ALA GLU ARG TYR ASP ASP MET ALA ALA CYS MET SEQRES 3 B 245 LYS SER VAL THR GLU GLN GLY ALA GLU LEU SER ASN GLU SEQRES 4 B 245 GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL VAL SEQRES 5 B 245 GLY ALA ARG ARG SER SER TRP ARG VAL VAL SER SER ILE SEQRES 6 B 245 GLU GLN LYS THR GLU GLY ALA GLU LYS LYS GLN GLN MET SEQRES 7 B 245 ALA ARG GLU TYR ARG GLU LYS ILE GLU THR GLU LEU ARG SEQRES 8 B 245 ASP ILE CYS ASN ASP VAL LEU SER LEU LEU GLU LYS PHE SEQRES 9 B 245 LEU ILE PRO ASN ALA SER GLN ALA GLU SER LYS VAL PHE SEQRES 10 B 245 TYR LEU LYS MET LYS GLY ASP TYR TYR ARG TYR LEU ALA SEQRES 11 B 245 GLU VAL ALA ALA GLY ASP ASP LYS LYS GLY ILE VAL ASP SEQRES 12 B 245 GLN SER GLN GLN ALA TYR GLN GLU ALA PHE GLU ILE SER SEQRES 13 B 245 LYS LYS GLU MET GLN PRO THR HIS PRO ILE ARG LEU GLY SEQRES 14 B 245 LEU ALA LEU ASN PHE SER VAL PHE TYR TYR GLU ILE LEU SEQRES 15 B 245 ASN SER PRO GLU LYS ALA CYS SER LEU ALA LYS THR ALA SEQRES 16 B 245 PHE ASP GLU ALA ILE ALA GLU LEU ASP THR LEU SER GLU SEQRES 17 B 245 GLU SER TYR LYS ASP SER THR LEU ILE MET GLN LEU LEU SEQRES 18 B 245 ARG ASP ASN LEU THR LEU TRP THR SER ASP THR GLN GLY SEQRES 19 B 245 ASP GLU ALA GLU ALA GLY GLU GLY GLY GLU ASN SEQRES 1 Q 8 ALA ARG SER HIS SEP TYR PRO ALA SEQRES 1 S 8 ALA ARG SER HIS SEP TYR PRO ALA MODRES 1QJB SEP Q 7 SER PHOSPHOSERINE MODRES 1QJB SEP S 7 SER PHOSPHOSERINE HET SEP Q 7 10 HET SEP S 7 10 HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 3 SEP 2(C3 H8 N O6 P) FORMUL 5 HOH *393(H2 O) HELIX 1 1 ASP A 2 ALA A 16 1 15 HELIX 2 2 ARG A 18 GLN A 32 1 15 HELIX 3 3 SER A 37 GLN A 67 1 31 HELIX 4 4 GLN A 76 PHE A 104 1 29 HELIX 5 5 GLN A 111 GLU A 131 1 21 HELIX 6 6 ILE A 141 MET A 160 1 20 HELIX 7 7 HIS A 164 ILE A 181 1 18 HELIX 8 8 SER A 184 ALA A 201 1 18 HELIX 9 9 GLU A 202 LEU A 206 5 5 HELIX 10 10 SER A 210 THR A 229 1 20 HELIX 11 11 ASP B 2 ALA B 16 1 15 HELIX 12 12 ARG B 18 GLN B 32 1 15 HELIX 13 13 SER B 37 THR B 69 1 33 HELIX 14 14 ALA B 72 PHE B 104 1 33 HELIX 15 15 PHE B 104 ALA B 109 1 6 HELIX 16 16 GLN B 111 ALA B 133 1 23 HELIX 17 17 ILE B 141 MET B 160 1 20 HELIX 18 18 HIS B 164 ILE B 181 1 18 HELIX 19 19 SER B 184 ALA B 201 1 18 HELIX 20 20 GLU B 202 LEU B 206 5 5 HELIX 21 21 SER B 210 THR B 229 1 20 LINK C HIS Q 6 N SEP Q 7 1555 1555 1.35 LINK C SEP Q 7 N TYR Q 8 1555 1555 1.32 LINK C HIS S 6 N SEP S 7 1555 1555 1.33 LINK C SEP S 7 N TYR S 8 1555 1555 1.31 CISPEP 1 TYR Q 8 PRO Q 9 0 5.96 CISPEP 2 TYR S 8 PRO S 9 0 -9.37 CRYST1 68.350 71.980 131.000 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014630 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013893 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007633 0.00000