HEADER COENZYME A BIOSYNTHESIS 23-JUN-99 1QJC TITLE PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE FROM ESCHERICHIA COLI IN TITLE 2 COMPLEX WITH 4'-PHOSPHOPANTETHEINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPAT, PANTETHEINE-PHOSPHATE ADENYLYLTRANSFERASE, DEPHOSPHO- COMPND 5 COA PYROPHOSPHORYLASE; COMPND 6 EC: 2.7.7.3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS COENZYME A BIOSYNTHESIS, TRANSFERASE, NUCLEOTIDYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.IZARD REVDAT 8 13-DEC-23 1QJC 1 REMARK REVDAT 7 29-MAR-17 1QJC 1 TITLE REVDAT 6 24-FEB-09 1QJC 1 VERSN REVDAT 5 09-JUN-03 1QJC 1 REMARK REVDAT 4 28-JAN-02 1QJC 1 TITLE REVDAT 3 17-JAN-02 1QJC 1 JRNL REVDAT 2 27-NOV-01 1QJC 1 JRNL REVDAT 1 27-JUN-01 1QJC 0 JRNL AUTH T.IZARD JRNL TITL THE CRYSTAL STRUCTURES OF PHOSPHOPANTETHEINE JRNL TITL 2 ADENYLYLTRANSFERASE WITH BOUND SUBSTRATES REVEAL THE JRNL TITL 3 ENZYME'S CATALYTIC MECHANISM JRNL REF J.MOL.BIOL. V. 315 487 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11812124 JRNL DOI 10.1006/JMBI.2001.5272 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3212744.080 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 50637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2569 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7387 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 420 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2472 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.210 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.880 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.490 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.390 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.100 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 59.23 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : PNS.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER-TOPOLOGY REMARK 3 TOPOLOGY FILE 3 : PNS.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QJC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUN-99. REMARK 100 THE DEPOSITION ID IS D_1290002846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33838 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 200 DATA REDUNDANCY : 20.02 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1B6T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 67.66550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.66550 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 67.66550 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 67.66550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 67.66550 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 67.66550 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 67.66550 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 67.66550 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 67.66550 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 67.66550 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 67.66550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.66550 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 67.66550 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 67.66550 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 67.66550 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 67.66550 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 67.66550 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 67.66550 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 67.66550 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 67.66550 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 67.66550 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 67.66550 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 67.66550 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 67.66550 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 67.66550 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 67.66550 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 67.66550 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 67.66550 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 67.66550 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 67.66550 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 67.66550 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 67.66550 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 67.66550 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 67.66550 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 67.66550 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 67.66550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL_UNIT: HOMOHEXAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 18260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 FUNCTION: REVERSIBLY TRANSFERS AN ADENYLYL GROUP FROM ATP TO 4'- REMARK 400 PHOSPHOPANTETHEINE, YIELDING DEPHOSPHO-COA (DPCOA) AND REMARK 400 PYROPHOSPHATE. REMARK 400 CATALYTIC ACTIVITY: ATP + PANTETHEINE 4'-PHOSPHATE = DIPHOSPHATE + REMARK 400 DEPHOSPHO-COA. REMARK 400 PATHWAY: COENZYME A (COA) BIOSYNTHESIS; FOURTH STEP. REMARK 400 SUBUNIT: HOMOHEXAMER. REMARK 400 SUBCELLULAR LOCATION: CYTOPLASMIC. REMARK 400 SIMILARITY: BELONGS TO THE COAD FAMILY. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 2 REMARK 465 GLN B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 72 O HOH A 2057 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 40 C - N - CD ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 40 -179.94 -61.30 REMARK 500 ASP A 72 -149.17 53.92 REMARK 500 GLN A 139 38.40 70.76 REMARK 500 PHE B 96 -48.74 -148.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2009 DISTANCE = 6.15 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PNS B1163 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B6T RELATED DB: PDB REMARK 900 PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE IN COMPLEX WITH 3'-DEPHOSPHO- REMARK 900 COA FROM ESCHERICHIA COLI DBREF 1QJC A 2 159 UNP P23875 KDTB_ECOLI 2 159 DBREF 1QJC B 2 159 UNP P23875 KDTB_ECOLI 2 159 SEQRES 1 A 158 GLN LYS ARG ALA ILE TYR PRO GLY THR PHE ASP PRO ILE SEQRES 2 A 158 THR ASN GLY HIS ILE ASP ILE VAL THR ARG ALA THR GLN SEQRES 3 A 158 MET PHE ASP HIS VAL ILE LEU ALA ILE ALA ALA SER PRO SEQRES 4 A 158 SER LYS LYS PRO MET PHE THR LEU GLU GLU ARG VAL ALA SEQRES 5 A 158 LEU ALA GLN GLN ALA THR ALA HIS LEU GLY ASN VAL GLU SEQRES 6 A 158 VAL VAL GLY PHE SER ASP LEU MET ALA ASN PHE ALA ARG SEQRES 7 A 158 ASN GLN HIS ALA THR VAL LEU ILE ARG GLY LEU ARG ALA SEQRES 8 A 158 VAL ALA ASP PHE GLU TYR GLU MET GLN LEU ALA HIS MET SEQRES 9 A 158 ASN ARG HIS LEU MET PRO GLU LEU GLU SER VAL PHE LEU SEQRES 10 A 158 MET PRO SER LYS GLU TRP SER PHE ILE SER SER SER LEU SEQRES 11 A 158 VAL LYS GLU VAL ALA ARG HIS GLN GLY ASP VAL THR HIS SEQRES 12 A 158 PHE LEU PRO GLU ASN VAL HIS GLN ALA LEU MET ALA LYS SEQRES 13 A 158 LEU ALA SEQRES 1 B 158 GLN LYS ARG ALA ILE TYR PRO GLY THR PHE ASP PRO ILE SEQRES 2 B 158 THR ASN GLY HIS ILE ASP ILE VAL THR ARG ALA THR GLN SEQRES 3 B 158 MET PHE ASP HIS VAL ILE LEU ALA ILE ALA ALA SER PRO SEQRES 4 B 158 SER LYS LYS PRO MET PHE THR LEU GLU GLU ARG VAL ALA SEQRES 5 B 158 LEU ALA GLN GLN ALA THR ALA HIS LEU GLY ASN VAL GLU SEQRES 6 B 158 VAL VAL GLY PHE SER ASP LEU MET ALA ASN PHE ALA ARG SEQRES 7 B 158 ASN GLN HIS ALA THR VAL LEU ILE ARG GLY LEU ARG ALA SEQRES 8 B 158 VAL ALA ASP PHE GLU TYR GLU MET GLN LEU ALA HIS MET SEQRES 9 B 158 ASN ARG HIS LEU MET PRO GLU LEU GLU SER VAL PHE LEU SEQRES 10 B 158 MET PRO SER LYS GLU TRP SER PHE ILE SER SER SER LEU SEQRES 11 B 158 VAL LYS GLU VAL ALA ARG HIS GLN GLY ASP VAL THR HIS SEQRES 12 B 158 PHE LEU PRO GLU ASN VAL HIS GLN ALA LEU MET ALA LYS SEQRES 13 B 158 LEU ALA HET SO4 A1160 5 HET SO4 A1161 5 HET SO4 B1160 5 HET SO4 B1161 5 HET SO4 B1162 5 HET PNS B1163 22 HETNAM SO4 SULFATE ION HETNAM PNS 4'-PHOSPHOPANTETHEINE FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 PNS C11 H23 N2 O7 P S FORMUL 9 HOH *277(H2 O) HELIX 1 1 THR A 15 GLN A 27 1 13 HELIX 2 2 THR A 47 THR A 59 1 13 HELIX 3 3 LEU A 73 GLN A 81 1 9 HELIX 4 4 ASP A 95 MET A 110 1 16 HELIX 5 5 SER A 121 SER A 125 5 5 HELIX 6 6 SER A 128 HIS A 138 1 11 HELIX 7 7 VAL A 142 LEU A 146 5 5 HELIX 8 8 PRO A 147 ALA A 159 1 13 HELIX 9 9 THR B 15 GLN B 27 1 13 HELIX 10 10 SER B 39 LYS B 43 5 5 HELIX 11 11 THR B 47 THR B 59 1 13 HELIX 12 12 LEU B 73 GLN B 81 1 9 HELIX 13 13 VAL B 93 MET B 110 1 18 HELIX 14 14 SER B 121 SER B 125 5 5 HELIX 15 15 SER B 128 HIS B 138 1 11 HELIX 16 16 VAL B 142 LEU B 146 5 5 HELIX 17 17 PRO B 147 LEU B 158 1 12 SHEET 1 AA 5 VAL A 65 PHE A 70 0 SHEET 2 AA 5 HIS A 31 ALA A 37 1 O VAL A 32 N GLU A 66 SHEET 3 AA 5 ARG A 4 GLY A 9 1 O ALA A 5 N ILE A 33 SHEET 4 AA 5 VAL A 85 GLY A 89 1 O VAL A 85 N ILE A 6 SHEET 5 AA 5 GLU A 114 LEU A 118 1 O GLU A 114 N LEU A 86 SHEET 1 BA 5 VAL B 65 PHE B 70 0 SHEET 2 BA 5 HIS B 31 ALA B 37 1 O VAL B 32 N GLU B 66 SHEET 3 BA 5 ARG B 4 GLY B 9 1 O ALA B 5 N ILE B 33 SHEET 4 BA 5 VAL B 85 GLY B 89 1 O VAL B 85 N ILE B 6 SHEET 5 BA 5 GLU B 114 LEU B 118 1 O GLU B 114 N LEU B 86 CISPEP 1 ASP A 12 PRO A 13 0 -0.32 CISPEP 2 ASP B 12 PRO B 13 0 -0.38 SITE 1 AC1 7 SER A 121 LYS A 122 HOH A2138 HOH A2139 SITE 2 AC1 7 HOH A2140 HIS B 104 ARG B 107 SITE 1 AC2 7 HIS A 18 ARG A 91 SER A 128 SER A 129 SITE 2 AC2 7 HOH A2019 HOH A2074 HOH A2142 SITE 1 AC3 7 HIS A 104 ARG A 107 SER B 121 LYS B 122 SITE 2 AC3 7 HOH B2124 HOH B2125 HOH B2126 SITE 1 AC4 7 HIS B 18 ARG B 91 SER B 128 SER B 129 SITE 2 AC4 7 HOH B2014 HOH B2127 HOH B2134 SITE 1 AC5 7 SER B 39 PRO B 40 SER B 41 ARG B 137 SITE 2 AC5 7 HIS B 138 HOH B2128 HOH B2130 SITE 1 AC6 16 GLY B 9 THR B 10 ALA B 37 LYS B 42 SITE 2 AC6 16 LEU B 73 MET B 74 ARG B 88 TYR B 98 SITE 3 AC6 16 LEU B 102 GLU B 134 HIS B 138 HOH B2131 SITE 4 AC6 16 HOH B2132 HOH B2133 HOH B2134 HOH B2135 CRYST1 135.331 135.331 135.331 90.00 90.00 90.00 I 2 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007389 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007389 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007389 0.00000 MTRIX1 1 -0.066398 0.128795 -0.989446 63.90040 1 MTRIX2 1 0.084424 -0.987353 -0.134188 67.71140 1 MTRIX3 1 -0.994215 -0.092443 0.054685 67.06110 1