HEADER TONB DEPENDENT RECEPTOR 18-JUL-99 1QKC TITLE ESCHERICHIA COLI FERRIC HYDROXAMATE UPTAKE RECEPTOR (FHUA) IN COMPLEX TITLE 2 DELTA TWO-ALBOMYCIN CAVEAT 1QKC GCN B 2 HAS WRONG CHIRALITY AT ATOM C1 GCN B 2 HAS WRONG CAVEAT 2 1QKC CHIRALITY AT ATOM C2 GMH B 5 HAS WRONG CHIRALITY AT ATOM C6 CAVEAT 3 1QKC GMH B 10 HAS WRONG CHIRALITY AT ATOM C6 FTT A 1006 HAS CAVEAT 4 1QKC WRONG CHIRALITY AT ATOM C3 ALB A 1022 HAS WRONG CHIRALITY CAVEAT 5 1QKC AT ATOM C8 ALB A 1022 HAS WRONG CHIRALITY AT ATOM C22 ALB A CAVEAT 6 1QKC 1022 HAS WRONG CHIRALITY AT ATOM C25 ALB A 1022 HAS WRONG CAVEAT 7 1QKC CHIRALITY AT ATOM C27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERRIC HYDROXAMATE RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FHUA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: A HEXAHISTIDINE TAG PLUS FIVE ADDITIONAL LINKER COMPND 8 RESIDUES HAVE BEEN GENETICALLY INSERTED AFTER RESIDUE 405 OF THE COMPND 9 MATURE FHUA SEQUENCE AS AN AFFINITY TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: AW740; SOURCE 5 VARIANT: RA-CHEMOTYPE; SOURCE 6 CELL: BACTERIAL; SOURCE 7 CELLULAR_LOCATION: OUTER MEMBRANE; SOURCE 8 GENE: FHUA; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: AW740; SOURCE 12 EXPRESSION_SYSTEM_VARIANT: RA-CHEMOTYPE; SOURCE 13 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PHX405; SOURCE 15 EXPRESSION_SYSTEM_GENE: FHUA405.H6 KEYWDS TONB DEPENDENT RECEPTOR, TONB-DEPENDENT RECEPTOR, INTEGRAL OUTER KEYWDS 2 MEMBRANE PROTEIN, FERRICHROME, SIDEROPHORE RECEPTOR, ANTIBIOTIC, KEYWDS 3 ALBOMYCIN, ACTIVE TRANSPORTER, IRON TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.D.FERGUSON,V.BRAUN,H.-P.FIEDLER,J.W.COULTON,K.DIEDERICHS,W.WELTE REVDAT 9 23-OCT-24 1QKC 1 REMARK REVDAT 8 13-DEC-23 1QKC 1 HETSYN LINK REVDAT 7 29-JUL-20 1QKC 1 CAVEAT COMPND REMARK HETNAM REVDAT 7 2 1 LINK SITE ATOM REVDAT 6 01-JUL-20 1QKC 1 CAVEAT LINK REVDAT 5 09-OCT-19 1QKC 1 JRNL LINK REVDAT 4 07-MAR-18 1QKC 1 SOURCE REVDAT 3 17-JAN-18 1QKC 1 REMARK REVDAT 2 24-FEB-09 1QKC 1 VERSN REVDAT 1 05-JUN-00 1QKC 0 JRNL AUTH A.D.FERGUSON,V.BRAUN,H.P.FIEDLER,J.W.COULTON,K.DIEDERICHS, JRNL AUTH 2 W.WELTE JRNL TITL CRYSTAL STRUCTURE OF THE ANTIBIOTIC ALBOMYCIN IN COMPLEX JRNL TITL 2 WITH THE OUTER MEMBRANE TRANSPORTER FHUA. JRNL REF PROTEIN SCI. V. 9 956 2000 JRNL REFN ISSN 0961-8368 JRNL PMID 10850805 JRNL DOI 10.1110/PS.9.5.956 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.D.FERGUSON,J.BREED,K.DIEDERICHS,W.WELTE,J.W.COULTON REMARK 1 TITL AN INTERNAL AFFINITY-TAG FOR PURIFICATION AND REMARK 1 TITL 2 CRYSTALLIZATION OF THE SIDEROPHORE RECEPTOR FHUA, INTEGRAL REMARK 1 TITL 3 OUTER MEMBRANE PROTEIN FROM ESCHERICHIA COLI K-12 REMARK 1 REF PROTEIN SCI. V. 7 1636 1998 REMARK 1 REFN ISSN 0961-8368 REMARK 1 PMID 9684898 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.D.FERGUSON,E.HOFMANN,J.W.COULTON,K.DIEDERICHS,W.WELTE REMARK 1 TITL SIDEROPHORE-MEDIATED IRON TRANSPORT: CRYSTAL STRUCTURE OF REMARK 1 TITL 2 FHUA WITH BOUND LIPOPOLYSACCHARIDE REMARK 1 REF SCIENCE V. 282 2215 1998 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 9856937 REMARK 1 DOI 10.1126/SCIENCE.282.5397.2215 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.4 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 136290.090 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 25029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1247 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3799 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 216 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5523 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 312 REMARK 3 SOLVENT ATOMS : 332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -14.98000 REMARK 3 B22 (A**2) : -14.98000 REMARK 3 B33 (A**2) : 29.97000 REMARK 3 B12 (A**2) : 15.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : 0.50 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.53 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.63 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 2.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.820 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.220 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.500 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.970 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.710 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 68.03 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-99. REMARK 100 THE DEPOSITION ID IS D_1290002949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.40 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.051 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38021 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.15300 REMARK 200 R SYM (I) : 0.13900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36100 REMARK 200 R SYM FOR SHELL (I) : 0.34900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 0.4 REMARK 200 STARTING MODEL: 1QFF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE (PH 6.4), REMARK 280 14.0% POLYETHYLGLYCOL 2000 MONOMETHYLETHER, 20% GLYCEROL, 3% REMARK 280 POLYETHYLGLYCOL 200, 1% CIS-INOSITOL, 0.3 MM DELTA TWO ALBOMYCIN, REMARK 280 PH 6.40 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.78333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.56667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.17500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.95833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.39167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL_UNIT: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 RESIDUES 406 - 416 RESULT FROM A HEXAHISTIDINE TAG PLUS REMARK 400 FIVE ADDITIONAL LINKER RESIDUES (P405-SSHHHHHHGSS) REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 LYS A 5 REMARK 465 GLU A 6 REMARK 465 ASP A 7 REMARK 465 THR A 8 REMARK 465 ILE A 9 REMARK 465 THR A 10 REMARK 465 VAL A 11 REMARK 465 THR A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 PRO A 15 REMARK 465 ALA A 16 REMARK 465 PRO A 17 REMARK 465 GLN A 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N2 GCN B 2 O2 FTT A 1004 1.91 REMARK 500 O4 GCN B 2 O2 FTT A 1006 2.00 REMARK 500 N2 PA1 B 1 O2 FTT A 1002 2.07 REMARK 500 C2 PA1 B 1 C1 FTT A 1002 2.14 REMARK 500 O ALA A 562 OG1 THR A 610 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 47 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP A 179 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 24 -148.15 -52.81 REMARK 500 ALA A 25 3.37 -171.20 REMARK 500 ALA A 26 -73.41 76.04 REMARK 500 ILE A 28 11.94 -67.32 REMARK 500 THR A 35 9.46 -66.55 REMARK 500 PRO A 47 9.78 -67.70 REMARK 500 ALA A 59 21.83 -69.69 REMARK 500 LYS A 67 -71.63 -59.21 REMARK 500 VAL A 78 -2.15 -148.16 REMARK 500 THR A 80 6.59 -60.33 REMARK 500 ARG A 81 23.94 -154.72 REMARK 500 ASP A 88 55.05 -92.26 REMARK 500 ASN A 103 62.21 -167.87 REMARK 500 ASN A 107 60.35 65.81 REMARK 500 ASN A 114 137.89 -176.99 REMARK 500 PHE A 115 -146.79 56.48 REMARK 500 TYR A 116 20.26 -68.83 REMARK 500 ASN A 117 78.19 -113.55 REMARK 500 ALA A 168 119.12 -177.19 REMARK 500 ARG A 222 77.71 -117.20 REMARK 500 PRO A 223 1.09 -51.77 REMARK 500 ASP A 224 -122.43 179.27 REMARK 500 ASP A 225 21.17 -143.05 REMARK 500 TYR A 244 40.89 -160.81 REMARK 500 THR A 252 -75.99 -135.06 REMARK 500 ASN A 258 38.72 -79.34 REMARK 500 ASN A 291 -141.25 -151.06 REMARK 500 ALA A 331 18.86 -156.71 REMARK 500 PRO A 334 -17.34 -31.89 REMARK 500 ASP A 349 101.49 -168.20 REMARK 500 LYS A 351 127.73 -178.09 REMARK 500 THR A 367 91.06 -170.98 REMARK 500 ASP A 369 -10.49 65.56 REMARK 500 TYR A 393 -155.42 -100.02 REMARK 500 ASP A 395 9.59 52.78 REMARK 500 PRO A 405 104.45 -54.05 REMARK 500 SER A 406 -123.51 -120.25 REMARK 500 HIS A 410 -83.70 -87.57 REMARK 500 HIS A 411 -83.15 -70.06 REMARK 500 HIS A 412 66.40 -58.53 REMARK 500 HIS A 413 169.77 95.59 REMARK 500 SER A 415 171.62 -53.80 REMARK 500 ASN A 418 -154.28 -62.57 REMARK 500 ASP A 420 -167.96 -63.53 REMARK 500 ASP A 422 -74.50 -74.14 REMARK 500 PHE A 423 -60.76 76.00 REMARK 500 GLN A 450 73.75 -106.18 REMARK 500 TRP A 453 60.66 -113.62 REMARK 500 ASP A 454 111.40 57.12 REMARK 500 LYS A 455 8.43 52.55 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 599 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2020 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A2055 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A2078 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A2094 DISTANCE = 6.08 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 FTT A 1003 REMARK 610 FTT A 1005 REMARK 610 FTT A 1007 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1021 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 412 NE2 REMARK 620 2 PO4 A1016 O3 113.9 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QJQ RELATED DB: PDB REMARK 900 RELATED ID: 1QFF RELATED DB: PDB REMARK 900 RELATED ID: 1QFG RELATED DB: PDB REMARK 900 RELATED ID: 1BY3 RELATED DB: PDB REMARK 900 RELATED ID: 1BY5 RELATED DB: PDB REMARK 900 RELATED ID: 1FCP RELATED DB: PDB REMARK 900 RELATED ID: 2FCP RELATED DB: PDB DBREF 1QKC A 1 405 UNP P06971 FHUA_ECOLI 34 438 DBREF 1QKC A 417 725 UNP P06971 FHUA_ECOLI 439 747 SEQADV 1QKC SER A 406 UNP P06971 INSERTION SEQADV 1QKC SER A 407 UNP P06971 INSERTION SEQADV 1QKC HIS A 408 UNP P06971 INSERTION SEQADV 1QKC HIS A 409 UNP P06971 INSERTION SEQADV 1QKC HIS A 410 UNP P06971 INSERTION SEQADV 1QKC HIS A 411 UNP P06971 INSERTION SEQADV 1QKC HIS A 412 UNP P06971 INSERTION SEQADV 1QKC HIS A 413 UNP P06971 INSERTION SEQADV 1QKC GLY A 414 UNP P06971 INSERTION SEQADV 1QKC SER A 415 UNP P06971 INSERTION SEQADV 1QKC SER A 416 UNP P06971 INSERTION SEQRES 1 A 725 ALA VAL GLU PRO LYS GLU ASP THR ILE THR VAL THR ALA SEQRES 2 A 725 ALA PRO ALA PRO GLN GLU SER ALA TRP GLY PRO ALA ALA SEQRES 3 A 725 THR ILE ALA ALA ARG GLN SER ALA THR GLY THR LYS THR SEQRES 4 A 725 ASP THR PRO ILE GLN LYS VAL PRO GLN SER ILE SER VAL SEQRES 5 A 725 VAL THR ALA GLU GLU MET ALA LEU HIS GLN PRO LYS SER SEQRES 6 A 725 VAL LYS GLU ALA LEU SER TYR THR PRO GLY VAL SER VAL SEQRES 7 A 725 GLY THR ARG GLY ALA SER ASN THR TYR ASP HIS LEU ILE SEQRES 8 A 725 ILE ARG GLY PHE ALA ALA GLU GLY GLN SER GLN ASN ASN SEQRES 9 A 725 TYR LEU ASN GLY LEU LYS LEU GLN GLY ASN PHE TYR ASN SEQRES 10 A 725 ASP ALA VAL ILE ASP PRO TYR MET LEU GLU ARG ALA GLU SEQRES 11 A 725 ILE MET ARG GLY PRO VAL SER VAL LEU TYR GLY LYS SER SEQRES 12 A 725 SER PRO GLY GLY LEU LEU ASN MET VAL SER LYS ARG PRO SEQRES 13 A 725 THR THR GLU PRO LEU LYS GLU VAL GLN PHE LYS ALA GLY SEQRES 14 A 725 THR ASP SER LEU PHE GLN THR GLY PHE ASP PHE SER ASP SEQRES 15 A 725 SER LEU ASP ASP ASP GLY VAL TYR SER TYR ARG LEU THR SEQRES 16 A 725 GLY LEU ALA ARG SER ALA ASN ALA GLN GLN LYS GLY SER SEQRES 17 A 725 GLU GLU GLN ARG TYR ALA ILE ALA PRO ALA PHE THR TRP SEQRES 18 A 725 ARG PRO ASP ASP LYS THR ASN PHE THR PHE LEU SER TYR SEQRES 19 A 725 PHE GLN ASN GLU PRO GLU THR GLY TYR TYR GLY TRP LEU SEQRES 20 A 725 PRO LYS GLU GLY THR VAL GLU PRO LEU PRO ASN GLY LYS SEQRES 21 A 725 ARG LEU PRO THR ASP PHE ASN GLU GLY ALA LYS ASN ASN SEQRES 22 A 725 THR TYR SER ARG ASN GLU LYS MET VAL GLY TYR SER PHE SEQRES 23 A 725 ASP HIS GLU PHE ASN ASP THR PHE THR VAL ARG GLN ASN SEQRES 24 A 725 LEU ARG PHE ALA GLU ASN LYS THR SER GLN ASN SER VAL SEQRES 25 A 725 TYR GLY TYR GLY VAL CYS SER ASP PRO ALA ASN ALA TYR SEQRES 26 A 725 SER LYS GLN CYS ALA ALA LEU ALA PRO ALA ASP LYS GLY SEQRES 27 A 725 HIS TYR LEU ALA ARG LYS TYR VAL VAL ASP ASP GLU LYS SEQRES 28 A 725 LEU GLN ASN PHE SER VAL ASP THR GLN LEU GLN SER LYS SEQRES 29 A 725 PHE ALA THR GLY ASP ILE ASP HIS THR LEU LEU THR GLY SEQRES 30 A 725 VAL ASP PHE MET ARG MET ARG ASN ASP ILE ASN ALA TRP SEQRES 31 A 725 PHE GLY TYR ASP ASP SER VAL PRO LEU LEU ASN LEU TYR SEQRES 32 A 725 ASN PRO SER SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 33 A 725 VAL ASN THR ASP PHE ASP PHE ASN ALA LYS ASP PRO ALA SEQRES 34 A 725 ASN SER GLY PRO TYR ARG ILE LEU ASN LYS GLN LYS GLN SEQRES 35 A 725 THR GLY VAL TYR VAL GLN ASP GLN ALA GLN TRP ASP LYS SEQRES 36 A 725 VAL LEU VAL THR LEU GLY GLY ARG TYR ASP TRP ALA ASP SEQRES 37 A 725 GLN GLU SER LEU ASN ARG VAL ALA GLY THR THR ASP LYS SEQRES 38 A 725 ARG ASP ASP LYS GLN PHE THR TRP ARG GLY GLY VAL ASN SEQRES 39 A 725 TYR LEU PHE ASP ASN GLY VAL THR PRO TYR PHE SER TYR SEQRES 40 A 725 SER GLU SER PHE GLU PRO SER SER GLN VAL GLY LYS ASP SEQRES 41 A 725 GLY ASN ILE PHE ALA PRO SER LYS GLY LYS GLN TYR GLU SEQRES 42 A 725 VAL GLY VAL LYS TYR VAL PRO GLU ASP ARG PRO ILE VAL SEQRES 43 A 725 VAL THR GLY ALA VAL TYR ASN LEU THR LYS THR ASN ASN SEQRES 44 A 725 LEU MET ALA ASP PRO GLU GLY SER PHE PHE SER VAL GLU SEQRES 45 A 725 GLY GLY GLU ILE ARG ALA ARG GLY VAL GLU ILE GLU ALA SEQRES 46 A 725 LYS ALA ALA LEU SER ALA SER VAL ASN VAL VAL GLY SER SEQRES 47 A 725 TYR THR TYR THR ASP ALA GLU TYR THR THR ASP THR THR SEQRES 48 A 725 TYR LYS GLY ASN THR PRO ALA GLN VAL PRO LYS HIS MET SEQRES 49 A 725 ALA SER LEU TRP ALA ASP TYR THR PHE PHE ASP GLY PRO SEQRES 50 A 725 LEU SER GLY LEU THR LEU GLY THR GLY GLY ARG TYR THR SEQRES 51 A 725 GLY SER SER TYR GLY ASP PRO ALA ASN SER PHE LYS VAL SEQRES 52 A 725 GLY SER TYR THR VAL VAL ASP ALA LEU VAL ARG TYR ASP SEQRES 53 A 725 LEU ALA ARG VAL GLY MET ALA GLY SER ASN VAL ALA LEU SEQRES 54 A 725 HIS VAL ASN ASN LEU PHE ASP ARG GLU TYR VAL ALA SER SEQRES 55 A 725 CYS PHE ASN THR TYR GLY CYS PHE TRP GLY ALA GLU ARG SEQRES 56 A 725 GLN VAL VAL ALA THR ALA THR PHE ARG PHE HET PA1 B 1 11 HET GCN B 2 10 HET KDO B 3 15 HET GMH B 4 13 HET GMH B 5 13 HET GLC B 6 11 HET GLC B 7 11 HET GLC B 8 11 HET GLA B 9 11 HET GMH B 10 13 HET KDO B 11 15 HET FTT A1002 16 HET FTT A1003 7 HET FTT A1004 16 HET FTT A1005 13 HET FTT A1006 17 HET FTT A1007 15 HET DPO A1013 8 HET PO4 A1014 4 HET DPO A1015 8 HET PO4 A1016 4 HET NI A1021 1 HET ALB A1022 97 HETNAM PA1 2-AMINO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM GCN 2-AMINO-2,3-DIDEOXY-ALPHA-D-GLUCOYRANOSE HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETNAM GMH L-GLYCERO-ALPHA-D-MANNO-HEPTOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM FTT 3-HYDROXY-TETRADECANOIC ACID HETNAM DPO DIPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM NI NICKEL (II) ION HETNAM ALB DELTA-2-ALBOMYCIN A1 HETSYN PA1 ALPAH-D-GLUCOSAMINE; 2-AMINO-2-DEOXY-ALPHA-D-GLUCOSE; HETSYN 2 PA1 2-AMINO-2-DEOXY-D-GLUCOSE; 2-AMINO-2-DEOXY-GLUCOSE HETSYN GCN 3-DEOXY-D-GLUCOSAMINE; 3-DEOXY-ALPHA-D-GLUCOSAMINE HETSYN KDO 3-DEOXY-D-MANNO-OCT-2-ULOPYRANOSONIC ACID; 2-KETO-3- HETSYN 2 KDO DEOXY-D-MANNOOCTANOIC ACID; 3-DEOXY-ALPHA-D-MANNO-OCT- HETSYN 3 KDO 2-ULOSONIC ACID; 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID; HETSYN 4 KDO 3-DEOXY-MANNO-OCT-2-ULOSONIC ACID HETSYN GMH L-GLYCERO-ALPHA-D-MANNO-HEPTOSE; L-GLYCERO-D-MANNO- HETSYN 2 GMH HEPTOSE; L-GLYCERO-MANNO-HEPTOSE; L-GLYCERO-D-MANNO- HETSYN 3 GMH HEPTOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE HETSYN FTT 3-HYDROXY-MYRISTIC ACID FORMUL 2 PA1 C6 H13 N O5 FORMUL 2 GCN C6 H13 N O4 FORMUL 2 KDO 2(C8 H14 O8) FORMUL 2 GMH 3(C7 H14 O7) FORMUL 2 GLC 3(C6 H12 O6) FORMUL 2 GLA C6 H12 O6 FORMUL 3 FTT 6(C14 H28 O3) FORMUL 9 DPO 2(O7 P2 4-) FORMUL 10 PO4 2(O4 P 3-) FORMUL 13 NI NI 2+ FORMUL 14 ALB C37 H57 FE N12 O18 S FORMUL 15 HOH *332(H2 O) HELIX 1 1 GLN A 44 VAL A 46 5 3 HELIX 2 2 THR A 54 GLN A 62 1 9 HELIX 3 3 ALA A 97 SER A 101 5 5 HELIX 4 4 ASP A 122 TYR A 124 5 3 HELIX 5 5 VAL A 136 GLY A 141 1 6 HELIX 6 6 ASP A 320 SER A 326 5 7 HELIX 7 7 ASP A 336 GLY A 338 5 3 HELIX 8 8 ALA A 678 GLY A 681 5 4 SHEET 1 A 4 ILE A 50 VAL A 53 0 SHEET 2 A 4 LEU A 126 MET A 132 -1 N ILE A 131 O SER A 51 SHEET 3 A 4 LEU A 148 SER A 153 -1 N VAL A 152 O GLU A 127 SHEET 4 A 4 ASN A 104 LEU A 106 1 N TYR A 105 O LEU A 149 SHEET 1 B23 THR A 176 SER A 181 0 SHEET 2 B23 LEU A 161 PHE A 166 -1 N GLN A 165 O GLY A 177 SHEET 3 B23 GLN A 716 ARG A 724 -1 N PHE A 723 O VAL A 164 SHEET 4 B23 ASN A 686 ASN A 692 -1 N ASN A 692 O GLN A 716 SHEET 5 B23 TYR A 666 ASP A 676 -1 N TYR A 675 O VAL A 687 SHEET 6 B23 LEU A 641 THR A 650 -1 N THR A 650 O TYR A 666 SHEET 7 B23 HIS A 623 PHE A 633 -1 N PHE A 633 O LEU A 641 SHEET 8 B23 VAL A 593 THR A 608 -1 N THR A 600 O MET A 624 SHEET 9 B23 GLU A 575 ALA A 587 -1 N ALA A 587 O VAL A 595 SHEET 10 B23 VAL A 546 THR A 557 -1 N LYS A 556 O ILE A 576 SHEET 11 B23 SER A 527 TYR A 538 -1 N TYR A 538 O VAL A 547 SHEET 12 B23 VAL A 501 GLU A 512 -1 N GLU A 512 O SER A 527 SHEET 13 B23 THR A 478 LEU A 496 -1 N TYR A 495 O PRO A 503 SHEET 14 B23 VAL A 456 ASN A 473 -1 N ASN A 473 O THR A 478 SHEET 15 B23 SER A 431 GLN A 452 -1 N ALA A 451 O VAL A 458 SHEET 16 B23 ILE A 370 GLY A 392 -1 N PHE A 391 O GLY A 432 SHEET 17 B23 LEU A 341 THR A 367 -1 N THR A 367 O ILE A 370 SHEET 18 B23 PHE A 294 VAL A 317 -1 N GLY A 316 O ALA A 342 SHEET 19 B23 THR A 274 GLU A 289 -1 N HIS A 288 O VAL A 296 SHEET 20 B23 THR A 227 GLU A 238 -1 N GLU A 238 O ARG A 277 SHEET 21 B23 GLU A 209 TRP A 221 -1 N ILE A 215 O PHE A 235 SHEET 22 B23 TYR A 190 ASN A 202 -1 N ALA A 201 O GLU A 210 SHEET 23 B23 PHE A 174 PHE A 180 -1 N PHE A 180 O LEU A 194 SHEET 1 C 2 ALA A 218 TRP A 221 0 SHEET 2 C 2 PHE A 229 LEU A 232 -1 N PHE A 231 O PHE A 219 SHEET 1 D 2 ASN A 559 ALA A 562 0 SHEET 2 D 2 SER A 570 GLY A 574 -1 N GLY A 574 O ASN A 559 SHEET 1 E 2 VAL A 700 CYS A 703 0 SHEET 2 E 2 CYS A 709 TRP A 711 -1 N PHE A 710 O ALA A 701 SSBOND 1 CYS A 318 CYS A 329 1555 1555 2.06 SSBOND 2 CYS A 703 CYS A 709 1555 1555 2.04 LINK C1 FTT A1002 N2 PA1 B 1 1555 1555 1.32 LINK O1 FTT A1003 C3 PA1 B 1 1555 1555 1.44 LINK O3 FTT A1004 C1 FTT A1005 1555 1555 1.42 LINK C1 FTT A1004 N2 GCN B 2 1555 1555 1.32 LINK O3 FTT A1006 C1 FTT A1007 1555 1555 1.44 LINK O1 FTT A1006 C3 GCN B 2 1555 1555 1.46 LINK P1 DPO A1013 O1 PA1 B 1 1555 1555 1.47 LINK P PO4 A1014 O4 GCN B 2 1555 1555 1.58 LINK P1 DPO A1015 O4 GMH B 4 1555 1555 1.54 LINK P PO4 A1016 O4 GMH B 5 1555 1555 1.54 LINK O6 PA1 B 1 C1 GCN B 2 1555 1555 1.39 LINK O6 GCN B 2 C2 KDO B 3 1555 1555 1.39 LINK O5 KDO B 3 C1 GMH B 4 1555 1555 1.42 LINK O4 KDO B 3 C2 KDO B 11 1555 1555 1.39 LINK O3 GMH B 4 C1 GMH B 5 1555 1555 1.39 LINK O3 GMH B 5 C1 GLC B 6 1555 1555 1.41 LINK O7 GMH B 5 C1 GMH B 10 1555 1555 1.44 LINK O3 GLC B 6 C1 GLC B 7 1555 1555 1.40 LINK O6 GLC B 6 C1 GLA B 9 1555 1555 1.40 LINK O2 GLC B 7 C1 GLC B 8 1555 1555 1.42 LINK NE2 HIS A 412 NI NI A1021 1555 3664 2.57 LINK O3 PO4 A1016 NI NI A1021 1555 1555 2.34 CRYST1 171.800 171.800 86.350 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005821 0.003360 0.000000 0.00000 SCALE2 0.000000 0.006721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011581 0.00000