HEADER PEPTIDE RECOGNITION 25-AUG-99 1QLC TITLE SOLUTION STRUCTURE OF THE SECOND PDZ DOMAIN OF POSTSYNAPTIC DENSITY-95 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POSTSYNAPTIC DENSITY PROTEIN 95; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THE SECOND PDZ DOMAIN; COMPND 5 SYNONYM: PSD-95; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PEPTIDE RECOGNITION, PDZ DOMAIN, NEURONAL NITRIC OXIDE SYNTHASE, NMDA KEYWDS 2 RECEPTOR BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.TOCHIO,F.HUNG,M.LI,M.ZHANG REVDAT 3 15-MAY-24 1QLC 1 REMARK REVDAT 2 24-FEB-09 1QLC 1 VERSN REVDAT 1 06-FEB-00 1QLC 0 JRNL AUTH H.TOCHIO,F.HUNG,M.LI,D.S.BREDT,M.ZHANG JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF THE SECOND PDZ JRNL TITL 2 DOMAIN OF POSTSYNAPTIC DENSITY-95 JRNL REF J.MOL.BIOL. V. 295 225 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10623522 JRNL DOI 10.1006/JMBI.1999.3350 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TORSION ANGLE DYNAMICS SIMULATED REMARK 3 ANNEALING REFINEMENT REMARK 4 REMARK 4 1QLC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-AUG-99. REMARK 100 THE DEPOSITION ID IS D_1290004044. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 172 -168.20 -174.57 REMARK 500 1 ASN A 180 52.73 -110.39 REMARK 500 1 PRO A 184 81.47 -64.62 REMARK 500 1 ASP A 186 129.12 -173.41 REMARK 500 1 SER A 188 -160.90 -111.00 REMARK 500 1 GLU A 196 92.57 -39.53 REMARK 500 1 ALA A 199 -59.31 -148.46 REMARK 500 1 ALA A 214 155.76 163.83 REMARK 500 1 ASN A 216 -85.62 58.08 REMARK 500 1 SER A 217 14.32 -141.18 REMARK 500 1 LEU A 220 44.70 -102.31 REMARK 500 1 ASP A 222 33.38 -154.71 REMARK 500 1 THR A 235 -162.99 -66.01 REMARK 500 1 TYR A 236 -153.46 -131.02 REMARK 500 1 ASP A 237 -77.03 -43.19 REMARK 500 2 GLU A 156 -179.50 61.61 REMARK 500 2 LYS A 165 74.17 -68.90 REMARK 500 2 PHE A 172 -169.27 -170.58 REMARK 500 2 ASN A 180 57.58 -117.06 REMARK 500 2 ASP A 186 123.87 -172.13 REMARK 500 2 SER A 188 -166.56 -111.07 REMARK 500 2 GLU A 196 98.22 -38.52 REMARK 500 2 ALA A 199 -58.63 -137.56 REMARK 500 2 ALA A 214 152.06 166.47 REMARK 500 2 ASN A 216 -84.51 57.14 REMARK 500 2 LEU A 220 50.60 -119.37 REMARK 500 2 ASP A 222 30.68 -159.90 REMARK 500 2 THR A 235 -166.94 -66.09 REMARK 500 2 TYR A 236 -150.14 -138.45 REMARK 500 2 ASP A 237 -80.82 -44.40 REMARK 500 2 SER A 247 153.22 60.99 REMARK 500 2 ASN A 248 78.47 -114.74 REMARK 500 3 PHE A 172 -166.04 -174.52 REMARK 500 3 ASN A 180 55.23 -112.88 REMARK 500 3 PRO A 184 78.98 -69.69 REMARK 500 3 ASP A 186 128.34 -170.11 REMARK 500 3 GLU A 196 95.27 -36.39 REMARK 500 3 ALA A 199 -57.62 -133.44 REMARK 500 3 ALA A 214 151.49 166.31 REMARK 500 3 ASN A 216 -85.50 59.29 REMARK 500 3 SER A 217 13.49 -141.98 REMARK 500 3 LEU A 220 48.01 -108.97 REMARK 500 3 ASP A 222 32.72 -162.28 REMARK 500 3 THR A 235 -166.87 -70.38 REMARK 500 3 TYR A 236 -150.50 -138.94 REMARK 500 3 ASP A 237 -81.36 -43.42 REMARK 500 4 GLU A 156 -176.38 -62.00 REMARK 500 4 PHE A 172 -171.13 -176.65 REMARK 500 4 ASN A 180 56.44 -118.09 REMARK 500 4 ASP A 186 131.22 -172.68 REMARK 500 REMARK 500 THIS ENTRY HAS 284 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BE9 RELATED DB: PDB REMARK 900 THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95 IN COMPLEX REMARK 900 WITH A C-TERMINAL PEPTIDE DERIVED FROM CRIPT. REMARK 900 RELATED ID: 1BFE RELATED DB: PDB REMARK 900 THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95 DBREF 1QLC A 155 249 UNP P31016 SP90_RAT 155 249 SEQRES 1 A 95 ALA GLU LYS VAL MET GLU ILE LYS LEU ILE LYS GLY PRO SEQRES 2 A 95 LYS GLY LEU GLY PHE SER ILE ALA GLY GLY VAL GLY ASN SEQRES 3 A 95 GLN HIS ILE PRO GLY ASP ASN SER ILE TYR VAL THR LYS SEQRES 4 A 95 ILE ILE GLU GLY GLY ALA ALA HIS LYS ASP GLY ARG LEU SEQRES 5 A 95 GLN ILE GLY ASP LYS ILE LEU ALA VAL ASN SER VAL GLY SEQRES 6 A 95 LEU GLU ASP VAL MET HIS GLU ASP ALA VAL ALA ALA LEU SEQRES 7 A 95 LYS ASN THR TYR ASP VAL VAL TYR LEU LYS VAL ALA LYS SEQRES 8 A 95 PRO SER ASN ALA HELIX 1 1 ALA A 199 ARG A 205 1 7 HELIX 2 2 MET A 224 ASN A 234 1 11 SHEET 1 A 3 LYS A 157 ILE A 164 0 SHEET 2 A 3 VAL A 238 LYS A 245 -1 N LYS A 245 O LYS A 157 SHEET 3 A 3 ILE A 212 VAL A 215 -1 N ALA A 214 O LYS A 242 SHEET 1 B 2 PHE A 172 GLY A 176 0 SHEET 2 B 2 ILE A 189 ILE A 194 -1 N LYS A 193 O SER A 173 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1