HEADER PENICILLIN-BINDING PROTEIN 28-SEP-99 1QME TITLE PENICILLIN-BINDING PROTEIN 2X (PBP-2X) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN 2X; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 49-750; COMPND 5 SYNONYM: PBP-2X, PBP2X; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 GENE: PBP2X; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI MC1061; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1211845; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS PENICILLIN-BINDING PROTEIN, PEPTIDOGLYCAN SYNTHESIS, RESISTANCE, CELL KEYWDS 2 WALL, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR E.J.GORDON,N.MOUZ,E.DUEE,O.DIDEBERG REVDAT 5 13-DEC-23 1QME 1 REMARK REVDAT 4 24-OCT-18 1QME 1 SOURCE REVDAT 3 30-JAN-13 1QME 1 HEADER COMPND SOURCE KEYWDS REVDAT 3 2 1 JRNL REMARK VERSN HET REVDAT 3 3 1 FORMUL SITE HETATM MASTER REVDAT 2 24-FEB-09 1QME 1 VERSN REVDAT 1 25-MAY-00 1QME 0 JRNL AUTH E.J.GORDON,N.MOUZ,E.DUEE,O.DIDEBERG JRNL TITL THE CRYSTAL STRUCTURE OF THE PENICILLIN-BINDING PROTEIN 2X JRNL TITL 2 FROM STREPTOCOCCUS PNEUMONIAE AND ITS ACYL-ENZYME FORM: JRNL TITL 3 IMPLICATION IN DRUG RESISTANCE. JRNL REF J.MOL.BIOL. V. 299 477 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10860753 JRNL DOI 10.1006/JMBI.2000.3740 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.PARES,N.MOUZ,Y.PETILLOT,R.HAKENBECK,O.DIDEBERG REMARK 1 TITL X-RAY STRUCTURE OF STREPTOCOCCUS PNEUMONIAE PBP2X, A PRIMARY REMARK 1 TITL 2 PENICILLIN TARGET ENZYME REMARK 1 REF NAT.STRUCT.BIOL. V. 3 284 1996 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 8605631 REMARK 1 DOI 10.1038/NSB0396-284 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.CHARLIER,G.BUISSON,O.DIDEBERG,J.WIERENGA,W.KECK,G.LAIBLE, REMARK 1 AUTH 2 R.HAKENBECK REMARK 1 TITL CRYSTALLIZATION OF A GENETICALLY ENGINEERED WATER-SOLUBLE REMARK 1 TITL 2 PRIMARY PENICILLIN TARGET ENZYME. THE HIGH MOLECULAR MASS REMARK 1 TITL 3 PBP2X OF STREPTOCOCCUS PNEUMONIAE REMARK 1 REF J.MOL.BIOL. V. 232 1007 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 8355266 REMARK 1 DOI 10.1006/JMBI.1993.1452 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3273002.600 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 42234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4261 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 29.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2084 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 229 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4256 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.19000 REMARK 3 B22 (A**2) : 3.19000 REMARK 3 B33 (A**2) : -6.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.120 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.200 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.780 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.930 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : 2XC REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : 2XC REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED. MEMBRANE REMARK 3 ANCHOR HAS BEEN DELETED FROM CONSTRUCT. PROTEIN CRYSTALLISED REMARK 3 CORRESPONDS TO RESIDUES 49-750. ALSO, RESIDUES 93-182, 233- 253, REMARK 3 621-631 ARE DISORDERED. REMARK 4 REMARK 4 1QME COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-99. REMARK 100 THE DEPOSITION ID IS D_1290002986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-95 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42234 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 0.3 REMARK 200 STARTING MODEL: PDB ENTRY 1PMD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 4.5, 1.0-1.3M REMARK 280 AMMONIUM SULFATE, PH 4.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.70500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 64.95500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 64.95500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.35250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 64.95500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 64.95500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 106.05750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 64.95500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.95500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.35250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 64.95500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.95500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 106.05750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.70500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 49 REMARK 465 THR A 50 REMARK 465 GLY A 51 REMARK 465 THR A 52 REMARK 465 ARG A 53 REMARK 465 PHE A 54 REMARK 465 GLY A 55 REMARK 465 THR A 56 REMARK 465 ASP A 57 REMARK 465 LEU A 58 REMARK 465 ALA A 59 REMARK 465 LYS A 60 REMARK 465 GLU A 61 REMARK 465 ALA A 62 REMARK 465 LYS A 63 REMARK 465 LYS A 64 REMARK 465 VAL A 65 REMARK 465 HIS A 66 REMARK 465 GLN A 67 REMARK 465 THR A 68 REMARK 465 THR A 69 REMARK 465 ARG A 70 REMARK 465 SER A 93 REMARK 465 TYR A 94 REMARK 465 ASN A 95 REMARK 465 VAL A 96 REMARK 465 TYR A 97 REMARK 465 ALA A 98 REMARK 465 VAL A 99 REMARK 465 ILE A 100 REMARK 465 ASP A 101 REMARK 465 GLU A 102 REMARK 465 ASN A 103 REMARK 465 TYR A 104 REMARK 465 LYS A 105 REMARK 465 SER A 106 REMARK 465 ALA A 107 REMARK 465 THR A 108 REMARK 465 GLY A 109 REMARK 465 LYS A 110 REMARK 465 ILE A 111 REMARK 465 LEU A 112 REMARK 465 TYR A 113 REMARK 465 VAL A 114 REMARK 465 GLU A 115 REMARK 465 LYS A 116 REMARK 465 THR A 117 REMARK 465 GLN A 118 REMARK 465 PHE A 119 REMARK 465 ASN A 120 REMARK 465 LYS A 121 REMARK 465 VAL A 122 REMARK 465 ALA A 123 REMARK 465 GLU A 124 REMARK 465 VAL A 125 REMARK 465 PHE A 126 REMARK 465 HIS A 127 REMARK 465 LYS A 128 REMARK 465 TYR A 129 REMARK 465 LEU A 130 REMARK 465 ASP A 131 REMARK 465 MET A 132 REMARK 465 GLU A 133 REMARK 465 GLU A 134 REMARK 465 SER A 135 REMARK 465 TYR A 136 REMARK 465 VAL A 137 REMARK 465 ARG A 138 REMARK 465 GLU A 139 REMARK 465 GLN A 140 REMARK 465 LEU A 141 REMARK 465 SER A 142 REMARK 465 GLN A 143 REMARK 465 PRO A 144 REMARK 465 ASN A 145 REMARK 465 LEU A 146 REMARK 465 LYS A 147 REMARK 465 GLN A 148 REMARK 465 VAL A 149 REMARK 465 SER A 150 REMARK 465 PHE A 151 REMARK 465 GLY A 152 REMARK 465 ALA A 153 REMARK 465 LYS A 154 REMARK 465 GLY A 155 REMARK 465 ASN A 156 REMARK 465 GLY A 157 REMARK 465 ILE A 158 REMARK 465 THR A 159 REMARK 465 TYR A 160 REMARK 465 ALA A 161 REMARK 465 ASN A 162 REMARK 465 MET A 163 REMARK 465 MET A 164 REMARK 465 SER A 165 REMARK 465 ILE A 166 REMARK 465 LYS A 167 REMARK 465 LYS A 168 REMARK 465 GLU A 169 REMARK 465 LEU A 170 REMARK 465 GLU A 171 REMARK 465 ALA A 172 REMARK 465 ALA A 173 REMARK 465 GLU A 174 REMARK 465 VAL A 175 REMARK 465 LYS A 176 REMARK 465 GLY A 177 REMARK 465 ILE A 178 REMARK 465 ASP A 179 REMARK 465 PHE A 180 REMARK 465 THR A 181 REMARK 465 THR A 182 REMARK 465 ILE A 233 REMARK 465 ILE A 234 REMARK 465 THR A 235 REMARK 465 TYR A 236 REMARK 465 GLU A 237 REMARK 465 LYS A 238 REMARK 465 ASP A 239 REMARK 465 ARG A 240 REMARK 465 LEU A 241 REMARK 465 GLY A 242 REMARK 465 ASN A 243 REMARK 465 ILE A 244 REMARK 465 VAL A 245 REMARK 465 PRO A 246 REMARK 465 GLY A 247 REMARK 465 THR A 248 REMARK 465 GLU A 249 REMARK 465 GLN A 250 REMARK 465 VAL A 251 REMARK 465 SER A 252 REMARK 465 GLN A 253 REMARK 465 GLN A 621 REMARK 465 THR A 622 REMARK 465 THR A 623 REMARK 465 ALA A 624 REMARK 465 LYS A 625 REMARK 465 ALA A 626 REMARK 465 LEU A 627 REMARK 465 GLU A 628 REMARK 465 GLN A 629 REMARK 465 VAL A 630 REMARK 465 SER A 631 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 208 15.85 -67.01 REMARK 500 THR A 309 -159.38 -133.72 REMARK 500 ALA A 367 90.31 37.81 REMARK 500 ASP A 368 -20.77 67.05 REMARK 500 LYS A 547 118.54 -168.75 REMARK 500 LYS A 557 3.07 -60.05 REMARK 500 ASN A 558 49.05 -177.44 REMARK 500 LEU A 565 154.43 -47.76 REMARK 500 ASP A 567 48.24 -83.83 REMARK 500 SER A 596 148.21 -171.59 REMARK 500 LEU A 618 126.30 -34.50 REMARK 500 PRO A 639 -175.14 -68.04 REMARK 500 ASN A 735 -1.57 81.68 REMARK 500 LYS A 739 -71.34 -25.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PMD RELATED DB: PDB REMARK 900 PENICILLIN-BINDING PROTEIN 2X (PBP-2X) REMARK 900 RELATED ID: 1QMF RELATED DB: PDB REMARK 900 PENICILLIN-BINDING PROTEIN 2X (PBP-2X) ACYL-ENZYME COMPLEX DBREF 1QME A 49 750 UNP P14677 PBPX_STRPN 49 750 SEQRES 1 A 702 GLY THR GLY THR ARG PHE GLY THR ASP LEU ALA LYS GLU SEQRES 2 A 702 ALA LYS LYS VAL HIS GLN THR THR ARG THR VAL PRO ALA SEQRES 3 A 702 LYS ARG GLY THR ILE TYR ASP ARG ASN GLY VAL PRO ILE SEQRES 4 A 702 ALA GLU ASP ALA THR SER TYR ASN VAL TYR ALA VAL ILE SEQRES 5 A 702 ASP GLU ASN TYR LYS SER ALA THR GLY LYS ILE LEU TYR SEQRES 6 A 702 VAL GLU LYS THR GLN PHE ASN LYS VAL ALA GLU VAL PHE SEQRES 7 A 702 HIS LYS TYR LEU ASP MET GLU GLU SER TYR VAL ARG GLU SEQRES 8 A 702 GLN LEU SER GLN PRO ASN LEU LYS GLN VAL SER PHE GLY SEQRES 9 A 702 ALA LYS GLY ASN GLY ILE THR TYR ALA ASN MET MET SER SEQRES 10 A 702 ILE LYS LYS GLU LEU GLU ALA ALA GLU VAL LYS GLY ILE SEQRES 11 A 702 ASP PHE THR THR SER PRO ASN ARG SER TYR PRO ASN GLY SEQRES 12 A 702 GLN PHE ALA SER SER PHE ILE GLY LEU ALA GLN LEU HIS SEQRES 13 A 702 GLU ASN GLU ASP GLY SER LYS SER LEU LEU GLY THR SER SEQRES 14 A 702 GLY MET GLU SER SER LEU ASN SER ILE LEU ALA GLY THR SEQRES 15 A 702 ASP GLY ILE ILE THR TYR GLU LYS ASP ARG LEU GLY ASN SEQRES 16 A 702 ILE VAL PRO GLY THR GLU GLN VAL SER GLN ARG THR MET SEQRES 17 A 702 ASP GLY LYS ASP VAL TYR THR THR ILE SER SER PRO LEU SEQRES 18 A 702 GLN SER PHE MET GLU THR GLN MET ASP ALA PHE GLN GLU SEQRES 19 A 702 LYS VAL LYS GLY LYS TYR MET THR ALA THR LEU VAL SER SEQRES 20 A 702 ALA LYS THR GLY GLU ILE LEU ALA THR THR GLN ARG PRO SEQRES 21 A 702 THR PHE ASP ALA ASP THR LYS GLU GLY ILE THR GLU ASP SEQRES 22 A 702 PHE VAL TRP ARG ASP ILE LEU TYR GLN SER ASN TYR GLU SEQRES 23 A 702 PRO GLY SER THR MET LYS VAL MET MET LEU ALA ALA ALA SEQRES 24 A 702 ILE ASP ASN ASN THR PHE PRO GLY GLY GLU VAL PHE ASN SEQRES 25 A 702 SER SER GLU LEU LYS ILE ALA ASP ALA THR ILE ARG ASP SEQRES 26 A 702 TRP ASP VAL ASN GLU GLY LEU THR GLY GLY ARG MET MET SEQRES 27 A 702 THR PHE SER GLN GLY PHE ALA HIS SER SER ASN VAL GLY SEQRES 28 A 702 MET THR LEU LEU GLU GLN LYS MET GLY ASP ALA THR TRP SEQRES 29 A 702 LEU ASP TYR LEU ASN ARG PHE LYS PHE GLY VAL PRO THR SEQRES 30 A 702 ARG PHE GLY LEU THR ASP GLU TYR ALA GLY GLN LEU PRO SEQRES 31 A 702 ALA ASP ASN ILE VAL ASN ILE ALA GLN SER SER PHE GLY SEQRES 32 A 702 GLN GLY ILE SER VAL THR GLN THR GLN MET ILE ARG ALA SEQRES 33 A 702 PHE THR ALA ILE ALA ASN ASP GLY VAL MET LEU GLU PRO SEQRES 34 A 702 LYS PHE ILE SER ALA ILE TYR ASP PRO ASN ASP GLN THR SEQRES 35 A 702 ALA ARG LYS SER GLN LYS GLU ILE VAL GLY ASN PRO VAL SEQRES 36 A 702 SER LYS ASP ALA ALA SER LEU THR ARG THR ASN MET VAL SEQRES 37 A 702 LEU VAL GLY THR ASP PRO VAL TYR GLY THR MET TYR ASN SEQRES 38 A 702 HIS SER THR GLY LYS PRO THR VAL THR VAL PRO GLY GLN SEQRES 39 A 702 ASN VAL ALA LEU LYS SER GLY THR ALA GLN ILE ALA ASP SEQRES 40 A 702 GLU LYS ASN GLY GLY TYR LEU VAL GLY LEU THR ASP TYR SEQRES 41 A 702 ILE PHE SER ALA VAL SER MET SER PRO ALA GLU ASN PRO SEQRES 42 A 702 ASP PHE ILE LEU TYR VAL THR VAL GLN GLN PRO GLU HIS SEQRES 43 A 702 TYR SER GLY ILE GLN LEU GLY GLU PHE ALA ASN PRO ILE SEQRES 44 A 702 LEU GLU ARG ALA SER ALA MET LYS ASP SER LEU ASN LEU SEQRES 45 A 702 GLN THR THR ALA LYS ALA LEU GLU GLN VAL SER GLN GLN SEQRES 46 A 702 SER PRO TYR PRO MET PRO SER VAL LYS ASP ILE SER PRO SEQRES 47 A 702 GLY ASP LEU ALA GLU GLU LEU ARG ARG ASN LEU VAL GLN SEQRES 48 A 702 PRO ILE VAL VAL GLY THR GLY THR LYS ILE LYS ASN SER SEQRES 49 A 702 SER ALA GLU GLU GLY LYS ASN LEU ALA PRO ASN GLN GLN SEQRES 50 A 702 VAL LEU ILE LEU SER ASP LYS ALA GLU GLU VAL PRO ASP SEQRES 51 A 702 MET TYR GLY TRP THR LYS GLU THR ALA GLU THR LEU ALA SEQRES 52 A 702 LYS TRP LEU ASN ILE GLU LEU GLU PHE GLN GLY SER GLY SEQRES 53 A 702 SER THR VAL GLN LYS GLN ASP VAL ARG ALA ASN THR ALA SEQRES 54 A 702 ILE LYS ASP ILE LYS LYS ILE THR LEU THR LEU GLY ASP HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 HOH *360(H2 O) HELIX 1 1 ALA A 194 GLY A 199 1 6 HELIX 2 2 SER A 217 LEU A 223 1 7 HELIX 3 3 LEU A 223 GLY A 229 1 7 HELIX 4 4 SER A 266 LYS A 285 1 20 HELIX 5 5 PRO A 335 THR A 338 5 4 HELIX 6 6 MET A 339 ASN A 350 1 12 HELIX 7 7 ASP A 373 GLU A 378 1 6 HELIX 8 8 PHE A 388 HIS A 394 1 7 HELIX 9 9 SER A 396 GLY A 408 1 13 HELIX 10 10 GLY A 408 PHE A 419 1 12 HELIX 11 11 ASN A 441 SER A 448 1 8 HELIX 12 12 SER A 449 GLY A 451 5 3 HELIX 13 13 THR A 457 ASN A 470 1 14 HELIX 14 14 SER A 504 ASP A 521 1 18 HELIX 15 15 ASP A 555 GLY A 559 5 5 HELIX 16 16 SER A 596 LEU A 618 1 23 HELIX 17 17 SER A 645 ARG A 655 1 11 HELIX 18 18 THR A 703 ASN A 715 1 13 SHEET 1 A 2 GLU A 89 ALA A 91 0 SHEET 2 A 2 ASN A 185 SER A 187 -1 N SER A 187 O GLU A 89 SHEET 1 B 2 ALA A 201 GLU A 205 0 SHEET 2 B 2 LYS A 211 GLY A 215 -1 N LEU A 214 O GLN A 202 SHEET 1 C 5 ALA A 545 GLN A 552 0 SHEET 2 C 5 TYR A 568 SER A 576 -1 N MET A 575 O ALA A 545 SHEET 3 C 5 PHE A 583 GLN A 590 -1 N VAL A 589 O PHE A 570 SHEET 4 C 5 TYR A 288 SER A 295 -1 N VAL A 294 O ILE A 584 SHEET 5 C 5 ILE A 301 ARG A 307 -1 N ARG A 307 O MET A 289 SHEET 1 D 2 VAL A 358 ASN A 360 0 SHEET 2 D 2 MET A 385 THR A 387 -1 N MET A 386 O PHE A 359 SHEET 1 E 2 LEU A 364 ILE A 366 0 SHEET 2 E 2 ALA A 369 ILE A 371 -1 N ILE A 371 O LEU A 364 SHEET 1 F 3 THR A 490 LYS A 493 0 SHEET 2 F 3 ILE A 480 ASP A 485 -1 N ASP A 485 O THR A 490 SHEET 3 F 3 ASP A 260 THR A 263 -1 N TYR A 262 O SER A 481 SHEET 1 G 3 GLN A 659 VAL A 663 0 SHEET 2 G 3 GLN A 685 SER A 690 1 N VAL A 686 O GLN A 659 SHEET 3 G 3 ILE A 669 SER A 672 -1 N ASN A 671 O LEU A 689 SHEET 1 H 3 GLU A 717 GLN A 721 0 SHEET 2 H 3 LYS A 743 GLY A 749 1 N ILE A 744 O GLU A 717 SHEET 3 H 3 THR A 726 GLN A 730 -1 N LYS A 729 O THR A 747 CISPEP 1 ARG A 307 PRO A 308 0 0.26 CISPEP 2 SER A 576 PRO A 577 0 -0.28 SITE 1 AC1 6 SER A 337 SER A 395 SER A 548 GLY A 549 SITE 2 AC1 6 THR A 550 HOH A2358 SITE 1 AC2 3 ARG A 384 TYR A 524 HOH A2359 SITE 1 AC3 5 ASN A 470 ASP A 471 VAL A 473 LYS A 496 SITE 2 AC3 5 TYR A 700 CRYST1 129.910 129.910 141.410 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007698 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007072 0.00000