HEADER HYDROLASE 08-OCT-99 1QMY TITLE FMDV LEADER PROTEASE (LBSHORT-C51A-C133S) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: LEADER PROTEASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: APHTHOVIRUS O; SOURCE 3 ORGANISM_COMMON: FOOT-AND-MOUTH DISEASE VIRUS, FMDV; SOURCE 4 ORGANISM_TAXID: 12118; SOURCE 5 STRAIN: O1K; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HYDROLASE, SULFHYDRYL PROTEINASE, PICORNAVIRAL PROTEINASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GUARNE,J.TORMO,W.GLASER,T.SKERN,I.FITA REVDAT 4 24-JUL-19 1QMY 1 REMARK REVDAT 3 24-FEB-09 1QMY 1 VERSN REVDAT 2 18-SEP-01 1QMY 1 JRNL REVDAT 1 12-OCT-00 1QMY 0 JRNL AUTH A.GUARNE,B.HAMPOELZ,W.GLASER,X.CARPENA,J.TORMO,I.FITA, JRNL AUTH 2 T.SKERN JRNL TITL STRUCTURE AND BIOCHEMICAL FEATURES DISTINGUISH THE JRNL TITL 2 FOOT-AND-MOUTH DISEASE VIRUS LEADER PROTEINASE FROM OTHER JRNL TITL 3 PAPAIN-LIKE ENZYMES JRNL REF J.MOL.BIOL. V. 302 1227 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 11183785 JRNL DOI 10.1006/JMBI.2000.4115 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1253445.970 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 42222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2977 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6419 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 506 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3762 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 419 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.20000 REMARK 3 B22 (A**2) : 2.41000 REMARK 3 B33 (A**2) : 1.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.110 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.170 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.000 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.950 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.990 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 54.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ETH.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ETH.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-OCT-99. REMARK 100 THE DEPOSITION ID IS D_1290004207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-99 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8469 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42246 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03200 REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.21500 REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 0.9 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.2 M MG ACETATE, 0.1 M REMARK 280 NA CACODYLATE, PH 6.5, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.37550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 185 REMARK 465 GLU A 186 REMARK 465 PRO A 187 REMARK 465 LEU A 188 REMARK 465 ASN A 189 REMARK 465 GLY A 190 REMARK 465 GLU A 191 REMARK 465 TRP A 192 REMARK 465 LYS A 193 REMARK 465 ALA A 194 REMARK 465 LYS A 195 REMARK 465 GLN B 185 REMARK 465 GLU B 186 REMARK 465 PRO B 187 REMARK 465 LEU B 188 REMARK 465 ASN B 189 REMARK 465 GLY B 190 REMARK 465 GLU B 191 REMARK 465 TRP B 192 REMARK 465 LYS B 193 REMARK 465 ALA B 194 REMARK 465 LYS B 195 REMARK 465 GLN C 185 REMARK 465 GLU C 186 REMARK 465 PRO C 187 REMARK 465 LEU C 188 REMARK 465 ASN C 189 REMARK 465 GLY C 190 REMARK 465 GLU C 191 REMARK 465 TRP C 192 REMARK 465 LYS C 193 REMARK 465 ALA C 194 REMARK 465 LYS C 195 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY C 145 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 147 CG CD OE1 OE2 REMARK 480 GLN B 146 CB CG CD OE1 NE2 REMARK 480 GLU B 147 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2037 O HOH B 2010 1455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 121 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 146 -3.94 65.51 REMARK 500 ASP A 164 -114.62 55.41 REMARK 500 TRP A 170 118.76 -169.07 REMARK 500 ASP B 128 20.73 -143.83 REMARK 500 GLU B 147 -68.66 -151.06 REMARK 500 ASP B 164 -100.92 58.68 REMARK 500 TRP B 170 118.00 -167.55 REMARK 500 ASP C 128 23.13 -142.99 REMARK 500 GLN C 146 -133.60 78.33 REMARK 500 GLU C 147 48.97 -86.47 REMARK 500 ASP C 164 -102.79 49.62 REMARK 500 TRP C 170 119.50 -164.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2012 DISTANCE = 7.12 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1185 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1186 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QOL RELATED DB: PDB REMARK 900 STRUCTURE OF THE FMDV LEADER PROTEASE REMARK 900 RELATED ID: 1QQP RELATED DB: PDB REMARK 900 FOOT-AND-MOUTH DISEASE VIRUS/ OLIGOSACCHARIDE RECEPTOR COMPLEX. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SWISSPROT ENTRY POLG_FMDVO REFERS TO A GENOME POLYPROTEIN, REMARK 999 AND THE PROTEASE (EC 3.4.22.-) LISTED IS FOR THE RESIDUES REMARK 999 1650 TO 1862. THE PROTEASE STUDIED HERE WAS FOUND IN THE REMARK 999 RESIDUES 29 TO 195 THAT ARE LISTED IN SWISSPROT AS A REMARK 999 NONSTRUCTURAL PROTEIN P20A. DBREF 1QMY A 29 195 UNP P03305 POLG_FMDVO 29 195 DBREF 1QMY B 29 195 UNP P03305 POLG_FMDVO 29 195 DBREF 1QMY C 29 195 UNP P03305 POLG_FMDVO 29 195 SEQADV 1QMY ALA A 51 UNP P03305 CYS 51 ENGINEERED MUTATION SEQADV 1QMY ALA B 51 UNP P03305 CYS 51 ENGINEERED MUTATION SEQADV 1QMY ALA C 51 UNP P03305 CYS 51 ENGINEERED MUTATION SEQADV 1QMY SER A 133 UNP P03305 CYS 133 ENGINEERED MUTATION SEQADV 1QMY SER B 133 UNP P03305 CYS 133 ENGINEERED MUTATION SEQADV 1QMY SER C 133 UNP P03305 CYS 133 ENGINEERED MUTATION SEQADV 1QMY VAL A 126 UNP P03305 MET 126 ENGINEERED MUTATION SEQADV 1QMY VAL B 126 UNP P03305 MET 126 ENGINEERED MUTATION SEQADV 1QMY VAL C 126 UNP P03305 MET 126 ENGINEERED MUTATION SEQRES 1 A 167 MET GLU LEU THR LEU TYR ASN GLY GLU LYS LYS THR PHE SEQRES 2 A 167 TYR SER ARG PRO ASN ASN HIS ASP ASN ALA TRP LEU ASN SEQRES 3 A 167 ALA ILE LEU GLN LEU PHE ARG TYR VAL GLU GLU PRO PHE SEQRES 4 A 167 PHE ASP TRP VAL TYR SER SER PRO GLU ASN LEU THR LEU SEQRES 5 A 167 GLU ALA ILE LYS GLN LEU GLU ASP LEU THR GLY LEU GLU SEQRES 6 A 167 LEU HIS GLU GLY GLY PRO PRO ALA LEU VAL ILE TRP ASN SEQRES 7 A 167 ILE LYS HIS LEU LEU HIS THR GLY ILE GLY THR ALA SER SEQRES 8 A 167 ARG PRO SER GLU VAL CYS VAL VAL ASP GLY THR ASP MET SEQRES 9 A 167 SER LEU ALA ASP PHE HIS ALA GLY ILE PHE LEU LYS GLY SEQRES 10 A 167 GLN GLU HIS ALA VAL PHE ALA CYS VAL THR SER ASN GLY SEQRES 11 A 167 TRP TYR ALA ILE ASP ASP GLU ASP PHE TYR PRO TRP THR SEQRES 12 A 167 PRO ASP PRO SER ASP VAL LEU VAL PHE VAL PRO TYR ASP SEQRES 13 A 167 GLN GLU PRO LEU ASN GLY GLU TRP LYS ALA LYS SEQRES 1 B 167 MET GLU LEU THR LEU TYR ASN GLY GLU LYS LYS THR PHE SEQRES 2 B 167 TYR SER ARG PRO ASN ASN HIS ASP ASN ALA TRP LEU ASN SEQRES 3 B 167 ALA ILE LEU GLN LEU PHE ARG TYR VAL GLU GLU PRO PHE SEQRES 4 B 167 PHE ASP TRP VAL TYR SER SER PRO GLU ASN LEU THR LEU SEQRES 5 B 167 GLU ALA ILE LYS GLN LEU GLU ASP LEU THR GLY LEU GLU SEQRES 6 B 167 LEU HIS GLU GLY GLY PRO PRO ALA LEU VAL ILE TRP ASN SEQRES 7 B 167 ILE LYS HIS LEU LEU HIS THR GLY ILE GLY THR ALA SER SEQRES 8 B 167 ARG PRO SER GLU VAL CYS VAL VAL ASP GLY THR ASP MET SEQRES 9 B 167 SER LEU ALA ASP PHE HIS ALA GLY ILE PHE LEU LYS GLY SEQRES 10 B 167 GLN GLU HIS ALA VAL PHE ALA CYS VAL THR SER ASN GLY SEQRES 11 B 167 TRP TYR ALA ILE ASP ASP GLU ASP PHE TYR PRO TRP THR SEQRES 12 B 167 PRO ASP PRO SER ASP VAL LEU VAL PHE VAL PRO TYR ASP SEQRES 13 B 167 GLN GLU PRO LEU ASN GLY GLU TRP LYS ALA LYS SEQRES 1 C 167 MET GLU LEU THR LEU TYR ASN GLY GLU LYS LYS THR PHE SEQRES 2 C 167 TYR SER ARG PRO ASN ASN HIS ASP ASN ALA TRP LEU ASN SEQRES 3 C 167 ALA ILE LEU GLN LEU PHE ARG TYR VAL GLU GLU PRO PHE SEQRES 4 C 167 PHE ASP TRP VAL TYR SER SER PRO GLU ASN LEU THR LEU SEQRES 5 C 167 GLU ALA ILE LYS GLN LEU GLU ASP LEU THR GLY LEU GLU SEQRES 6 C 167 LEU HIS GLU GLY GLY PRO PRO ALA LEU VAL ILE TRP ASN SEQRES 7 C 167 ILE LYS HIS LEU LEU HIS THR GLY ILE GLY THR ALA SER SEQRES 8 C 167 ARG PRO SER GLU VAL CYS VAL VAL ASP GLY THR ASP MET SEQRES 9 C 167 SER LEU ALA ASP PHE HIS ALA GLY ILE PHE LEU LYS GLY SEQRES 10 C 167 GLN GLU HIS ALA VAL PHE ALA CYS VAL THR SER ASN GLY SEQRES 11 C 167 TRP TYR ALA ILE ASP ASP GLU ASP PHE TYR PRO TRP THR SEQRES 12 C 167 PRO ASP PRO SER ASP VAL LEU VAL PHE VAL PRO TYR ASP SEQRES 13 C 167 GLN GLU PRO LEU ASN GLY GLU TRP LYS ALA LYS HET EDO B1185 4 HET EDO B1186 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *419(H2 O) HELIX 1 A1 ASN A 50 GLU A 64 1 15 HELIX 2 A3 PHE A 68 SER A 73 1 6 HELIX 3 A4 LEU A 78 GLY A 91 1 14 HELIX 4 A5 PRO A 99 LYS A 108 1 10 HELIX 5 A6 HIS A 109 LEU A 111 5 3 HELIX 6 A7 SER A 133 ALA A 135 5 3 HELIX 7 A8 ASP A 173 SER A 175 5 3 HELIX 8 B1 ASN B 50 GLU B 64 1 15 HELIX 9 B2 GLU B 65 PHE B 67 5 3 HELIX 10 B3 PHE B 68 SER B 73 1 6 HELIX 11 B4 LEU B 78 GLY B 91 1 14 HELIX 12 B5 PRO B 99 LYS B 108 1 10 HELIX 13 B6 HIS B 109 LEU B 111 5 3 HELIX 14 B7 SER B 133 ALA B 135 5 3 HELIX 15 B8 ASP B 173 SER B 175 5 3 HELIX 16 C1 ASN C 50 VAL C 63 1 14 HELIX 17 C3 PHE C 68 SER C 73 1 6 HELIX 18 C4 LEU C 78 GLY C 91 1 14 HELIX 19 C5 PRO C 99 LYS C 108 1 10 HELIX 20 C6 HIS C 109 LEU C 111 5 3 HELIX 21 C7 SER C 133 ALA C 135 5 3 HELIX 22 C8 ASP C 173 SER C 175 5 3 SHEET 1 AA 2 GLU A 30 THR A 32 0 SHEET 2 AA 2 LYS A 38 THR A 40 -1 N LYS A 39 O LEU A 31 SHEET 1 AB 2 ILE A 115 THR A 117 0 SHEET 2 AB 2 VAL A 124 VAL A 126 1 N VAL A 124 O GLY A 116 SHEET 1 AC 5 ASP A 166 PRO A 169 0 SHEET 2 AC 5 TYR A 160 ASP A 163 -1 N ASP A 163 O ASP A 166 SHEET 3 AC 5 HIS A 148 CYS A 153 -1 N CYS A 153 O TYR A 160 SHEET 4 AC 5 PHE A 137 LYS A 144 -1 N LYS A 144 O HIS A 148 SHEET 5 AC 5 VAL A 179 PRO A 182 -1 N VAL A 181 O HIS A 138 SHEET 1 BA 2 GLU B 30 THR B 32 0 SHEET 2 BA 2 LYS B 38 THR B 40 -1 N LYS B 39 O LEU B 31 SHEET 1 BB 2 ILE B 115 THR B 117 0 SHEET 2 BB 2 VAL B 124 VAL B 126 1 N VAL B 124 O GLY B 116 SHEET 1 BC 5 ASP B 166 PRO B 169 0 SHEET 2 BC 5 TYR B 160 ASP B 163 -1 N ASP B 163 O ASP B 166 SHEET 3 BC 5 HIS B 148 CYS B 153 -1 N CYS B 153 O TYR B 160 SHEET 4 BC 5 PHE B 137 LYS B 144 -1 N LYS B 144 O HIS B 148 SHEET 5 BC 5 VAL B 179 PRO B 182 -1 N VAL B 181 O HIS B 138 SHEET 1 CA 2 GLU C 30 THR C 32 0 SHEET 2 CA 2 LYS C 38 THR C 40 -1 N LYS C 39 O LEU C 31 SHEET 1 CB 2 ILE C 115 THR C 117 0 SHEET 2 CB 2 VAL C 124 VAL C 126 1 N VAL C 124 O GLY C 116 SHEET 1 CC 5 ASP C 166 PRO C 169 0 SHEET 2 CC 5 GLY C 158 ASP C 163 -1 N ASP C 163 O ASP C 166 SHEET 3 CC 5 HIS C 148 THR C 155 -1 N THR C 155 O GLY C 158 SHEET 4 CC 5 PHE C 137 LYS C 144 -1 N LYS C 144 O HIS C 148 SHEET 5 CC 5 VAL C 179 PRO C 182 -1 N VAL C 181 O HIS C 138 SITE 1 AC1 6 LEU B 33 ASN B 35 GLU B 37 LYS B 39 SITE 2 AC1 6 TYR B 62 HOH B2138 SITE 1 AC2 4 PRO B 45 ASN B 47 ASN B 77 HOH B2139 CRYST1 46.064 110.751 56.966 90.00 98.75 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021709 0.000000 0.003341 0.00000 SCALE2 0.000000 0.009029 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017761 0.00000