HEADER OXIDOREDUCTASE 20-OCT-99 1QNN TITLE CAMBIALISTIC SUPEROXIDE DISMUTASE FROM PORPHYROMONAS GINGIVALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: FE/MN-SOD; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: EACH CHAIN CONTAINS ONE METAL ION (FE3+\:MN3+=3\:1). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 837; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: QC774; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PKD210; SOURCE 8 EXPRESSION_SYSTEM_GENE: SOD KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SUGIO,B.Y.HIRAOKA,F.YAMAKURA REVDAT 7 13-DEC-23 1QNN 1 REMARK LINK REVDAT 6 08-MAY-19 1QNN 1 REMARK REVDAT 5 10-APR-19 1QNN 1 SOURCE REVDAT 4 06-MAR-19 1QNN 1 REMARK REVDAT 3 05-JUL-17 1QNN 1 REMARK REVDAT 2 24-FEB-09 1QNN 1 VERSN REVDAT 1 21-JUN-00 1QNN 0 JRNL AUTH S.SUGIO,B.Y.HIRAOKA,F.YAMAKURA JRNL TITL CRYSTAL STRUCTURE OF CAMBIALISTIC SUPEROXIDE DISMUTASE FROM JRNL TITL 2 PORPHYROMONAS GINGIVALIS JRNL REF EUR.J.BIOCHEM. V. 267 3487 2000 JRNL REFN ISSN 0014-2956 JRNL PMID 10848964 JRNL DOI 10.1046/J.1432-1327.2000.01373.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.YAMAKURA,R.L.RARDIN,G.A.PETSKO,D.RINGE,B.Y.HIRAOKA, REMARK 1 AUTH 2 K.NAKAYAMA,T.FUJIMURA,H.TAKA,K.MURAYAMA REMARK 1 TITL INACTIVATION AND DESTRUCTION OF CONSERVED TRP159 OF REMARK 1 TITL 2 FE-SUPEROXIDE DISMUTASE FROM PORPHYROMONAS GINGIVALIS BY REMARK 1 TITL 3 HYDROGEN PEROXIDE REMARK 1 REF EUR.J.BIOCHEM. V. 253 49 1998 REMARK 1 REFN ISSN 0014-2956 REMARK 1 PMID 9578460 REMARK 1 DOI 10.1046/J.1432-1327.1998.2530049.X REMARK 1 REFERENCE 2 REMARK 1 AUTH A.AMANO,S.SHIZUKUISHI,A.TSUNEMITSU,K.MAEKAWA,S.TSUNEMITSU REMARK 1 TITL THE PRIMARY STRUCTURE OF SUPEROXIDE DISMUTASE PURIFIED FROM REMARK 1 TITL 2 ANAEROBICALLY MAINTAINED BACTEROIDES GINGIVALIS REMARK 1 REF FEBS LETT. V. 272 217 1990 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 2226833 REMARK 1 DOI 10.1016/0014-5793(90)80488-5 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.AMANO,S.SHIZUKUISHI,H.TAMAGAWA,K.IWAKURA,S.TSUNASAWA, REMARK 1 AUTH 2 S.TSUNEMITSU REMARK 1 TITL CHARACTERIZATION OF SUPEROXIDE DISMUTASE PURIFIED FROM REMARK 1 TITL 2 EITHER ANAEROBICALLY MAINTAINED OR AERATED BACTEROIDES REMARK 1 TITL 3 GINGIVALIS REMARK 1 REF J.BACTERIOL. V. 172 1457 1990 REMARK 1 REFN ISSN 0021-9193 REMARK 1 PMID 2307656 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.7 REMARK 3 NUMBER OF REFLECTIONS : 63443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1927 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5976 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 207 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6096 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 436 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.220 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.670 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.999 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.572 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.573 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.337 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : EXTRA.PAR REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : EXTRA.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: A RESOLUTION-DEPENDENT WEIGHTS AND BULK REMARK 3 SOLVENT CORRECTION WERE APPLIED REMARK 4 REMARK 4 1QNN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-OCT-99. REMARK 100 THE DEPOSITION ID IS D_1290004187. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-96 REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : 5.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROCESS REMARK 200 DATA SCALING SOFTWARE : PROCESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64134 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 99.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 200 DATA REDUNDANCY : 5.640 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.851 REMARK 200 STARTING MODEL: PDB ENTRY 1ISA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SOLUTION CONTAINING 6-9MG/ML PROTEIN REMARK 280 AND 10MM TRIS/HCL (PH7.8) WERE USED FOR CRYSTALLIZATION. REMARK 280 CRYSTALS WERE GROWN FROM HANGING DROPS SUSPENDED OVER A REMARK 280 RESERVOIR SOLUTION CONTAINING 100MM POTASSIUM PHOSPHATE (PH5.8) REMARK 280 AND 26-31% PEG4000 AT 293K WITHIN A FEW WEEKS., PH 5.80, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.73500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.79500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.79500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.73500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 85 -112.43 -126.35 REMARK 500 ASN A 141 -109.09 54.48 REMARK 500 GLN A 168 -122.78 54.32 REMARK 500 PRO B 9 23.96 -78.52 REMARK 500 LYS B 85 -125.78 -115.90 REMARK 500 LYS B 99 -74.72 -64.22 REMARK 500 ASN B 141 -104.36 51.91 REMARK 500 TYR B 163 -8.06 -140.56 REMARK 500 GLN B 168 -128.10 53.00 REMARK 500 LYS C 85 -119.47 -117.48 REMARK 500 ASN C 141 -114.07 55.30 REMARK 500 TYR C 163 -7.09 -142.92 REMARK 500 GLN C 168 -119.35 55.34 REMARK 500 ILE D 6 153.32 -46.17 REMARK 500 LYS D 30 -56.15 -122.64 REMARK 500 LYS D 85 -115.38 -107.97 REMARK 500 ASN D 141 -106.48 50.63 REMARK 500 TYR D 163 -11.60 -141.41 REMARK 500 GLN D 168 -119.27 50.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 27 NE2 REMARK 620 2 HIS A 74 NE2 84.2 REMARK 620 3 ASP A 157 OD2 94.1 114.0 REMARK 620 4 HIS A 161 NE2 93.2 134.4 111.6 REMARK 620 5 HOH A2085 O 173.8 89.8 86.6 92.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 27 NE2 REMARK 620 2 HIS B 74 NE2 86.5 REMARK 620 3 ASP B 157 OD2 88.0 109.7 REMARK 620 4 HIS B 161 NE2 90.3 133.6 116.5 REMARK 620 5 HOH B2088 O 178.4 91.9 92.6 90.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 27 NE2 REMARK 620 2 HIS C 74 NE2 84.3 REMARK 620 3 ASP C 157 OD2 87.9 112.5 REMARK 620 4 HIS C 161 NE2 93.3 130.1 117.2 REMARK 620 5 HOH C2117 O 176.5 98.1 88.8 87.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 27 NE2 REMARK 620 2 HIS D 74 NE2 88.0 REMARK 620 3 ASP D 157 OD2 84.7 104.6 REMARK 620 4 HIS D 161 NE2 95.7 138.1 117.3 REMARK 620 5 HOH D2056 O 171.6 88.2 89.0 92.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE D 201 DBREF 1QNN A 1 191 UNP P19665 SODF_PORGI 1 191 DBREF 1QNN B 1 191 UNP P19665 SODF_PORGI 1 191 DBREF 1QNN C 1 191 UNP P19665 SODF_PORGI 1 191 DBREF 1QNN D 1 191 UNP P19665 SODF_PORGI 1 191 SEQRES 1 A 191 MET THR HIS GLU LEU ILE SER LEU PRO TYR ALA VAL ASP SEQRES 2 A 191 ALA LEU ALA PRO VAL ILE SER LYS GLU THR VAL GLU PHE SEQRES 3 A 191 HIS HIS GLY LYS HIS LEU LYS THR TYR VAL ASP ASN LEU SEQRES 4 A 191 ASN LYS LEU ILE ILE GLY THR GLU PHE GLU ASN ALA ASP SEQRES 5 A 191 LEU ASN THR ILE VAL GLN LYS SER GLU GLY GLY ILE PHE SEQRES 6 A 191 ASN ASN ALA GLY GLN THR LEU ASN HIS ASN LEU TYR PHE SEQRES 7 A 191 THR GLN PHE ARG PRO GLY LYS GLY GLY ALA PRO LYS GLY SEQRES 8 A 191 LYS LEU GLY GLU ALA ILE ASP LYS GLN PHE GLY SER PHE SEQRES 9 A 191 GLU LYS PHE LYS GLU GLU PHE ASN THR ALA GLY THR THR SEQRES 10 A 191 LEU PHE GLY SER GLY TRP VAL TRP LEU ALA SER ASP ALA SEQRES 11 A 191 ASN GLY LYS LEU SER ILE GLU LYS GLU PRO ASN ALA GLY SEQRES 12 A 191 ASN PRO VAL ARG LYS GLY LEU ASN PRO LEU LEU GLY PHE SEQRES 13 A 191 ASP VAL TRP GLU HIS ALA TYR TYR LEU THR TYR GLN ASN SEQRES 14 A 191 ARG ARG ALA ASP HIS LEU LYS ASP LEU TRP SER ILE VAL SEQRES 15 A 191 ASP TRP ASP ILE VAL GLU SER ARG TYR SEQRES 1 B 191 MET THR HIS GLU LEU ILE SER LEU PRO TYR ALA VAL ASP SEQRES 2 B 191 ALA LEU ALA PRO VAL ILE SER LYS GLU THR VAL GLU PHE SEQRES 3 B 191 HIS HIS GLY LYS HIS LEU LYS THR TYR VAL ASP ASN LEU SEQRES 4 B 191 ASN LYS LEU ILE ILE GLY THR GLU PHE GLU ASN ALA ASP SEQRES 5 B 191 LEU ASN THR ILE VAL GLN LYS SER GLU GLY GLY ILE PHE SEQRES 6 B 191 ASN ASN ALA GLY GLN THR LEU ASN HIS ASN LEU TYR PHE SEQRES 7 B 191 THR GLN PHE ARG PRO GLY LYS GLY GLY ALA PRO LYS GLY SEQRES 8 B 191 LYS LEU GLY GLU ALA ILE ASP LYS GLN PHE GLY SER PHE SEQRES 9 B 191 GLU LYS PHE LYS GLU GLU PHE ASN THR ALA GLY THR THR SEQRES 10 B 191 LEU PHE GLY SER GLY TRP VAL TRP LEU ALA SER ASP ALA SEQRES 11 B 191 ASN GLY LYS LEU SER ILE GLU LYS GLU PRO ASN ALA GLY SEQRES 12 B 191 ASN PRO VAL ARG LYS GLY LEU ASN PRO LEU LEU GLY PHE SEQRES 13 B 191 ASP VAL TRP GLU HIS ALA TYR TYR LEU THR TYR GLN ASN SEQRES 14 B 191 ARG ARG ALA ASP HIS LEU LYS ASP LEU TRP SER ILE VAL SEQRES 15 B 191 ASP TRP ASP ILE VAL GLU SER ARG TYR SEQRES 1 C 191 MET THR HIS GLU LEU ILE SER LEU PRO TYR ALA VAL ASP SEQRES 2 C 191 ALA LEU ALA PRO VAL ILE SER LYS GLU THR VAL GLU PHE SEQRES 3 C 191 HIS HIS GLY LYS HIS LEU LYS THR TYR VAL ASP ASN LEU SEQRES 4 C 191 ASN LYS LEU ILE ILE GLY THR GLU PHE GLU ASN ALA ASP SEQRES 5 C 191 LEU ASN THR ILE VAL GLN LYS SER GLU GLY GLY ILE PHE SEQRES 6 C 191 ASN ASN ALA GLY GLN THR LEU ASN HIS ASN LEU TYR PHE SEQRES 7 C 191 THR GLN PHE ARG PRO GLY LYS GLY GLY ALA PRO LYS GLY SEQRES 8 C 191 LYS LEU GLY GLU ALA ILE ASP LYS GLN PHE GLY SER PHE SEQRES 9 C 191 GLU LYS PHE LYS GLU GLU PHE ASN THR ALA GLY THR THR SEQRES 10 C 191 LEU PHE GLY SER GLY TRP VAL TRP LEU ALA SER ASP ALA SEQRES 11 C 191 ASN GLY LYS LEU SER ILE GLU LYS GLU PRO ASN ALA GLY SEQRES 12 C 191 ASN PRO VAL ARG LYS GLY LEU ASN PRO LEU LEU GLY PHE SEQRES 13 C 191 ASP VAL TRP GLU HIS ALA TYR TYR LEU THR TYR GLN ASN SEQRES 14 C 191 ARG ARG ALA ASP HIS LEU LYS ASP LEU TRP SER ILE VAL SEQRES 15 C 191 ASP TRP ASP ILE VAL GLU SER ARG TYR SEQRES 1 D 191 MET THR HIS GLU LEU ILE SER LEU PRO TYR ALA VAL ASP SEQRES 2 D 191 ALA LEU ALA PRO VAL ILE SER LYS GLU THR VAL GLU PHE SEQRES 3 D 191 HIS HIS GLY LYS HIS LEU LYS THR TYR VAL ASP ASN LEU SEQRES 4 D 191 ASN LYS LEU ILE ILE GLY THR GLU PHE GLU ASN ALA ASP SEQRES 5 D 191 LEU ASN THR ILE VAL GLN LYS SER GLU GLY GLY ILE PHE SEQRES 6 D 191 ASN ASN ALA GLY GLN THR LEU ASN HIS ASN LEU TYR PHE SEQRES 7 D 191 THR GLN PHE ARG PRO GLY LYS GLY GLY ALA PRO LYS GLY SEQRES 8 D 191 LYS LEU GLY GLU ALA ILE ASP LYS GLN PHE GLY SER PHE SEQRES 9 D 191 GLU LYS PHE LYS GLU GLU PHE ASN THR ALA GLY THR THR SEQRES 10 D 191 LEU PHE GLY SER GLY TRP VAL TRP LEU ALA SER ASP ALA SEQRES 11 D 191 ASN GLY LYS LEU SER ILE GLU LYS GLU PRO ASN ALA GLY SEQRES 12 D 191 ASN PRO VAL ARG LYS GLY LEU ASN PRO LEU LEU GLY PHE SEQRES 13 D 191 ASP VAL TRP GLU HIS ALA TYR TYR LEU THR TYR GLN ASN SEQRES 14 D 191 ARG ARG ALA ASP HIS LEU LYS ASP LEU TRP SER ILE VAL SEQRES 15 D 191 ASP TRP ASP ILE VAL GLU SER ARG TYR HET FE A 201 1 HET FE B 201 1 HET FE C 201 1 HET FE D 201 1 HETNAM FE FE (III) ION FORMUL 5 FE 4(FE 3+) FORMUL 9 HOH *436(H2 O) HELIX 1 1 SER A 20 LYS A 30 1 11 HELIX 2 2 LYS A 30 ILE A 43 1 14 HELIX 3 3 ASP A 52 SER A 60 1 9 HELIX 4 4 GLU A 61 GLN A 80 1 20 HELIX 5 5 LYS A 90 GLY A 102 1 13 HELIX 6 6 SER A 103 LEU A 118 1 16 HELIX 7 7 ASN A 144 GLY A 149 5 6 HELIX 8 8 TRP A 159 ALA A 162 5 4 HELIX 9 9 TYR A 163 GLN A 168 1 6 HELIX 10 10 ARG A 170 TRP A 179 1 10 HELIX 11 11 ASP A 183 SER A 189 1 7 HELIX 12 12 SER B 20 HIS B 28 1 9 HELIX 13 13 LYS B 30 ILE B 43 1 14 HELIX 14 14 ASP B 52 SER B 60 1 9 HELIX 15 15 GLU B 61 GLN B 80 1 20 HELIX 16 16 LYS B 90 GLY B 102 1 13 HELIX 17 17 SER B 103 LEU B 118 1 16 HELIX 18 18 ASN B 144 GLY B 149 5 6 HELIX 19 19 TRP B 159 ALA B 162 5 4 HELIX 20 20 TYR B 163 GLN B 168 1 6 HELIX 21 21 ARG B 170 TRP B 179 1 10 HELIX 22 22 ASP B 183 SER B 189 1 7 HELIX 23 23 SER C 20 HIS C 28 1 9 HELIX 24 24 LYS C 30 ILE C 43 1 14 HELIX 25 25 ASP C 52 SER C 60 1 9 HELIX 26 26 GLU C 61 GLN C 80 1 20 HELIX 27 27 LYS C 90 GLY C 102 1 13 HELIX 28 28 SER C 103 LEU C 118 1 16 HELIX 29 29 ASN C 144 GLY C 149 5 6 HELIX 30 30 TRP C 159 ALA C 162 5 4 HELIX 31 31 TYR C 163 GLN C 168 1 6 HELIX 32 32 ARG C 170 TRP C 179 1 10 HELIX 33 33 ASP C 183 TYR C 191 1 9 HELIX 34 34 SER D 20 LYS D 30 1 11 HELIX 35 35 LYS D 30 ILE D 44 1 15 HELIX 36 36 ASP D 52 SER D 60 1 9 HELIX 37 37 GLU D 61 THR D 79 1 19 HELIX 38 38 LYS D 90 GLY D 102 1 13 HELIX 39 39 SER D 103 LEU D 118 1 16 HELIX 40 40 ASN D 144 GLY D 149 5 6 HELIX 41 41 TRP D 159 ALA D 162 5 4 HELIX 42 42 TYR D 163 GLN D 168 1 6 HELIX 43 43 ARG D 170 TRP D 179 1 10 HELIX 44 44 ASP D 183 SER D 189 1 7 SHEET 1 A 3 LEU A 134 PRO A 140 0 SHEET 2 A 3 GLY A 122 SER A 128 -1 N ALA A 127 O SER A 135 SHEET 3 A 3 ASN A 151 ASP A 157 -1 N PHE A 156 O VAL A 124 SHEET 1 B 3 LEU B 134 PRO B 140 0 SHEET 2 B 3 GLY B 122 SER B 128 -1 N ALA B 127 O SER B 135 SHEET 3 B 3 ASN B 151 ASP B 157 -1 N PHE B 156 O VAL B 124 SHEET 1 C 3 LEU C 134 PRO C 140 0 SHEET 2 C 3 GLY C 122 SER C 128 -1 N ALA C 127 O SER C 135 SHEET 3 C 3 ASN C 151 ASP C 157 -1 N PHE C 156 O VAL C 124 SHEET 1 D 3 LEU D 134 PRO D 140 0 SHEET 2 D 3 GLY D 122 SER D 128 -1 N ALA D 127 O SER D 135 SHEET 3 D 3 ASN D 151 ASP D 157 -1 N PHE D 156 O VAL D 124 LINK NE2 HIS A 27 FE FE A 201 1555 1555 2.14 LINK NE2 HIS A 74 FE FE A 201 1555 1555 2.13 LINK OD2 ASP A 157 FE FE A 201 1555 1555 1.88 LINK NE2 HIS A 161 FE FE A 201 1555 1555 2.12 LINK FE FE A 201 O HOH A2085 1555 1555 2.11 LINK NE2 HIS B 27 FE FE B 201 1555 1555 2.24 LINK NE2 HIS B 74 FE FE B 201 1555 1555 2.15 LINK OD2 ASP B 157 FE FE B 201 1555 1555 1.84 LINK NE2 HIS B 161 FE FE B 201 1555 1555 2.13 LINK FE FE B 201 O HOH B2088 1555 1555 2.07 LINK NE2 HIS C 27 FE FE C 201 1555 1555 2.24 LINK NE2 HIS C 74 FE FE C 201 1555 1555 2.11 LINK OD2 ASP C 157 FE FE C 201 1555 1555 1.79 LINK NE2 HIS C 161 FE FE C 201 1555 1555 2.20 LINK FE FE C 201 O HOH C2117 1555 1555 2.05 LINK NE2 HIS D 27 FE FE D 201 1555 1555 2.24 LINK NE2 HIS D 74 FE FE D 201 1555 1555 2.20 LINK OD2 ASP D 157 FE FE D 201 1555 1555 1.90 LINK NE2 HIS D 161 FE FE D 201 1555 1555 2.16 LINK FE FE D 201 O HOH D2056 1555 1555 2.18 CISPEP 1 ALA A 16 PRO A 17 0 0.14 CISPEP 2 ALA B 16 PRO B 17 0 0.68 CISPEP 3 ALA C 16 PRO C 17 0 0.49 CISPEP 4 ALA D 16 PRO D 17 0 0.31 SITE 1 AC1 5 HIS A 27 HIS A 74 ASP A 157 HIS A 161 SITE 2 AC1 5 HOH A2085 SITE 1 AC2 5 HIS B 27 HIS B 74 ASP B 157 HIS B 161 SITE 2 AC2 5 HOH B2088 SITE 1 AC3 5 HIS C 27 HIS C 74 ASP C 157 HIS C 161 SITE 2 AC3 5 HOH C2117 SITE 1 AC4 5 HIS D 27 HIS D 74 ASP D 157 HIS D 161 SITE 2 AC4 5 HOH D2056 CRYST1 75.470 102.660 99.590 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013250 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010041 0.00000 MTRIX1 1 0.256110 -0.146860 -0.955430 89.17615 1 MTRIX2 1 -0.148060 -0.982690 0.111360 112.99615 1 MTRIX3 1 -0.955240 0.112940 -0.273420 100.25890 1 MTRIX1 2 -0.102620 -0.140210 0.984790 2.85580 1 MTRIX2 2 -0.137380 -0.978530 -0.153630 103.85100 1 MTRIX3 2 0.985190 -0.151060 0.081150 18.22559 1 MTRIX1 3 -0.943880 0.270760 0.189160 57.08716 1 MTRIX2 3 0.269120 0.962480 -0.034820 14.43610 1 MTRIX3 3 -0.191490 0.018040 -0.981330 106.03601 1