HEADER VIRAL PROTEIN 14-JUN-99 1QRJ TITLE SOLUTION STRUCTURE OF HTLV-I CAPSID PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTLV-I CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN T-CELL LYMPHOTROPHIC VIRUS TYPE 1; SOURCE 3 ORGANISM_TAXID: 11926; SOURCE 4 STRAIN: ATK; SOURCE 5 GENE: GAG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HMS174(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET16B; SOURCE 11 OTHER_DETAILS: T7-RNA POLYMERASE-BASED EXPRESSION SYSTEM KEYWDS HTLV-I, CAPSID PROTEIN, RETROVIRUS, TWO-DOMAIN PROTEIN, ALPHA HELICAL KEYWDS 2 PROTEIN, HETERONUCLEAR NMR SPECTROSCOPY, VIRUS/VIRAL PROTEIN, VIRAL KEYWDS 3 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.KHORASANIZADEH,R.CAMPOS-OLIVAS,C.A.CLARK,M.F.SUMMERS REVDAT 5 16-OCT-13 1QRJ 1 ATOM REMARK SEQRES VERSN REVDAT 4 24-FEB-09 1QRJ 1 VERSN REVDAT 3 26-SEP-01 1QRJ 1 HELIX REVDAT 2 13-JUL-99 1QRJ 1 JRNL REVDAT 1 13-JUL-99 1QRJ 0 JRNL AUTH S.KHORASANIZADEH,R.CAMPOS-OLIVAS,C.A.CLARK,M.F.SUMMERS JRNL TITL SEQUENCE-SPECIFIC 1H, 13C AND 15N CHEMICAL SHIFT ASSIGNMENT JRNL TITL 2 AND SECONDARY STRUCTURE OF THE HTLV-I CAPSID PROTEIN. JRNL REF J.BIOMOL.NMR V. 14 199 1999 JRNL REFN ISSN 0925-2738 JRNL PMID 10427751 JRNL DOI 10.1023/A:1008307507462 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.4 REMARK 3 AUTHORS : GUNTERT, P. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QRJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-99. REMARK 100 THE RCSB ID CODE IS RCSB009182. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.00 REMARK 210 PH : 6.00 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM HTLV-I CAPSID U- 15N, U- REMARK 210 13C/15N, U-13C/ 15N/2H; 50 MM REMARK 210 PHOSPHATE BUFFER PH 6.0, 300 MM REMARK 210 NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : SEE THE PUBLICATION FOR THE REMARK 210 SPECIFIC EXPERIMENTS REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.1, NMRPIPE 1.7, REMARK 210 NMRVIEW 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS AND REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH LOWEST DYANA REMARK 210 TARGET FUNCTION: RANGE 0.37-0.74 REMARK 210 ANGSTROM SQUARED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 155 H GLY A 158 1.47 REMARK 500 O PRO A 143 H PHE A 147 1.50 REMARK 500 O LYS A 165 H LEU A 169 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 2 82.40 47.59 REMARK 500 1 HIS A 3 141.41 62.98 REMARK 500 1 HIS A 5 150.75 69.76 REMARK 500 1 HIS A 9 100.28 -177.18 REMARK 500 1 HIS A 14 50.66 -174.80 REMARK 500 1 MET A 15 100.38 52.23 REMARK 500 1 GLN A 25 -72.74 -69.55 REMARK 500 1 ALA A 30 166.45 -46.38 REMARK 500 1 PRO A 35 49.92 -75.09 REMARK 500 1 GLN A 47 -72.45 -80.59 REMARK 500 1 ASP A 49 93.92 72.79 REMARK 500 1 THR A 51 -170.90 -58.84 REMARK 500 1 CYS A 63 171.06 -59.22 REMARK 500 1 SER A 65 -70.75 -58.17 REMARK 500 1 ILE A 87 154.70 59.48 REMARK 500 1 THR A 88 -80.56 -36.30 REMARK 500 1 LEU A 97 -62.84 -120.65 REMARK 500 1 PRO A 104 48.08 -74.97 REMARK 500 1 GLN A 105 -45.43 -144.33 REMARK 500 1 ALA A 128 -164.22 -162.65 REMARK 500 1 ALA A 154 -30.85 -39.64 REMARK 500 1 TYR A 174 -73.27 -107.45 REMARK 500 1 SER A 175 -31.55 -39.90 REMARK 500 1 ASN A 176 60.31 -117.26 REMARK 500 1 ASN A 178 172.55 -46.96 REMARK 500 1 LYS A 179 -71.88 -61.13 REMARK 500 1 HIS A 190 29.45 -154.86 REMARK 500 1 GLN A 203 -32.35 -38.15 REMARK 500 1 LYS A 210 146.10 -178.94 REMARK 500 1 LYS A 212 148.86 61.94 REMARK 500 2 HIS A 3 -61.55 71.70 REMARK 500 2 HIS A 4 164.66 -47.36 REMARK 500 2 HIS A 5 -60.75 -138.32 REMARK 500 2 SER A 6 161.92 63.44 REMARK 500 2 ARG A 13 85.13 -156.96 REMARK 500 2 HIS A 14 47.22 39.46 REMARK 500 2 MET A 15 85.34 178.46 REMARK 500 2 GLN A 25 -72.44 -72.83 REMARK 500 2 ALA A 30 170.89 -52.61 REMARK 500 2 GLN A 47 -76.13 -79.41 REMARK 500 2 ASP A 49 95.14 71.50 REMARK 500 2 LEU A 62 -61.96 -91.98 REMARK 500 2 THR A 88 -84.83 -38.76 REMARK 500 2 ALA A 128 111.18 79.00 REMARK 500 2 ASP A 130 115.24 165.68 REMARK 500 2 TYR A 174 -78.39 -110.47 REMARK 500 2 SER A 175 -32.50 -37.05 REMARK 500 2 ASN A 176 57.74 -110.74 REMARK 500 2 ASN A 178 -175.58 -52.28 REMARK 500 2 THR A 191 -54.86 -121.09 REMARK 500 REMARK 500 THIS ENTRY HAS 468 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1QRJ A 1 214 UNP P03345 GAG_HTL1A 146 344 SEQADV 1QRJ HIS A 1 UNP P03345 EXPRESSION TAG SEQADV 1QRJ HIS A 2 UNP P03345 EXPRESSION TAG SEQADV 1QRJ HIS A 3 UNP P03345 EXPRESSION TAG SEQADV 1QRJ HIS A 4 UNP P03345 EXPRESSION TAG SEQADV 1QRJ HIS A 5 UNP P03345 EXPRESSION TAG SEQADV 1QRJ SER A 6 UNP P03345 EXPRESSION TAG SEQADV 1QRJ SER A 7 UNP P03345 EXPRESSION TAG SEQADV 1QRJ GLY A 8 UNP P03345 EXPRESSION TAG SEQADV 1QRJ HIS A 9 UNP P03345 EXPRESSION TAG SEQADV 1QRJ ILE A 10 UNP P03345 EXPRESSION TAG SEQADV 1QRJ GLU A 11 UNP P03345 EXPRESSION TAG SEQADV 1QRJ GLY A 12 UNP P03345 EXPRESSION TAG SEQADV 1QRJ ARG A 13 UNP P03345 EXPRESSION TAG SEQADV 1QRJ HIS A 14 UNP P03345 EXPRESSION TAG SEQADV 1QRJ MET A 15 UNP P03345 EXPRESSION TAG SEQRES 1 A 214 HIS HIS HIS HIS HIS SER SER GLY HIS ILE GLU GLY ARG SEQRES 2 A 214 HIS MET GLN MET LYS ASP LEU GLN ALA ILE LYS GLN GLU SEQRES 3 A 214 VAL SER GLN ALA ALA PRO GLY SER PRO GLN PHE MET GLN SEQRES 4 A 214 THR ILE ARG LEU ALA VAL GLN GLN PHE ASP PRO THR ALA SEQRES 5 A 214 LYS ASP LEU GLN ASP LEU LEU GLN TYR LEU CYS SER SER SEQRES 6 A 214 LEU VAL ALA SER LEU HIS HIS GLN GLN LEU ASP SER LEU SEQRES 7 A 214 ILE SER GLU ALA GLU THR ARG GLY ILE THR GLY TYR ASN SEQRES 8 A 214 PRO LEU ALA GLY PRO LEU ARG VAL GLN ALA ASN ASN PRO SEQRES 9 A 214 GLN GLN GLN GLY LEU ARG ARG GLU TYR GLN GLN LEU TRP SEQRES 10 A 214 LEU ALA ALA PHE ALA ALA LEU PRO GLY SER ALA LYS ASP SEQRES 11 A 214 PRO SER TRP ALA SER ILE LEU GLN GLY LEU GLU GLU PRO SEQRES 12 A 214 TYR HIS ALA PHE VAL GLU ARG LEU ASN ILE ALA LEU ASP SEQRES 13 A 214 ASN GLY LEU PRO GLU GLY THR PRO LYS ASP PRO ILE LEU SEQRES 14 A 214 ARG SER LEU ALA TYR SER ASN ALA ASN LYS GLU CYS GLN SEQRES 15 A 214 LYS LEU LEU GLN ALA ARG GLY HIS THR ASN SER PRO LEU SEQRES 16 A 214 GLY ASP MET LEU ARG ALA CYS GLN THR TRP THR PRO LYS SEQRES 17 A 214 ASP LYS THR LYS VAL LEU HELIX 1 1 GLN A 16 ALA A 30 1 15 HELIX 2 2 GLN A 36 PHE A 48 1 13 HELIX 3 3 THR A 51 GLN A 60 1 10 HELIX 4 4 SER A 64 ARG A 85 1 22 HELIX 5 5 LEU A 97 ASN A 102 1 6 HELIX 6 6 GLN A 107 ALA A 122 1 16 HELIX 7 7 SER A 132 ILE A 136 5 5 HELIX 8 8 PRO A 143 ASN A 157 1 15 HELIX 9 9 LYS A 165 TYR A 174 1 10 HELIX 10 10 ASN A 178 GLY A 189 1 12 HELIX 11 11 PRO A 194 GLN A 203 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1