data_1QUB
#
_entry.id 1QUB
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.398
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1QUB pdb_00001qub 10.2210/pdb1qub/pdb
RCSB RCSB009274 ? ?
WWPDB D_1000009274 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1999-10-08
2 'Structure model' 1 1 2008-04-27
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2018-01-24
5 'Structure model' 2 0 2020-07-29
6 'Structure model' 2 1 2024-10-30
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Non-polymer description'
3 3 'Structure model' 'Version format compliance'
4 4 'Structure model' 'Structure summary'
5 5 'Structure model' Advisory
6 5 'Structure model' 'Atomic model'
7 5 'Structure model' 'Data collection'
8 5 'Structure model' 'Derived calculations'
9 5 'Structure model' 'Structure summary'
10 6 'Structure model' 'Data collection'
11 6 'Structure model' 'Database references'
12 6 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' audit_author
2 5 'Structure model' atom_site
3 5 'Structure model' chem_comp
4 5 'Structure model' database_PDB_caveat
5 5 'Structure model' entity
6 5 'Structure model' pdbx_branch_scheme
7 5 'Structure model' pdbx_chem_comp_identifier
8 5 'Structure model' pdbx_entity_branch
9 5 'Structure model' pdbx_entity_branch_descriptor
10 5 'Structure model' pdbx_entity_branch_link
11 5 'Structure model' pdbx_entity_branch_list
12 5 'Structure model' pdbx_entity_nonpoly
13 5 'Structure model' pdbx_nonpoly_scheme
14 5 'Structure model' pdbx_struct_assembly_gen
15 5 'Structure model' pdbx_validate_chiral
16 5 'Structure model' struct_asym
17 5 'Structure model' struct_conn
18 5 'Structure model' struct_site
19 5 'Structure model' struct_site_gen
20 6 'Structure model' chem_comp
21 6 'Structure model' chem_comp_atom
22 6 'Structure model' chem_comp_bond
23 6 'Structure model' database_2
24 6 'Structure model' pdbx_entry_details
25 6 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_audit_author.name'
2 5 'Structure model' '_atom_site.B_iso_or_equiv'
3 5 'Structure model' '_atom_site.Cartn_x'
4 5 'Structure model' '_atom_site.Cartn_y'
5 5 'Structure model' '_atom_site.Cartn_z'
6 5 'Structure model' '_atom_site.auth_asym_id'
7 5 'Structure model' '_atom_site.auth_atom_id'
8 5 'Structure model' '_atom_site.auth_comp_id'
9 5 'Structure model' '_atom_site.auth_seq_id'
10 5 'Structure model' '_atom_site.label_asym_id'
11 5 'Structure model' '_atom_site.label_atom_id'
12 5 'Structure model' '_atom_site.label_comp_id'
13 5 'Structure model' '_atom_site.label_entity_id'
14 5 'Structure model' '_atom_site.type_symbol'
15 5 'Structure model' '_chem_comp.name'
16 5 'Structure model' '_chem_comp.type'
17 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
18 5 'Structure model' '_pdbx_validate_chiral.auth_asym_id'
19 5 'Structure model' '_pdbx_validate_chiral.auth_seq_id'
20 5 'Structure model' '_struct_conn.pdbx_dist_value'
21 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
22 5 'Structure model' '_struct_conn.pdbx_role'
23 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
24 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
25 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
26 5 'Structure model' '_struct_conn.ptnr1_label_asym_id'
27 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'
28 5 'Structure model' '_struct_conn.ptnr1_label_comp_id'
29 5 'Structure model' '_struct_conn.ptnr1_label_seq_id'
30 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
31 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
32 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
33 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'
34 5 'Structure model' '_struct_conn.ptnr2_label_comp_id'
35 6 'Structure model' '_chem_comp.pdbx_synonyms'
36 6 'Structure model' '_database_2.pdbx_DOI'
37 6 'Structure model' '_database_2.pdbx_database_accession'
#
loop_
_database_PDB_caveat.id
_database_PDB_caveat.text
1 'MAN B 3 HAS WRONG CHIRALITY AT ATOM C1'
2 'NAG C 2 HAS WRONG CHIRALITY AT ATOM C1'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1QUB
_pdbx_database_status.recvd_initial_deposition_date 1999-07-01
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bouma, B.' 1
'de Groot, P.G.' 2
'van den Elsen, J.M.H.' 3
'Ravelli, R.B.G.' 4
'Schouten, A.' 5
'Simmelink, M.J.A.' 6
'Derksen, R.H.W.M.' 7
'Kroon, J.' 8
'Gros, P.' 9
#
_citation.id primary
_citation.title
'Adhesion mechanism of human beta(2)-glycoprotein I to phospholipids based on its crystal structure.'
_citation.journal_abbrev 'EMBO J.'
_citation.journal_volume 18
_citation.page_first 5166
_citation.page_last 5174
_citation.year 1999
_citation.journal_id_ASTM EMJODG
_citation.country UK
_citation.journal_id_ISSN 0261-4189
_citation.journal_id_CSD 0897
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 10508150
_citation.pdbx_database_id_DOI 10.1093/emboj/18.19.5166
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Bouma, B.' 1 ?
primary 'de Groot, P.G.' 2 ?
primary 'van den Elsen, J.M.' 3 ?
primary 'Ravelli, R.B.' 4 ?
primary 'Schouten, A.' 5 ?
primary 'Simmelink, M.J.' 6 ?
primary 'Derksen, R.H.' 7 ?
primary 'Kroon, J.' 8 ?
primary 'Gros, P.' 9 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer nat 'PROTEIN (human beta2-Glycoprotein I)' 35478.641 1 ? ? 'BETA2-GLYCOPROTEIN I' ?
2 branched man
'alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1
? ? ? ?
3 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ?
4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ?
5 water nat water 18.015 32 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;GRTCPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKCTPRVCPFAGILENGAVRYTT
FEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPELPVCAPIICPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQHA
MFGNDTITCTTHGNWTKLPECREVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNWSAMPS
CKASCKVPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFCKNKEKKCSYTEDAQCIDGTIEVPKCFKEHTDASDVKPC
;
_entity_poly.pdbx_seq_one_letter_code_can
;GRTCPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKCTPRVCPFAGILENGAVRYTT
FEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPELPVCAPIICPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQHA
MFGNDTITCTTHGNWTKLPECREVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNWSAMPS
CKASCKVPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFCKNKEKKCSYTEDAQCIDGTIEVPKCFKEHTDASDVKPC
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG
5 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 ARG n
1 3 THR n
1 4 CYS n
1 5 PRO n
1 6 LYS n
1 7 PRO n
1 8 ASP n
1 9 ASP n
1 10 LEU n
1 11 PRO n
1 12 PHE n
1 13 SER n
1 14 THR n
1 15 VAL n
1 16 VAL n
1 17 PRO n
1 18 LEU n
1 19 LYS n
1 20 THR n
1 21 PHE n
1 22 TYR n
1 23 GLU n
1 24 PRO n
1 25 GLY n
1 26 GLU n
1 27 GLU n
1 28 ILE n
1 29 THR n
1 30 TYR n
1 31 SER n
1 32 CYS n
1 33 LYS n
1 34 PRO n
1 35 GLY n
1 36 TYR n
1 37 VAL n
1 38 SER n
1 39 ARG n
1 40 GLY n
1 41 GLY n
1 42 MET n
1 43 ARG n
1 44 LYS n
1 45 PHE n
1 46 ILE n
1 47 CYS n
1 48 PRO n
1 49 LEU n
1 50 THR n
1 51 GLY n
1 52 LEU n
1 53 TRP n
1 54 PRO n
1 55 ILE n
1 56 ASN n
1 57 THR n
1 58 LEU n
1 59 LYS n
1 60 CYS n
1 61 THR n
1 62 PRO n
1 63 ARG n
1 64 VAL n
1 65 CYS n
1 66 PRO n
1 67 PHE n
1 68 ALA n
1 69 GLY n
1 70 ILE n
1 71 LEU n
1 72 GLU n
1 73 ASN n
1 74 GLY n
1 75 ALA n
1 76 VAL n
1 77 ARG n
1 78 TYR n
1 79 THR n
1 80 THR n
1 81 PHE n
1 82 GLU n
1 83 TYR n
1 84 PRO n
1 85 ASN n
1 86 THR n
1 87 ILE n
1 88 SER n
1 89 PHE n
1 90 SER n
1 91 CYS n
1 92 ASN n
1 93 THR n
1 94 GLY n
1 95 PHE n
1 96 TYR n
1 97 LEU n
1 98 ASN n
1 99 GLY n
1 100 ALA n
1 101 ASP n
1 102 SER n
1 103 ALA n
1 104 LYS n
1 105 CYS n
1 106 THR n
1 107 GLU n
1 108 GLU n
1 109 GLY n
1 110 LYS n
1 111 TRP n
1 112 SER n
1 113 PRO n
1 114 GLU n
1 115 LEU n
1 116 PRO n
1 117 VAL n
1 118 CYS n
1 119 ALA n
1 120 PRO n
1 121 ILE n
1 122 ILE n
1 123 CYS n
1 124 PRO n
1 125 PRO n
1 126 PRO n
1 127 SER n
1 128 ILE n
1 129 PRO n
1 130 THR n
1 131 PHE n
1 132 ALA n
1 133 THR n
1 134 LEU n
1 135 ARG n
1 136 VAL n
1 137 TYR n
1 138 LYS n
1 139 PRO n
1 140 SER n
1 141 ALA n
1 142 GLY n
1 143 ASN n
1 144 ASN n
1 145 SER n
1 146 LEU n
1 147 TYR n
1 148 ARG n
1 149 ASP n
1 150 THR n
1 151 ALA n
1 152 VAL n
1 153 PHE n
1 154 GLU n
1 155 CYS n
1 156 LEU n
1 157 PRO n
1 158 GLN n
1 159 HIS n
1 160 ALA n
1 161 MET n
1 162 PHE n
1 163 GLY n
1 164 ASN n
1 165 ASP n
1 166 THR n
1 167 ILE n
1 168 THR n
1 169 CYS n
1 170 THR n
1 171 THR n
1 172 HIS n
1 173 GLY n
1 174 ASN n
1 175 TRP n
1 176 THR n
1 177 LYS n
1 178 LEU n
1 179 PRO n
1 180 GLU n
1 181 CYS n
1 182 ARG n
1 183 GLU n
1 184 VAL n
1 185 LYS n
1 186 CYS n
1 187 PRO n
1 188 PHE n
1 189 PRO n
1 190 SER n
1 191 ARG n
1 192 PRO n
1 193 ASP n
1 194 ASN n
1 195 GLY n
1 196 PHE n
1 197 VAL n
1 198 ASN n
1 199 TYR n
1 200 PRO n
1 201 ALA n
1 202 LYS n
1 203 PRO n
1 204 THR n
1 205 LEU n
1 206 TYR n
1 207 TYR n
1 208 LYS n
1 209 ASP n
1 210 LYS n
1 211 ALA n
1 212 THR n
1 213 PHE n
1 214 GLY n
1 215 CYS n
1 216 HIS n
1 217 ASP n
1 218 GLY n
1 219 TYR n
1 220 SER n
1 221 LEU n
1 222 ASP n
1 223 GLY n
1 224 PRO n
1 225 GLU n
1 226 GLU n
1 227 ILE n
1 228 GLU n
1 229 CYS n
1 230 THR n
1 231 LYS n
1 232 LEU n
1 233 GLY n
1 234 ASN n
1 235 TRP n
1 236 SER n
1 237 ALA n
1 238 MET n
1 239 PRO n
1 240 SER n
1 241 CYS n
1 242 LYS n
1 243 ALA n
1 244 SER n
1 245 CYS n
1 246 LYS n
1 247 VAL n
1 248 PRO n
1 249 VAL n
1 250 LYS n
1 251 LYS n
1 252 ALA n
1 253 THR n
1 254 VAL n
1 255 VAL n
1 256 TYR n
1 257 GLN n
1 258 GLY n
1 259 GLU n
1 260 ARG n
1 261 VAL n
1 262 LYS n
1 263 ILE n
1 264 GLN n
1 265 GLU n
1 266 LYS n
1 267 PHE n
1 268 LYS n
1 269 ASN n
1 270 GLY n
1 271 MET n
1 272 LEU n
1 273 HIS n
1 274 GLY n
1 275 ASP n
1 276 LYS n
1 277 VAL n
1 278 SER n
1 279 PHE n
1 280 PHE n
1 281 CYS n
1 282 LYS n
1 283 ASN n
1 284 LYS n
1 285 GLU n
1 286 LYS n
1 287 LYS n
1 288 CYS n
1 289 SER n
1 290 TYR n
1 291 THR n
1 292 GLU n
1 293 ASP n
1 294 ALA n
1 295 GLN n
1 296 CYS n
1 297 ILE n
1 298 ASP n
1 299 GLY n
1 300 THR n
1 301 ILE n
1 302 GLU n
1 303 VAL n
1 304 PRO n
1 305 LYS n
1 306 CYS n
1 307 PHE n
1 308 LYS n
1 309 GLU n
1 310 HIS n
1 311 THR n
1 312 ASP n
1 313 ALA n
1 314 SER n
1 315 ASP n
1 316 VAL n
1 317 LYS n
1 318 PRO n
1 319 CYS n
#
_entity_src_nat.entity_id 1
_entity_src_nat.pdbx_src_id 1
_entity_src_nat.pdbx_alt_source_flag sample
_entity_src_nat.pdbx_beg_seq_num ?
_entity_src_nat.pdbx_end_seq_num ?
_entity_src_nat.common_name human
_entity_src_nat.pdbx_organism_scientific 'Homo sapiens'
_entity_src_nat.pdbx_ncbi_taxonomy_id 9606
_entity_src_nat.genus Homo
_entity_src_nat.species ?
_entity_src_nat.strain ?
_entity_src_nat.tissue ?
_entity_src_nat.tissue_fraction ?
_entity_src_nat.pdbx_secretion ?
_entity_src_nat.pdbx_fragment ?
_entity_src_nat.pdbx_variant ?
_entity_src_nat.pdbx_cell_line ?
_entity_src_nat.pdbx_atcc ?
_entity_src_nat.pdbx_cellular_location ?
_entity_src_nat.pdbx_organ ?
_entity_src_nat.pdbx_organelle 'BLOOD PLASMA'
_entity_src_nat.pdbx_cell ?
_entity_src_nat.pdbx_plasmid_name ?
_entity_src_nat.pdbx_plasmid_details ?
_entity_src_nat.details ?
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide
3 oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 DManpa1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0
2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0
3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ?
4 3 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0
5 3 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0
6 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][a-D-GlcpNAc]{}}}' LINUCS PDB-CARE ?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ?
2 2 3 MAN C1 O1 2 NAG O4 HO4 sing ?
3 3 2 NAG C1 O1 1 NAG O4 HO4 sing ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6'
180.156
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa
MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose
MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp
MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 1 1 GLY GLY A . n
A 1 2 ARG 2 2 2 ARG ARG A . n
A 1 3 THR 3 3 3 THR THR A . n
A 1 4 CYS 4 4 4 CYS CYS A . n
A 1 5 PRO 5 5 5 PRO PRO A . n
A 1 6 LYS 6 6 6 LYS LYS A . n
A 1 7 PRO 7 7 7 PRO PRO A . n
A 1 8 ASP 8 8 8 ASP ASP A . n
A 1 9 ASP 9 9 9 ASP ASP A . n
A 1 10 LEU 10 10 10 LEU LEU A . n
A 1 11 PRO 11 11 11 PRO PRO A . n
A 1 12 PHE 12 12 12 PHE PHE A . n
A 1 13 SER 13 13 13 SER SER A . n
A 1 14 THR 14 14 14 THR THR A . n
A 1 15 VAL 15 15 15 VAL VAL A . n
A 1 16 VAL 16 16 16 VAL VAL A . n
A 1 17 PRO 17 17 17 PRO PRO A . n
A 1 18 LEU 18 18 18 LEU LEU A . n
A 1 19 LYS 19 19 19 LYS LYS A . n
A 1 20 THR 20 20 20 THR THR A . n
A 1 21 PHE 21 21 21 PHE PHE A . n
A 1 22 TYR 22 22 22 TYR TYR A . n
A 1 23 GLU 23 23 23 GLU GLU A . n
A 1 24 PRO 24 24 24 PRO PRO A . n
A 1 25 GLY 25 25 25 GLY GLY A . n
A 1 26 GLU 26 26 26 GLU GLU A . n
A 1 27 GLU 27 27 27 GLU GLU A . n
A 1 28 ILE 28 28 28 ILE ILE A . n
A 1 29 THR 29 29 29 THR THR A . n
A 1 30 TYR 30 30 30 TYR TYR A . n
A 1 31 SER 31 31 31 SER SER A . n
A 1 32 CYS 32 32 32 CYS CYS A . n
A 1 33 LYS 33 33 33 LYS LYS A . n
A 1 34 PRO 34 34 34 PRO PRO A . n
A 1 35 GLY 35 35 35 GLY GLY A . n
A 1 36 TYR 36 36 36 TYR TYR A . n
A 1 37 VAL 37 37 37 VAL VAL A . n
A 1 38 SER 38 38 38 SER SER A . n
A 1 39 ARG 39 39 39 ARG ARG A . n
A 1 40 GLY 40 40 40 GLY GLY A . n
A 1 41 GLY 41 41 41 GLY GLY A . n
A 1 42 MET 42 42 42 MET MET A . n
A 1 43 ARG 43 43 43 ARG ARG A . n
A 1 44 LYS 44 44 44 LYS LYS A . n
A 1 45 PHE 45 45 45 PHE PHE A . n
A 1 46 ILE 46 46 46 ILE ILE A . n
A 1 47 CYS 47 47 47 CYS CYS A . n
A 1 48 PRO 48 48 48 PRO PRO A . n
A 1 49 LEU 49 49 49 LEU LEU A . n
A 1 50 THR 50 50 50 THR THR A . n
A 1 51 GLY 51 51 51 GLY GLY A . n
A 1 52 LEU 52 52 52 LEU LEU A . n
A 1 53 TRP 53 53 53 TRP TRP A . n
A 1 54 PRO 54 54 54 PRO PRO A . n
A 1 55 ILE 55 55 55 ILE ILE A . n
A 1 56 ASN 56 56 56 ASN ASN A . n
A 1 57 THR 57 57 57 THR THR A . n
A 1 58 LEU 58 58 58 LEU LEU A . n
A 1 59 LYS 59 59 59 LYS LYS A . n
A 1 60 CYS 60 60 60 CYS CYS A . n
A 1 61 THR 61 61 61 THR THR A . n
A 1 62 PRO 62 62 62 PRO PRO A . n
A 1 63 ARG 63 63 63 ARG ARG A . n
A 1 64 VAL 64 64 64 VAL VAL A . n
A 1 65 CYS 65 65 65 CYS CYS A . n
A 1 66 PRO 66 66 66 PRO PRO A . n
A 1 67 PHE 67 67 67 PHE PHE A . n
A 1 68 ALA 68 68 68 ALA ALA A . n
A 1 69 GLY 69 69 69 GLY GLY A . n
A 1 70 ILE 70 70 70 ILE ILE A . n
A 1 71 LEU 71 71 71 LEU LEU A . n
A 1 72 GLU 72 72 72 GLU GLU A . n
A 1 73 ASN 73 73 73 ASN ASN A . n
A 1 74 GLY 74 74 74 GLY GLY A . n
A 1 75 ALA 75 75 75 ALA ALA A . n
A 1 76 VAL 76 76 76 VAL VAL A . n
A 1 77 ARG 77 77 77 ARG ARG A . n
A 1 78 TYR 78 78 78 TYR TYR A . n
A 1 79 THR 79 79 79 THR THR A . n
A 1 80 THR 80 80 80 THR THR A . n
A 1 81 PHE 81 81 81 PHE PHE A . n
A 1 82 GLU 82 82 82 GLU GLU A . n
A 1 83 TYR 83 83 83 TYR TYR A . n
A 1 84 PRO 84 84 84 PRO PRO A . n
A 1 85 ASN 85 85 85 ASN ASN A . n
A 1 86 THR 86 86 86 THR THR A . n
A 1 87 ILE 87 87 87 ILE ILE A . n
A 1 88 SER 88 88 88 SER SER A . n
A 1 89 PHE 89 89 89 PHE PHE A . n
A 1 90 SER 90 90 90 SER SER A . n
A 1 91 CYS 91 91 91 CYS CYS A . n
A 1 92 ASN 92 92 92 ASN ASN A . n
A 1 93 THR 93 93 93 THR THR A . n
A 1 94 GLY 94 94 94 GLY GLY A . n
A 1 95 PHE 95 95 95 PHE PHE A . n
A 1 96 TYR 96 96 96 TYR TYR A . n
A 1 97 LEU 97 97 97 LEU LEU A . n
A 1 98 ASN 98 98 98 ASN ASN A . n
A 1 99 GLY 99 99 99 GLY GLY A . n
A 1 100 ALA 100 100 100 ALA ALA A . n
A 1 101 ASP 101 101 101 ASP ASP A . n
A 1 102 SER 102 102 102 SER SER A . n
A 1 103 ALA 103 103 103 ALA ALA A . n
A 1 104 LYS 104 104 104 LYS LYS A . n
A 1 105 CYS 105 105 105 CYS CYS A . n
A 1 106 THR 106 106 106 THR THR A . n
A 1 107 GLU 107 107 107 GLU GLU A . n
A 1 108 GLU 108 108 108 GLU GLU A . n
A 1 109 GLY 109 109 109 GLY GLY A . n
A 1 110 LYS 110 110 110 LYS LYS A . n
A 1 111 TRP 111 111 111 TRP TRP A . n
A 1 112 SER 112 112 112 SER SER A . n
A 1 113 PRO 113 113 113 PRO PRO A . n
A 1 114 GLU 114 114 114 GLU GLU A . n
A 1 115 LEU 115 115 115 LEU LEU A . n
A 1 116 PRO 116 116 116 PRO PRO A . n
A 1 117 VAL 117 117 117 VAL VAL A . n
A 1 118 CYS 118 118 118 CYS CYS A . n
A 1 119 ALA 119 119 119 ALA ALA A . n
A 1 120 PRO 120 120 120 PRO PRO A . n
A 1 121 ILE 121 121 121 ILE ILE A . n
A 1 122 ILE 122 122 122 ILE ILE A . n
A 1 123 CYS 123 123 123 CYS CYS A . n
A 1 124 PRO 124 124 124 PRO PRO A . n
A 1 125 PRO 125 125 125 PRO PRO A . n
A 1 126 PRO 126 126 126 PRO PRO A . n
A 1 127 SER 127 127 127 SER SER A . n
A 1 128 ILE 128 128 128 ILE ILE A . n
A 1 129 PRO 129 129 129 PRO PRO A . n
A 1 130 THR 130 130 130 THR THR A . n
A 1 131 PHE 131 131 131 PHE PHE A . n
A 1 132 ALA 132 132 132 ALA ALA A . n
A 1 133 THR 133 133 133 THR THR A . n
A 1 134 LEU 134 134 134 LEU LEU A . n
A 1 135 ARG 135 135 135 ARG ARG A . n
A 1 136 VAL 136 136 136 VAL VAL A . n
A 1 137 TYR 137 137 137 TYR TYR A . n
A 1 138 LYS 138 138 138 LYS LYS A . n
A 1 139 PRO 139 139 139 PRO PRO A . n
A 1 140 SER 140 140 140 SER SER A . n
A 1 141 ALA 141 141 141 ALA ALA A . n
A 1 142 GLY 142 142 142 GLY GLY A . n
A 1 143 ASN 143 143 143 ASN ASN A . n
A 1 144 ASN 144 144 144 ASN ASN A . n
A 1 145 SER 145 145 145 SER SER A . n
A 1 146 LEU 146 146 146 LEU LEU A . n
A 1 147 TYR 147 147 147 TYR TYR A . n
A 1 148 ARG 148 148 148 ARG ARG A . n
A 1 149 ASP 149 149 149 ASP ASP A . n
A 1 150 THR 150 150 150 THR THR A . n
A 1 151 ALA 151 151 151 ALA ALA A . n
A 1 152 VAL 152 152 152 VAL VAL A . n
A 1 153 PHE 153 153 153 PHE PHE A . n
A 1 154 GLU 154 154 154 GLU GLU A . n
A 1 155 CYS 155 155 155 CYS CYS A . n
A 1 156 LEU 156 156 156 LEU LEU A . n
A 1 157 PRO 157 157 157 PRO PRO A . n
A 1 158 GLN 158 158 158 GLN GLN A . n
A 1 159 HIS 159 159 159 HIS HIS A . n
A 1 160 ALA 160 160 160 ALA ALA A . n
A 1 161 MET 161 161 161 MET MET A . n
A 1 162 PHE 162 162 162 PHE PHE A . n
A 1 163 GLY 163 163 163 GLY GLY A . n
A 1 164 ASN 164 164 164 ASN ASN A . n
A 1 165 ASP 165 165 165 ASP ASP A . n
A 1 166 THR 166 166 166 THR THR A . n
A 1 167 ILE 167 167 167 ILE ILE A . n
A 1 168 THR 168 168 168 THR THR A . n
A 1 169 CYS 169 169 169 CYS CYS A . n
A 1 170 THR 170 170 170 THR THR A . n
A 1 171 THR 171 171 171 THR THR A . n
A 1 172 HIS 172 172 172 HIS HIS A . n
A 1 173 GLY 173 173 173 GLY GLY A . n
A 1 174 ASN 174 174 174 ASN ASN A . n
A 1 175 TRP 175 175 175 TRP TRP A . n
A 1 176 THR 176 176 176 THR THR A . n
A 1 177 LYS 177 177 177 LYS LYS A . n
A 1 178 LEU 178 178 178 LEU LEU A . n
A 1 179 PRO 179 179 179 PRO PRO A . n
A 1 180 GLU 180 180 180 GLU GLU A . n
A 1 181 CYS 181 181 181 CYS CYS A . n
A 1 182 ARG 182 182 182 ARG ARG A . n
A 1 183 GLU 183 183 183 GLU GLU A . n
A 1 184 VAL 184 184 184 VAL VAL A . n
A 1 185 LYS 185 185 185 LYS LYS A . n
A 1 186 CYS 186 186 186 CYS CYS A . n
A 1 187 PRO 187 187 187 PRO PRO A . n
A 1 188 PHE 188 188 188 PHE PHE A . n
A 1 189 PRO 189 189 189 PRO PRO A . n
A 1 190 SER 190 190 190 SER SER A . n
A 1 191 ARG 191 191 191 ARG ARG A . n
A 1 192 PRO 192 192 192 PRO PRO A . n
A 1 193 ASP 193 193 193 ASP ASP A . n
A 1 194 ASN 194 194 194 ASN ASN A . n
A 1 195 GLY 195 195 195 GLY GLY A . n
A 1 196 PHE 196 196 196 PHE PHE A . n
A 1 197 VAL 197 197 197 VAL VAL A . n
A 1 198 ASN 198 198 198 ASN ASN A . n
A 1 199 TYR 199 199 199 TYR TYR A . n
A 1 200 PRO 200 200 200 PRO PRO A . n
A 1 201 ALA 201 201 201 ALA ALA A . n
A 1 202 LYS 202 202 202 LYS LYS A . n
A 1 203 PRO 203 203 203 PRO PRO A . n
A 1 204 THR 204 204 204 THR THR A . n
A 1 205 LEU 205 205 205 LEU LEU A . n
A 1 206 TYR 206 206 206 TYR TYR A . n
A 1 207 TYR 207 207 207 TYR TYR A . n
A 1 208 LYS 208 208 208 LYS LYS A . n
A 1 209 ASP 209 209 209 ASP ASP A . n
A 1 210 LYS 210 210 210 LYS LYS A . n
A 1 211 ALA 211 211 211 ALA ALA A . n
A 1 212 THR 212 212 212 THR THR A . n
A 1 213 PHE 213 213 213 PHE PHE A . n
A 1 214 GLY 214 214 214 GLY GLY A . n
A 1 215 CYS 215 215 215 CYS CYS A . n
A 1 216 HIS 216 216 216 HIS HIS A . n
A 1 217 ASP 217 217 217 ASP ASP A . n
A 1 218 GLY 218 218 218 GLY GLY A . n
A 1 219 TYR 219 219 219 TYR TYR A . n
A 1 220 SER 220 220 220 SER SER A . n
A 1 221 LEU 221 221 221 LEU LEU A . n
A 1 222 ASP 222 222 222 ASP ASP A . n
A 1 223 GLY 223 223 223 GLY GLY A . n
A 1 224 PRO 224 224 224 PRO PRO A . n
A 1 225 GLU 225 225 225 GLU GLU A . n
A 1 226 GLU 226 226 226 GLU GLU A . n
A 1 227 ILE 227 227 227 ILE ILE A . n
A 1 228 GLU 228 228 228 GLU GLU A . n
A 1 229 CYS 229 229 229 CYS CYS A . n
A 1 230 THR 230 230 230 THR THR A . n
A 1 231 LYS 231 231 231 LYS LYS A . n
A 1 232 LEU 232 232 232 LEU LEU A . n
A 1 233 GLY 233 233 233 GLY GLY A . n
A 1 234 ASN 234 234 234 ASN ASN A . n
A 1 235 TRP 235 235 235 TRP TRP A . n
A 1 236 SER 236 236 236 SER SER A . n
A 1 237 ALA 237 237 237 ALA ALA A . n
A 1 238 MET 238 238 238 MET MET A . n
A 1 239 PRO 239 239 239 PRO PRO A . n
A 1 240 SER 240 240 240 SER SER A . n
A 1 241 CYS 241 241 241 CYS CYS A . n
A 1 242 LYS 242 242 242 LYS LYS A . n
A 1 243 ALA 243 243 243 ALA ALA A . n
A 1 244 SER 244 244 244 SER SER A . n
A 1 245 CYS 245 245 245 CYS CYS A . n
A 1 246 LYS 246 246 246 LYS LYS A . n
A 1 247 VAL 247 247 247 VAL VAL A . n
A 1 248 PRO 248 248 248 PRO PRO A . n
A 1 249 VAL 249 249 249 VAL VAL A . n
A 1 250 LYS 250 250 250 LYS LYS A . n
A 1 251 LYS 251 251 251 LYS LYS A . n
A 1 252 ALA 252 252 252 ALA ALA A . n
A 1 253 THR 253 253 253 THR THR A . n
A 1 254 VAL 254 254 254 VAL VAL A . n
A 1 255 VAL 255 255 255 VAL VAL A . n
A 1 256 TYR 256 256 256 TYR TYR A . n
A 1 257 GLN 257 257 257 GLN GLN A . n
A 1 258 GLY 258 258 258 GLY GLY A . n
A 1 259 GLU 259 259 259 GLU GLU A . n
A 1 260 ARG 260 260 260 ARG ARG A . n
A 1 261 VAL 261 261 261 VAL VAL A . n
A 1 262 LYS 262 262 262 LYS LYS A . n
A 1 263 ILE 263 263 263 ILE ILE A . n
A 1 264 GLN 264 264 264 GLN GLN A . n
A 1 265 GLU 265 265 265 GLU GLU A . n
A 1 266 LYS 266 266 266 LYS LYS A . n
A 1 267 PHE 267 267 267 PHE PHE A . n
A 1 268 LYS 268 268 268 LYS LYS A . n
A 1 269 ASN 269 269 269 ASN ASN A . n
A 1 270 GLY 270 270 270 GLY GLY A . n
A 1 271 MET 271 271 271 MET MET A . n
A 1 272 LEU 272 272 272 LEU LEU A . n
A 1 273 HIS 273 273 273 HIS HIS A . n
A 1 274 GLY 274 274 274 GLY GLY A . n
A 1 275 ASP 275 275 275 ASP ASP A . n
A 1 276 LYS 276 276 276 LYS LYS A . n
A 1 277 VAL 277 277 277 VAL VAL A . n
A 1 278 SER 278 278 278 SER SER A . n
A 1 279 PHE 279 279 279 PHE PHE A . n
A 1 280 PHE 280 280 280 PHE PHE A . n
A 1 281 CYS 281 281 281 CYS CYS A . n
A 1 282 LYS 282 282 282 LYS LYS A . n
A 1 283 ASN 283 283 283 ASN ASN A . n
A 1 284 LYS 284 284 284 LYS LYS A . n
A 1 285 GLU 285 285 285 GLU GLU A . n
A 1 286 LYS 286 286 286 LYS LYS A . n
A 1 287 LYS 287 287 287 LYS LYS A . n
A 1 288 CYS 288 288 288 CYS CYS A . n
A 1 289 SER 289 289 289 SER SER A . n
A 1 290 TYR 290 290 290 TYR TYR A . n
A 1 291 THR 291 291 291 THR THR A . n
A 1 292 GLU 292 292 292 GLU GLU A . n
A 1 293 ASP 293 293 293 ASP ASP A . n
A 1 294 ALA 294 294 294 ALA ALA A . n
A 1 295 GLN 295 295 295 GLN GLN A . n
A 1 296 CYS 296 296 296 CYS CYS A . n
A 1 297 ILE 297 297 297 ILE ILE A . n
A 1 298 ASP 298 298 298 ASP ASP A . n
A 1 299 GLY 299 299 299 GLY GLY A . n
A 1 300 THR 300 300 300 THR THR A . n
A 1 301 ILE 301 301 301 ILE ILE A . n
A 1 302 GLU 302 302 302 GLU GLU A . n
A 1 303 VAL 303 303 303 VAL VAL A . n
A 1 304 PRO 304 304 304 PRO PRO A . n
A 1 305 LYS 305 305 305 LYS LYS A . n
A 1 306 CYS 306 306 306 CYS CYS A . n
A 1 307 PHE 307 307 307 PHE PHE A . n
A 1 308 LYS 308 308 308 LYS LYS A . n
A 1 309 GLU 309 309 309 GLU GLU A . n
A 1 310 HIS 310 310 310 HIS HIS A . n
A 1 311 THR 311 318 318 THR THR A . n
A 1 312 ASP 312 319 319 ASP ASP A . n
A 1 313 ALA 313 320 320 ALA ALA A . n
A 1 314 SER 314 321 321 SER SER A . n
A 1 315 ASP 315 322 322 ASP ASP A . n
A 1 316 VAL 316 323 323 VAL VAL A . n
A 1 317 LYS 317 324 324 LYS LYS A . n
A 1 318 PRO 318 325 325 PRO PRO A . n
A 1 319 CYS 319 326 326 CYS CYS A . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 NAG 1 B NAG 1 ? NAG 1741 n
B 2 NAG 2 B NAG 2 ? NAG 1742 n
B 2 MAN 3 B MAN 3 ? MAN 1743 n
C 3 NAG 1 C NAG 1 ? NAG 2341 n
C 3 NAG 2 C NAG 2 ? NAG 2342 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG 1 1431 1431 NAG NAG A .
E 4 NAG 1 1641 1641 NAG NAG A .
F 5 HOH 1 602 602 HOH WAT A .
F 5 HOH 2 605 605 HOH WAT A .
F 5 HOH 3 606 606 HOH WAT A .
F 5 HOH 4 607 607 HOH WAT A .
F 5 HOH 5 610 610 HOH WAT A .
F 5 HOH 6 612 612 HOH WAT A .
F 5 HOH 7 614 614 HOH WAT A .
F 5 HOH 8 615 615 HOH WAT A .
F 5 HOH 9 618 618 HOH WAT A .
F 5 HOH 10 619 619 HOH WAT A .
F 5 HOH 11 623 623 HOH WAT A .
F 5 HOH 12 624 624 HOH WAT A .
F 5 HOH 13 628 628 HOH WAT A .
F 5 HOH 14 629 629 HOH WAT A .
F 5 HOH 15 631 631 HOH WAT A .
F 5 HOH 16 633 633 HOH WAT A .
F 5 HOH 17 634 634 HOH WAT A .
F 5 HOH 18 635 635 HOH WAT A .
F 5 HOH 19 637 637 HOH WAT A .
F 5 HOH 20 640 640 HOH WAT A .
F 5 HOH 21 643 643 HOH WAT A .
F 5 HOH 22 645 645 HOH WAT A .
F 5 HOH 23 648 648 HOH WAT A .
F 5 HOH 24 649 649 HOH WAT A .
F 5 HOH 25 657 657 HOH WAT A .
F 5 HOH 26 663 663 HOH WAT A .
F 5 HOH 27 666 666 HOH WAT A .
F 5 HOH 28 674 674 HOH WAT A .
F 5 HOH 29 675 675 HOH WAT A .
F 5 HOH 30 679 679 HOH WAT A .
F 5 HOH 31 687 687 HOH WAT A .
F 5 HOH 32 688 688 HOH WAT A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
MOSFLM 'data reduction' . ? 1
TRUNCATE 'data reduction' . ? 2
SOLVE phasing . ? 3
CNS refinement . ? 4
CCP4 'data scaling' '(TRUNCATE)' ? 5
#
_cell.entry_id 1QUB
_cell.length_a 161.170
_cell.length_b 166.490
_cell.length_c 114.510
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1QUB
_symmetry.space_group_name_H-M 'C 2 2 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 20
#
_exptl.entry_id 1QUB
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 8.5
_exptl_crystal.density_percent_sol 86.0
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 277
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.5
_exptl_crystal_grow.pdbx_details
;1.5 M ammonium sulphate 20 mM cadmium chloride 2 % (v/v) glycerol 100 mM HEPES 1.5 M AMMONIUM PHOSPHATE 100 MM SODIUM ACETATE, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
;
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100.0
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type ADSC
_diffrn_detector.pdbx_collection_date 1998-09-27
_diffrn_detector.details 'TOROIDAL MIRROR'
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'SI(333)'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9354
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE ID14-4'
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline ID14-4
_diffrn_source.pdbx_wavelength 0.9354
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1QUB
_reflns.observed_criterion_sigma_I -3.0
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 40.0
_reflns.d_resolution_high 2.7
_reflns.number_obs 42497
_reflns.number_all 42497
_reflns.percent_possible_obs 99.8
_reflns.pdbx_Rmerge_I_obs 0.089
_reflns.pdbx_Rsym_value 0.089
_reflns.pdbx_netI_over_sigmaI 5.8
_reflns.B_iso_Wilson_estimate 46.7
_reflns.pdbx_redundancy 3.8
_reflns.R_free_details ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 2.70
_reflns_shell.d_res_low 2.85
_reflns_shell.percent_possible_all 99.6
_reflns_shell.Rmerge_I_obs 0.363
_reflns_shell.pdbx_Rsym_value 0.364
_reflns_shell.meanI_over_sigI_obs 2.0
_reflns_shell.pdbx_redundancy 3.7
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 6122
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 1QUB
_refine.ls_number_reflns_obs 42451
_refine.ls_number_reflns_all 42451
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_d_res_low 40.0
_refine.ls_d_res_high 2.70
_refine.ls_percent_reflns_obs 99.7
_refine.ls_R_factor_obs 0.25
_refine.ls_R_factor_all 0.25
_refine.ls_R_factor_R_work 0.249
_refine.ls_R_factor_R_free 0.269
_refine.ls_R_factor_R_free_error 0.006
_refine.ls_R_factor_R_free_error_details 0.006
_refine.ls_percent_reflns_R_free 4.9
_refine.ls_number_reflns_R_free 2082
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean 51.2
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details 'FLAT MODEL'
_refine.solvent_model_param_ksol 0.371246
_refine.solvent_model_param_bsol 34.7939
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'Used maximum likelihood target using amplitudes'
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct MIRAS
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'Engh & Huber'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details random
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 1QUB
_refine_analyze.Luzzati_coordinate_error_obs 0.41
_refine_analyze.Luzzati_sigma_a_obs 0.39
_refine_analyze.Luzzati_d_res_low_obs 40.0
_refine_analyze.Luzzati_coordinate_error_free 0.44
_refine_analyze.Luzzati_sigma_a_free 0.37
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 2480
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 95
_refine_hist.number_atoms_solvent 32
_refine_hist.number_atoms_total 2607
_refine_hist.d_res_high 2.70
_refine_hist.d_res_low 40.0
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
c_bond_d .019 ? ? ? 'X-RAY DIFFRACTION' ?
c_angle_deg 1.9 ? ? ? 'X-RAY DIFFRACTION' ?
c_dihedral_angle_d 25.3 ? ? ? 'X-RAY DIFFRACTION' ?
c_improper_angle_d 1.35 ? ? ? 'X-RAY DIFFRACTION' ?
c_mcbond_it 1.65 1.50 ? ? 'X-RAY DIFFRACTION' ?
c_mcangle_it 2.82 2.00 ? ? 'X-RAY DIFFRACTION' ?
c_scbond_it 3.41 2.00 ? ? 'X-RAY DIFFRACTION' ?
c_scangle_it 4.80 2.50 ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 6
_refine_ls_shell.d_res_high 2.70
_refine_ls_shell.d_res_low 2.87
_refine_ls_shell.number_reflns_R_work 6631
_refine_ls_shell.R_factor_R_work 0.399
_refine_ls_shell.percent_reflns_obs 100.0
_refine_ls_shell.R_factor_R_free 0.399
_refine_ls_shell.R_factor_R_free_error 0.020
_refine_ls_shell.percent_reflns_R_free 5.2
_refine_ls_shell.number_reflns_R_free 363
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
loop_
_pdbx_xplor_file.serial_no
_pdbx_xplor_file.param_file
_pdbx_xplor_file.topol_file
_pdbx_xplor_file.pdbx_refine_id
1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION'
2 CARBOHYDRATE.PARAM CARBOHYDRATE.TOP 'X-RAY DIFFRACTION'
3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION'
#
_database_PDB_matrix.entry_id 1QUB
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1QUB
_struct.title
'CRYSTAL STRUCTURE OF THE GLYCOSYLATED FIVE-DOMAIN HUMAN BETA2-GLYCOPROTEIN I PURIFIED FROM BLOOD PLASMA'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1QUB
_struct_keywords.pdbx_keywords 'MEMBRANE ADHESION'
_struct_keywords.text
'SHORT CONSENSUS REPEAT, SUSHI, COMPLEMENT CONTROL PROTEIN, N-GLYCOSYLATION, MULTI-DOMAIN, MEMBRANE ADHESION'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 4 ?
F N N 5 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code APOH_HUMAN
_struct_ref.entity_id 1
_struct_ref.pdbx_db_accession P02749
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1QUB
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 319
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P02749
_struct_ref_seq.db_align_beg 20
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 345
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 326
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 ILE A 263 ? PHE A 267 ? ILE A 263 PHE A 267 1 ? 5
HELX_P HELX_P2 2 ASP A 312 ? VAL A 316 ? ASP A 319 VAL A 323 5 ? 5
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 47 SG ? ? A CYS 4 A CYS 47 1_555 ? ? ? ? ? ? ? 2.098 ? ?
disulf2 disulf ? ? A CYS 32 SG ? ? ? 1_555 A CYS 60 SG ? ? A CYS 32 A CYS 60 1_555 ? ? ? ? ? ? ? 2.100 ? ?
disulf3 disulf ? ? A CYS 65 SG ? ? ? 1_555 A CYS 105 SG ? ? A CYS 65 A CYS 105 1_555 ? ? ? ? ? ? ? 2.076 ? ?
disulf4 disulf ? ? A CYS 91 SG ? ? ? 1_555 A CYS 118 SG ? ? A CYS 91 A CYS 118 1_555 ? ? ? ? ? ? ? 2.106 ? ?
disulf5 disulf ? ? A CYS 123 SG ? ? ? 1_555 A CYS 169 SG ? ? A CYS 123 A CYS 169 1_555 ? ? ? ? ? ? ? 2.069 ? ?
disulf6 disulf ? ? A CYS 155 SG ? ? ? 1_555 A CYS 181 SG ? ? A CYS 155 A CYS 181 1_555 ? ? ? ? ? ? ? 2.113 ? ?
disulf7 disulf ? ? A CYS 186 SG ? ? ? 1_555 A CYS 229 SG ? ? A CYS 186 A CYS 229 1_555 ? ? ? ? ? ? ? 2.661 ? ?
disulf8 disulf ? ? A CYS 215 SG ? ? ? 1_555 A CYS 241 SG ? ? A CYS 215 A CYS 241 1_555 ? ? ? ? ? ? ? 2.107 ? ?
disulf9 disulf ? ? A CYS 245 SG ? ? ? 1_555 A CYS 296 SG ? ? A CYS 245 A CYS 296 1_555 ? ? ? ? ? ? ? 2.097 ? ?
disulf10 disulf ? ? A CYS 281 SG ? ? ? 1_555 A CYS 306 SG ? ? A CYS 281 A CYS 306 1_555 ? ? ? ? ? ? ? 2.088 ? ?
disulf11 disulf ? ? A CYS 288 SG ? ? ? 1_555 A CYS 319 SG ? ? A CYS 288 A CYS 326 1_555 ? ? ? ? ? ? ? 2.060 ? ?
covale1 covale one ? A ASN 143 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 143 A NAG 1431 1_555 ? ? ? ? ? ? ? 1.459 ? N-Glycosylation
covale2 covale one ? A ASN 164 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 164 A NAG 1641 1_555 ? ? ? ? ? ? ? 1.444 ? N-Glycosylation
covale3 covale one ? A ASN 174 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 174 B NAG 1 1_555 ? ? ? ? ? ? ? 1.445 ? N-Glycosylation
covale4 covale one ? A ASN 234 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 234 C NAG 1 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation
covale5 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.386 ? ?
covale6 covale both ? B NAG . O4 ? ? ? 1_555 B MAN . C1 ? ? B NAG 2 B MAN 3 1_555 ? ? ? ? ? ? ? 1.416 ? ?
covale7 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.397 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 NAG B . ? ASN A 174 ? NAG B 1 ? 1_555 ASN A 174 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
2 NAG C . ? ASN A 234 ? NAG C 1 ? 1_555 ASN A 234 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
3 NAG D . ? ASN A 143 ? NAG A 1431 ? 1_555 ASN A 143 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
4 NAG E . ? ASN A 164 ? NAG A 1641 ? 1_555 ASN A 164 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
5 CYS A 4 ? CYS A 47 ? CYS A 4 ? 1_555 CYS A 47 ? 1_555 SG SG . . . None 'Disulfide bridge'
6 CYS A 32 ? CYS A 60 ? CYS A 32 ? 1_555 CYS A 60 ? 1_555 SG SG . . . None 'Disulfide bridge'
7 CYS A 65 ? CYS A 105 ? CYS A 65 ? 1_555 CYS A 105 ? 1_555 SG SG . . . None 'Disulfide bridge'
8 CYS A 91 ? CYS A 118 ? CYS A 91 ? 1_555 CYS A 118 ? 1_555 SG SG . . . None 'Disulfide bridge'
9 CYS A 123 ? CYS A 169 ? CYS A 123 ? 1_555 CYS A 169 ? 1_555 SG SG . . . None 'Disulfide bridge'
10 CYS A 155 ? CYS A 181 ? CYS A 155 ? 1_555 CYS A 181 ? 1_555 SG SG . . . None 'Disulfide bridge'
11 CYS A 186 ? CYS A 229 ? CYS A 186 ? 1_555 CYS A 229 ? 1_555 SG SG . . . None 'Disulfide bridge'
12 CYS A 215 ? CYS A 241 ? CYS A 215 ? 1_555 CYS A 241 ? 1_555 SG SG . . . None 'Disulfide bridge'
13 CYS A 245 ? CYS A 296 ? CYS A 245 ? 1_555 CYS A 296 ? 1_555 SG SG . . . None 'Disulfide bridge'
14 CYS A 281 ? CYS A 306 ? CYS A 281 ? 1_555 CYS A 306 ? 1_555 SG SG . . . None 'Disulfide bridge'
15 CYS A 288 ? CYS A 319 ? CYS A 288 ? 1_555 CYS A 326 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 VAL 16 A . ? VAL 16 A PRO 17 A ? PRO 17 A 1 0.66
2 TYR 83 A . ? TYR 83 A PRO 84 A ? PRO 84 A 1 -0.47
3 SER 112 A . ? SER 112 A PRO 113 A ? PRO 113 A 1 0.68
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 2 ?
B ? 3 ?
C ? 2 ?
D ? 4 ?
E ? 2 ?
F ? 2 ?
G ? 3 ?
H ? 2 ?
I ? 2 ?
J ? 3 ?
K ? 2 ?
L ? 2 ?
M ? 2 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? anti-parallel
C 1 2 ? anti-parallel
D 1 2 ? anti-parallel
D 2 3 ? anti-parallel
D 3 4 ? anti-parallel
E 1 2 ? anti-parallel
F 1 2 ? anti-parallel
G 1 2 ? anti-parallel
G 2 3 ? anti-parallel
H 1 2 ? anti-parallel
I 1 2 ? anti-parallel
J 1 2 ? anti-parallel
J 2 3 ? anti-parallel
K 1 2 ? anti-parallel
L 1 2 ? anti-parallel
M 1 2 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 CYS A 4 ? PRO A 5 ? CYS A 4 PRO A 5
A 2 PHE A 21 ? TYR A 22 ? PHE A 21 TYR A 22
B 1 SER A 13 ? VAL A 16 ? SER A 13 VAL A 16
B 2 GLU A 27 ? CYS A 32 ? GLU A 27 CYS A 32
B 3 ARG A 43 ? ILE A 46 ? ARG A 43 ILE A 46
C 1 TYR A 36 ? SER A 38 ? TYR A 36 SER A 38
C 2 CYS A 60 ? PRO A 62 ? CYS A 60 PRO A 62
D 1 GLY A 74 ? ARG A 77 ? GLY A 74 ARG A 77
D 2 THR A 86 ? CYS A 91 ? THR A 86 CYS A 91
D 3 SER A 102 ? CYS A 105 ? SER A 102 CYS A 105
D 4 TRP A 111 ? SER A 112 ? TRP A 111 SER A 112
E 1 PHE A 95 ? ASN A 98 ? PHE A 95 ASN A 98
E 2 VAL A 117 ? PRO A 120 ? VAL A 117 PRO A 120
F 1 ILE A 122 ? CYS A 123 ? ILE A 122 CYS A 123
F 2 SER A 145 ? LEU A 146 ? SER A 145 LEU A 146
G 1 ALA A 132 ? VAL A 136 ? ALA A 132 VAL A 136
G 2 THR A 150 ? CYS A 155 ? THR A 150 CYS A 155
G 3 THR A 166 ? THR A 168 ? THR A 166 THR A 168
H 1 HIS A 159 ? PHE A 162 ? HIS A 159 PHE A 162
H 2 GLU A 180 ? GLU A 183 ? GLU A 180 GLU A 183
I 1 LYS A 185 ? CYS A 186 ? LYS A 185 CYS A 186
I 2 LEU A 205 ? TYR A 206 ? LEU A 205 TYR A 206
J 1 GLY A 195 ? ASN A 198 ? GLY A 195 ASN A 198
J 2 LYS A 210 ? CYS A 215 ? LYS A 210 CYS A 215
J 3 GLU A 226 ? GLU A 228 ? GLU A 226 GLU A 228
K 1 TYR A 219 ? LEU A 221 ? TYR A 219 LEU A 221
K 2 CYS A 241 ? ALA A 243 ? CYS A 241 ALA A 243
L 1 THR A 253 ? VAL A 255 ? THR A 253 VAL A 255
L 2 ARG A 260 ? LYS A 262 ? ARG A 260 LYS A 262
M 1 LYS A 276 ? ASN A 283 ? LYS A 276 ASN A 283
M 2 CYS A 288 ? GLN A 295 ? CYS A 288 GLN A 295
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 O CYS A 4 ? O CYS A 4 N TYR A 22 ? N TYR A 22
B 1 2 O VAL A 16 ? O VAL A 16 N THR A 29 ? N THR A 29
B 2 3 N TYR A 30 ? N TYR A 30 O ARG A 43 ? O ARG A 43
C 1 2 O VAL A 37 ? O VAL A 37 N THR A 61 ? N THR A 61
D 1 2 N ARG A 77 ? N ARG A 77 O SER A 88 ? O SER A 88
D 2 3 N ILE A 87 ? N ILE A 87 O ALA A 103 ? O ALA A 103
D 3 4 N LYS A 104 ? N LYS A 104 O SER A 112 ? O SER A 112
E 1 2 N ASN A 98 ? N ASN A 98 O VAL A 117 ? O VAL A 117
F 1 2 O CYS A 123 ? O CYS A 123 N SER A 145 ? N SER A 145
G 1 2 O VAL A 136 ? O VAL A 136 N VAL A 152 ? N VAL A 152
G 2 3 O ALA A 151 ? O ALA A 151 N ILE A 167 ? N ILE A 167
H 1 2 N PHE A 162 ? N PHE A 162 O GLU A 180 ? O GLU A 180
I 1 2 N CYS A 186 ? N CYS A 186 O LEU A 205 ? O LEU A 205
J 1 2 N ASN A 198 ? N ASN A 198 O THR A 212 ? O THR A 212
J 2 3 O ALA A 211 ? O ALA A 211 N ILE A 227 ? N ILE A 227
K 1 2 O SER A 220 ? O SER A 220 N LYS A 242 ? N LYS A 242
L 1 2 N VAL A 254 ? N VAL A 254 O VAL A 261 ? O VAL A 261
M 1 2 N ASN A 283 ? N ASN A 283 O CYS A 288 ? O CYS A 288
#
_pdbx_entry_details.entry_id 1QUB
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
_pdbx_validate_rmsd_angle.id 1
_pdbx_validate_rmsd_angle.PDB_model_num 1
_pdbx_validate_rmsd_angle.auth_atom_id_1 C
_pdbx_validate_rmsd_angle.auth_asym_id_1 A
_pdbx_validate_rmsd_angle.auth_comp_id_1 LEU
_pdbx_validate_rmsd_angle.auth_seq_id_1 10
_pdbx_validate_rmsd_angle.PDB_ins_code_1 ?
_pdbx_validate_rmsd_angle.label_alt_id_1 ?
_pdbx_validate_rmsd_angle.auth_atom_id_2 N
_pdbx_validate_rmsd_angle.auth_asym_id_2 A
_pdbx_validate_rmsd_angle.auth_comp_id_2 PRO
_pdbx_validate_rmsd_angle.auth_seq_id_2 11
_pdbx_validate_rmsd_angle.PDB_ins_code_2 ?
_pdbx_validate_rmsd_angle.label_alt_id_2 ?
_pdbx_validate_rmsd_angle.auth_atom_id_3 CA
_pdbx_validate_rmsd_angle.auth_asym_id_3 A
_pdbx_validate_rmsd_angle.auth_comp_id_3 PRO
_pdbx_validate_rmsd_angle.auth_seq_id_3 11
_pdbx_validate_rmsd_angle.PDB_ins_code_3 ?
_pdbx_validate_rmsd_angle.label_alt_id_3 ?
_pdbx_validate_rmsd_angle.angle_value 129.06
_pdbx_validate_rmsd_angle.angle_target_value 119.30
_pdbx_validate_rmsd_angle.angle_deviation 9.76
_pdbx_validate_rmsd_angle.angle_standard_deviation 1.50
_pdbx_validate_rmsd_angle.linker_flag Y
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 PRO A 11 ? ? -15.30 -62.29
2 1 PHE A 81 ? ? -101.59 49.92
3 1 PRO A 113 ? ? -69.38 -172.69
4 1 PHE A 131 ? ? -109.17 50.10
5 1 ARG A 135 ? ? -78.55 -73.00
6 1 ALA A 141 ? ? -172.94 86.89
7 1 ARG A 148 ? ? 79.93 -7.41
8 1 PRO A 200 ? ? -33.79 141.17
9 1 ALA A 201 ? ? -73.98 42.95
10 1 LYS A 208 ? ? 75.03 -9.03
11 1 ALA A 252 ? ? -177.54 144.96
12 1 ASN A 269 ? ? -98.13 31.24
13 1 GLU A 285 ? ? -63.76 -73.79
14 1 ASP A 319 ? ? 61.23 108.61
#
loop_
_pdbx_validate_chiral.id
_pdbx_validate_chiral.PDB_model_num
_pdbx_validate_chiral.auth_atom_id
_pdbx_validate_chiral.label_alt_id
_pdbx_validate_chiral.auth_asym_id
_pdbx_validate_chiral.auth_comp_id
_pdbx_validate_chiral.auth_seq_id
_pdbx_validate_chiral.PDB_ins_code
_pdbx_validate_chiral.details
_pdbx_validate_chiral.omega
1 1 C1 ? B MAN 3 ? 'WRONG HAND' .
2 1 C1 ? C NAG 2 ? 'WRONG HAND' .
#
_pdbx_validate_polymer_linkage.id 1
_pdbx_validate_polymer_linkage.PDB_model_num 1
_pdbx_validate_polymer_linkage.auth_atom_id_1 C
_pdbx_validate_polymer_linkage.auth_asym_id_1 A
_pdbx_validate_polymer_linkage.auth_comp_id_1 HIS
_pdbx_validate_polymer_linkage.auth_seq_id_1 310
_pdbx_validate_polymer_linkage.PDB_ins_code_1 ?
_pdbx_validate_polymer_linkage.label_alt_id_1 ?
_pdbx_validate_polymer_linkage.auth_atom_id_2 N
_pdbx_validate_polymer_linkage.auth_asym_id_2 A
_pdbx_validate_polymer_linkage.auth_comp_id_2 THR
_pdbx_validate_polymer_linkage.auth_seq_id_2 318
_pdbx_validate_polymer_linkage.PDB_ins_code_2 ?
_pdbx_validate_polymer_linkage.label_alt_id_2 ?
_pdbx_validate_polymer_linkage.dist 9.78
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A ASN 143 A ASN 143 ? ASN 'GLYCOSYLATION SITE'
2 A ASN 164 A ASN 164 ? ASN 'GLYCOSYLATION SITE'
3 A ASN 174 A ASN 174 ? ASN 'GLYCOSYLATION SITE'
4 A ASN 234 A ASN 234 ? ASN 'GLYCOSYLATION SITE'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CYS N N N N 74
CYS CA C N R 75
CYS C C N N 76
CYS O O N N 77
CYS CB C N N 78
CYS SG S N N 79
CYS OXT O N N 80
CYS H H N N 81
CYS H2 H N N 82
CYS HA H N N 83
CYS HB2 H N N 84
CYS HB3 H N N 85
CYS HG H N N 86
CYS HXT H N N 87
GLN N N N N 88
GLN CA C N S 89
GLN C C N N 90
GLN O O N N 91
GLN CB C N N 92
GLN CG C N N 93
GLN CD C N N 94
GLN OE1 O N N 95
GLN NE2 N N N 96
GLN OXT O N N 97
GLN H H N N 98
GLN H2 H N N 99
GLN HA H N N 100
GLN HB2 H N N 101
GLN HB3 H N N 102
GLN HG2 H N N 103
GLN HG3 H N N 104
GLN HE21 H N N 105
GLN HE22 H N N 106
GLN HXT H N N 107
GLU N N N N 108
GLU CA C N S 109
GLU C C N N 110
GLU O O N N 111
GLU CB C N N 112
GLU CG C N N 113
GLU CD C N N 114
GLU OE1 O N N 115
GLU OE2 O N N 116
GLU OXT O N N 117
GLU H H N N 118
GLU H2 H N N 119
GLU HA H N N 120
GLU HB2 H N N 121
GLU HB3 H N N 122
GLU HG2 H N N 123
GLU HG3 H N N 124
GLU HE2 H N N 125
GLU HXT H N N 126
GLY N N N N 127
GLY CA C N N 128
GLY C C N N 129
GLY O O N N 130
GLY OXT O N N 131
GLY H H N N 132
GLY H2 H N N 133
GLY HA2 H N N 134
GLY HA3 H N N 135
GLY HXT H N N 136
HIS N N N N 137
HIS CA C N S 138
HIS C C N N 139
HIS O O N N 140
HIS CB C N N 141
HIS CG C Y N 142
HIS ND1 N Y N 143
HIS CD2 C Y N 144
HIS CE1 C Y N 145
HIS NE2 N Y N 146
HIS OXT O N N 147
HIS H H N N 148
HIS H2 H N N 149
HIS HA H N N 150
HIS HB2 H N N 151
HIS HB3 H N N 152
HIS HD1 H N N 153
HIS HD2 H N N 154
HIS HE1 H N N 155
HIS HE2 H N N 156
HIS HXT H N N 157
HOH O O N N 158
HOH H1 H N N 159
HOH H2 H N N 160
ILE N N N N 161
ILE CA C N S 162
ILE C C N N 163
ILE O O N N 164
ILE CB C N S 165
ILE CG1 C N N 166
ILE CG2 C N N 167
ILE CD1 C N N 168
ILE OXT O N N 169
ILE H H N N 170
ILE H2 H N N 171
ILE HA H N N 172
ILE HB H N N 173
ILE HG12 H N N 174
ILE HG13 H N N 175
ILE HG21 H N N 176
ILE HG22 H N N 177
ILE HG23 H N N 178
ILE HD11 H N N 179
ILE HD12 H N N 180
ILE HD13 H N N 181
ILE HXT H N N 182
LEU N N N N 183
LEU CA C N S 184
LEU C C N N 185
LEU O O N N 186
LEU CB C N N 187
LEU CG C N N 188
LEU CD1 C N N 189
LEU CD2 C N N 190
LEU OXT O N N 191
LEU H H N N 192
LEU H2 H N N 193
LEU HA H N N 194
LEU HB2 H N N 195
LEU HB3 H N N 196
LEU HG H N N 197
LEU HD11 H N N 198
LEU HD12 H N N 199
LEU HD13 H N N 200
LEU HD21 H N N 201
LEU HD22 H N N 202
LEU HD23 H N N 203
LEU HXT H N N 204
LYS N N N N 205
LYS CA C N S 206
LYS C C N N 207
LYS O O N N 208
LYS CB C N N 209
LYS CG C N N 210
LYS CD C N N 211
LYS CE C N N 212
LYS NZ N N N 213
LYS OXT O N N 214
LYS H H N N 215
LYS H2 H N N 216
LYS HA H N N 217
LYS HB2 H N N 218
LYS HB3 H N N 219
LYS HG2 H N N 220
LYS HG3 H N N 221
LYS HD2 H N N 222
LYS HD3 H N N 223
LYS HE2 H N N 224
LYS HE3 H N N 225
LYS HZ1 H N N 226
LYS HZ2 H N N 227
LYS HZ3 H N N 228
LYS HXT H N N 229
MAN C1 C N S 230
MAN C2 C N S 231
MAN C3 C N S 232
MAN C4 C N S 233
MAN C5 C N R 234
MAN C6 C N N 235
MAN O1 O N N 236
MAN O2 O N N 237
MAN O3 O N N 238
MAN O4 O N N 239
MAN O5 O N N 240
MAN O6 O N N 241
MAN H1 H N N 242
MAN H2 H N N 243
MAN H3 H N N 244
MAN H4 H N N 245
MAN H5 H N N 246
MAN H61 H N N 247
MAN H62 H N N 248
MAN HO1 H N N 249
MAN HO2 H N N 250
MAN HO3 H N N 251
MAN HO4 H N N 252
MAN HO6 H N N 253
MET N N N N 254
MET CA C N S 255
MET C C N N 256
MET O O N N 257
MET CB C N N 258
MET CG C N N 259
MET SD S N N 260
MET CE C N N 261
MET OXT O N N 262
MET H H N N 263
MET H2 H N N 264
MET HA H N N 265
MET HB2 H N N 266
MET HB3 H N N 267
MET HG2 H N N 268
MET HG3 H N N 269
MET HE1 H N N 270
MET HE2 H N N 271
MET HE3 H N N 272
MET HXT H N N 273
NAG C1 C N R 274
NAG C2 C N R 275
NAG C3 C N R 276
NAG C4 C N S 277
NAG C5 C N R 278
NAG C6 C N N 279
NAG C7 C N N 280
NAG C8 C N N 281
NAG N2 N N N 282
NAG O1 O N N 283
NAG O3 O N N 284
NAG O4 O N N 285
NAG O5 O N N 286
NAG O6 O N N 287
NAG O7 O N N 288
NAG H1 H N N 289
NAG H2 H N N 290
NAG H3 H N N 291
NAG H4 H N N 292
NAG H5 H N N 293
NAG H61 H N N 294
NAG H62 H N N 295
NAG H81 H N N 296
NAG H82 H N N 297
NAG H83 H N N 298
NAG HN2 H N N 299
NAG HO1 H N N 300
NAG HO3 H N N 301
NAG HO4 H N N 302
NAG HO6 H N N 303
PHE N N N N 304
PHE CA C N S 305
PHE C C N N 306
PHE O O N N 307
PHE CB C N N 308
PHE CG C Y N 309
PHE CD1 C Y N 310
PHE CD2 C Y N 311
PHE CE1 C Y N 312
PHE CE2 C Y N 313
PHE CZ C Y N 314
PHE OXT O N N 315
PHE H H N N 316
PHE H2 H N N 317
PHE HA H N N 318
PHE HB2 H N N 319
PHE HB3 H N N 320
PHE HD1 H N N 321
PHE HD2 H N N 322
PHE HE1 H N N 323
PHE HE2 H N N 324
PHE HZ H N N 325
PHE HXT H N N 326
PRO N N N N 327
PRO CA C N S 328
PRO C C N N 329
PRO O O N N 330
PRO CB C N N 331
PRO CG C N N 332
PRO CD C N N 333
PRO OXT O N N 334
PRO H H N N 335
PRO HA H N N 336
PRO HB2 H N N 337
PRO HB3 H N N 338
PRO HG2 H N N 339
PRO HG3 H N N 340
PRO HD2 H N N 341
PRO HD3 H N N 342
PRO HXT H N N 343
SER N N N N 344
SER CA C N S 345
SER C C N N 346
SER O O N N 347
SER CB C N N 348
SER OG O N N 349
SER OXT O N N 350
SER H H N N 351
SER H2 H N N 352
SER HA H N N 353
SER HB2 H N N 354
SER HB3 H N N 355
SER HG H N N 356
SER HXT H N N 357
THR N N N N 358
THR CA C N S 359
THR C C N N 360
THR O O N N 361
THR CB C N R 362
THR OG1 O N N 363
THR CG2 C N N 364
THR OXT O N N 365
THR H H N N 366
THR H2 H N N 367
THR HA H N N 368
THR HB H N N 369
THR HG1 H N N 370
THR HG21 H N N 371
THR HG22 H N N 372
THR HG23 H N N 373
THR HXT H N N 374
TRP N N N N 375
TRP CA C N S 376
TRP C C N N 377
TRP O O N N 378
TRP CB C N N 379
TRP CG C Y N 380
TRP CD1 C Y N 381
TRP CD2 C Y N 382
TRP NE1 N Y N 383
TRP CE2 C Y N 384
TRP CE3 C Y N 385
TRP CZ2 C Y N 386
TRP CZ3 C Y N 387
TRP CH2 C Y N 388
TRP OXT O N N 389
TRP H H N N 390
TRP H2 H N N 391
TRP HA H N N 392
TRP HB2 H N N 393
TRP HB3 H N N 394
TRP HD1 H N N 395
TRP HE1 H N N 396
TRP HE3 H N N 397
TRP HZ2 H N N 398
TRP HZ3 H N N 399
TRP HH2 H N N 400
TRP HXT H N N 401
TYR N N N N 402
TYR CA C N S 403
TYR C C N N 404
TYR O O N N 405
TYR CB C N N 406
TYR CG C Y N 407
TYR CD1 C Y N 408
TYR CD2 C Y N 409
TYR CE1 C Y N 410
TYR CE2 C Y N 411
TYR CZ C Y N 412
TYR OH O N N 413
TYR OXT O N N 414
TYR H H N N 415
TYR H2 H N N 416
TYR HA H N N 417
TYR HB2 H N N 418
TYR HB3 H N N 419
TYR HD1 H N N 420
TYR HD2 H N N 421
TYR HE1 H N N 422
TYR HE2 H N N 423
TYR HH H N N 424
TYR HXT H N N 425
VAL N N N N 426
VAL CA C N S 427
VAL C C N N 428
VAL O O N N 429
VAL CB C N N 430
VAL CG1 C N N 431
VAL CG2 C N N 432
VAL OXT O N N 433
VAL H H N N 434
VAL H2 H N N 435
VAL HA H N N 436
VAL HB H N N 437
VAL HG11 H N N 438
VAL HG12 H N N 439
VAL HG13 H N N 440
VAL HG21 H N N 441
VAL HG22 H N N 442
VAL HG23 H N N 443
VAL HXT H N N 444
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
CYS N CA sing N N 70
CYS N H sing N N 71
CYS N H2 sing N N 72
CYS CA C sing N N 73
CYS CA CB sing N N 74
CYS CA HA sing N N 75
CYS C O doub N N 76
CYS C OXT sing N N 77
CYS CB SG sing N N 78
CYS CB HB2 sing N N 79
CYS CB HB3 sing N N 80
CYS SG HG sing N N 81
CYS OXT HXT sing N N 82
GLN N CA sing N N 83
GLN N H sing N N 84
GLN N H2 sing N N 85
GLN CA C sing N N 86
GLN CA CB sing N N 87
GLN CA HA sing N N 88
GLN C O doub N N 89
GLN C OXT sing N N 90
GLN CB CG sing N N 91
GLN CB HB2 sing N N 92
GLN CB HB3 sing N N 93
GLN CG CD sing N N 94
GLN CG HG2 sing N N 95
GLN CG HG3 sing N N 96
GLN CD OE1 doub N N 97
GLN CD NE2 sing N N 98
GLN NE2 HE21 sing N N 99
GLN NE2 HE22 sing N N 100
GLN OXT HXT sing N N 101
GLU N CA sing N N 102
GLU N H sing N N 103
GLU N H2 sing N N 104
GLU CA C sing N N 105
GLU CA CB sing N N 106
GLU CA HA sing N N 107
GLU C O doub N N 108
GLU C OXT sing N N 109
GLU CB CG sing N N 110
GLU CB HB2 sing N N 111
GLU CB HB3 sing N N 112
GLU CG CD sing N N 113
GLU CG HG2 sing N N 114
GLU CG HG3 sing N N 115
GLU CD OE1 doub N N 116
GLU CD OE2 sing N N 117
GLU OE2 HE2 sing N N 118
GLU OXT HXT sing N N 119
GLY N CA sing N N 120
GLY N H sing N N 121
GLY N H2 sing N N 122
GLY CA C sing N N 123
GLY CA HA2 sing N N 124
GLY CA HA3 sing N N 125
GLY C O doub N N 126
GLY C OXT sing N N 127
GLY OXT HXT sing N N 128
HIS N CA sing N N 129
HIS N H sing N N 130
HIS N H2 sing N N 131
HIS CA C sing N N 132
HIS CA CB sing N N 133
HIS CA HA sing N N 134
HIS C O doub N N 135
HIS C OXT sing N N 136
HIS CB CG sing N N 137
HIS CB HB2 sing N N 138
HIS CB HB3 sing N N 139
HIS CG ND1 sing Y N 140
HIS CG CD2 doub Y N 141
HIS ND1 CE1 doub Y N 142
HIS ND1 HD1 sing N N 143
HIS CD2 NE2 sing Y N 144
HIS CD2 HD2 sing N N 145
HIS CE1 NE2 sing Y N 146
HIS CE1 HE1 sing N N 147
HIS NE2 HE2 sing N N 148
HIS OXT HXT sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
ILE N CA sing N N 152
ILE N H sing N N 153
ILE N H2 sing N N 154
ILE CA C sing N N 155
ILE CA CB sing N N 156
ILE CA HA sing N N 157
ILE C O doub N N 158
ILE C OXT sing N N 159
ILE CB CG1 sing N N 160
ILE CB CG2 sing N N 161
ILE CB HB sing N N 162
ILE CG1 CD1 sing N N 163
ILE CG1 HG12 sing N N 164
ILE CG1 HG13 sing N N 165
ILE CG2 HG21 sing N N 166
ILE CG2 HG22 sing N N 167
ILE CG2 HG23 sing N N 168
ILE CD1 HD11 sing N N 169
ILE CD1 HD12 sing N N 170
ILE CD1 HD13 sing N N 171
ILE OXT HXT sing N N 172
LEU N CA sing N N 173
LEU N H sing N N 174
LEU N H2 sing N N 175
LEU CA C sing N N 176
LEU CA CB sing N N 177
LEU CA HA sing N N 178
LEU C O doub N N 179
LEU C OXT sing N N 180
LEU CB CG sing N N 181
LEU CB HB2 sing N N 182
LEU CB HB3 sing N N 183
LEU CG CD1 sing N N 184
LEU CG CD2 sing N N 185
LEU CG HG sing N N 186
LEU CD1 HD11 sing N N 187
LEU CD1 HD12 sing N N 188
LEU CD1 HD13 sing N N 189
LEU CD2 HD21 sing N N 190
LEU CD2 HD22 sing N N 191
LEU CD2 HD23 sing N N 192
LEU OXT HXT sing N N 193
LYS N CA sing N N 194
LYS N H sing N N 195
LYS N H2 sing N N 196
LYS CA C sing N N 197
LYS CA CB sing N N 198
LYS CA HA sing N N 199
LYS C O doub N N 200
LYS C OXT sing N N 201
LYS CB CG sing N N 202
LYS CB HB2 sing N N 203
LYS CB HB3 sing N N 204
LYS CG CD sing N N 205
LYS CG HG2 sing N N 206
LYS CG HG3 sing N N 207
LYS CD CE sing N N 208
LYS CD HD2 sing N N 209
LYS CD HD3 sing N N 210
LYS CE NZ sing N N 211
LYS CE HE2 sing N N 212
LYS CE HE3 sing N N 213
LYS NZ HZ1 sing N N 214
LYS NZ HZ2 sing N N 215
LYS NZ HZ3 sing N N 216
LYS OXT HXT sing N N 217
MAN C1 C2 sing N N 218
MAN C1 O1 sing N N 219
MAN C1 O5 sing N N 220
MAN C1 H1 sing N N 221
MAN C2 C3 sing N N 222
MAN C2 O2 sing N N 223
MAN C2 H2 sing N N 224
MAN C3 C4 sing N N 225
MAN C3 O3 sing N N 226
MAN C3 H3 sing N N 227
MAN C4 C5 sing N N 228
MAN C4 O4 sing N N 229
MAN C4 H4 sing N N 230
MAN C5 C6 sing N N 231
MAN C5 O5 sing N N 232
MAN C5 H5 sing N N 233
MAN C6 O6 sing N N 234
MAN C6 H61 sing N N 235
MAN C6 H62 sing N N 236
MAN O1 HO1 sing N N 237
MAN O2 HO2 sing N N 238
MAN O3 HO3 sing N N 239
MAN O4 HO4 sing N N 240
MAN O6 HO6 sing N N 241
MET N CA sing N N 242
MET N H sing N N 243
MET N H2 sing N N 244
MET CA C sing N N 245
MET CA CB sing N N 246
MET CA HA sing N N 247
MET C O doub N N 248
MET C OXT sing N N 249
MET CB CG sing N N 250
MET CB HB2 sing N N 251
MET CB HB3 sing N N 252
MET CG SD sing N N 253
MET CG HG2 sing N N 254
MET CG HG3 sing N N 255
MET SD CE sing N N 256
MET CE HE1 sing N N 257
MET CE HE2 sing N N 258
MET CE HE3 sing N N 259
MET OXT HXT sing N N 260
NAG C1 C2 sing N N 261
NAG C1 O1 sing N N 262
NAG C1 O5 sing N N 263
NAG C1 H1 sing N N 264
NAG C2 C3 sing N N 265
NAG C2 N2 sing N N 266
NAG C2 H2 sing N N 267
NAG C3 C4 sing N N 268
NAG C3 O3 sing N N 269
NAG C3 H3 sing N N 270
NAG C4 C5 sing N N 271
NAG C4 O4 sing N N 272
NAG C4 H4 sing N N 273
NAG C5 C6 sing N N 274
NAG C5 O5 sing N N 275
NAG C5 H5 sing N N 276
NAG C6 O6 sing N N 277
NAG C6 H61 sing N N 278
NAG C6 H62 sing N N 279
NAG C7 C8 sing N N 280
NAG C7 N2 sing N N 281
NAG C7 O7 doub N N 282
NAG C8 H81 sing N N 283
NAG C8 H82 sing N N 284
NAG C8 H83 sing N N 285
NAG N2 HN2 sing N N 286
NAG O1 HO1 sing N N 287
NAG O3 HO3 sing N N 288
NAG O4 HO4 sing N N 289
NAG O6 HO6 sing N N 290
PHE N CA sing N N 291
PHE N H sing N N 292
PHE N H2 sing N N 293
PHE CA C sing N N 294
PHE CA CB sing N N 295
PHE CA HA sing N N 296
PHE C O doub N N 297
PHE C OXT sing N N 298
PHE CB CG sing N N 299
PHE CB HB2 sing N N 300
PHE CB HB3 sing N N 301
PHE CG CD1 doub Y N 302
PHE CG CD2 sing Y N 303
PHE CD1 CE1 sing Y N 304
PHE CD1 HD1 sing N N 305
PHE CD2 CE2 doub Y N 306
PHE CD2 HD2 sing N N 307
PHE CE1 CZ doub Y N 308
PHE CE1 HE1 sing N N 309
PHE CE2 CZ sing Y N 310
PHE CE2 HE2 sing N N 311
PHE CZ HZ sing N N 312
PHE OXT HXT sing N N 313
PRO N CA sing N N 314
PRO N CD sing N N 315
PRO N H sing N N 316
PRO CA C sing N N 317
PRO CA CB sing N N 318
PRO CA HA sing N N 319
PRO C O doub N N 320
PRO C OXT sing N N 321
PRO CB CG sing N N 322
PRO CB HB2 sing N N 323
PRO CB HB3 sing N N 324
PRO CG CD sing N N 325
PRO CG HG2 sing N N 326
PRO CG HG3 sing N N 327
PRO CD HD2 sing N N 328
PRO CD HD3 sing N N 329
PRO OXT HXT sing N N 330
SER N CA sing N N 331
SER N H sing N N 332
SER N H2 sing N N 333
SER CA C sing N N 334
SER CA CB sing N N 335
SER CA HA sing N N 336
SER C O doub N N 337
SER C OXT sing N N 338
SER CB OG sing N N 339
SER CB HB2 sing N N 340
SER CB HB3 sing N N 341
SER OG HG sing N N 342
SER OXT HXT sing N N 343
THR N CA sing N N 344
THR N H sing N N 345
THR N H2 sing N N 346
THR CA C sing N N 347
THR CA CB sing N N 348
THR CA HA sing N N 349
THR C O doub N N 350
THR C OXT sing N N 351
THR CB OG1 sing N N 352
THR CB CG2 sing N N 353
THR CB HB sing N N 354
THR OG1 HG1 sing N N 355
THR CG2 HG21 sing N N 356
THR CG2 HG22 sing N N 357
THR CG2 HG23 sing N N 358
THR OXT HXT sing N N 359
TRP N CA sing N N 360
TRP N H sing N N 361
TRP N H2 sing N N 362
TRP CA C sing N N 363
TRP CA CB sing N N 364
TRP CA HA sing N N 365
TRP C O doub N N 366
TRP C OXT sing N N 367
TRP CB CG sing N N 368
TRP CB HB2 sing N N 369
TRP CB HB3 sing N N 370
TRP CG CD1 doub Y N 371
TRP CG CD2 sing Y N 372
TRP CD1 NE1 sing Y N 373
TRP CD1 HD1 sing N N 374
TRP CD2 CE2 doub Y N 375
TRP CD2 CE3 sing Y N 376
TRP NE1 CE2 sing Y N 377
TRP NE1 HE1 sing N N 378
TRP CE2 CZ2 sing Y N 379
TRP CE3 CZ3 doub Y N 380
TRP CE3 HE3 sing N N 381
TRP CZ2 CH2 doub Y N 382
TRP CZ2 HZ2 sing N N 383
TRP CZ3 CH2 sing Y N 384
TRP CZ3 HZ3 sing N N 385
TRP CH2 HH2 sing N N 386
TRP OXT HXT sing N N 387
TYR N CA sing N N 388
TYR N H sing N N 389
TYR N H2 sing N N 390
TYR CA C sing N N 391
TYR CA CB sing N N 392
TYR CA HA sing N N 393
TYR C O doub N N 394
TYR C OXT sing N N 395
TYR CB CG sing N N 396
TYR CB HB2 sing N N 397
TYR CB HB3 sing N N 398
TYR CG CD1 doub Y N 399
TYR CG CD2 sing Y N 400
TYR CD1 CE1 sing Y N 401
TYR CD1 HD1 sing N N 402
TYR CD2 CE2 doub Y N 403
TYR CD2 HD2 sing N N 404
TYR CE1 CZ doub Y N 405
TYR CE1 HE1 sing N N 406
TYR CE2 CZ sing Y N 407
TYR CE2 HE2 sing N N 408
TYR CZ OH sing N N 409
TYR OH HH sing N N 410
TYR OXT HXT sing N N 411
VAL N CA sing N N 412
VAL N H sing N N 413
VAL N H2 sing N N 414
VAL CA C sing N N 415
VAL CA CB sing N N 416
VAL CA HA sing N N 417
VAL C O doub N N 418
VAL C OXT sing N N 419
VAL CB CG1 sing N N 420
VAL CB CG2 sing N N 421
VAL CB HB sing N N 422
VAL CG1 HG11 sing N N 423
VAL CG1 HG12 sing N N 424
VAL CG1 HG13 sing N N 425
VAL CG2 HG21 sing N N 426
VAL CG2 HG22 sing N N 427
VAL CG2 HG23 sing N N 428
VAL OXT HXT sing N N 429
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 NAG 1 n
2 NAG 2 n
2 MAN 3 n
3 NAG 1 n
3 NAG 2 n
#
_atom_sites.entry_id 1QUB
_atom_sites.fract_transf_matrix[1][1] 0.006205
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.006006
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.008733
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_