HEADER ONCOPROTEIN 11-SEP-03 1QYM TITLE X-RAY STRUCTURE OF HUMAN GANKYRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 10; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 26S PROTEASOME REGULATORY SUBUNIT P28, GANKYRIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PSMD10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SCS1; SOURCE 9 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PQTEV; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PSFEP250A062 KEYWDS ANKYRIN REPEAT, STRUCTURAL GENOMICS, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.A.MANJASETTY,C.QUEDENAU,V.SIEVERT,K.BUESSOW,F.NIESEN,H.DELBRUECK, AUTHOR 2 U.HEINEMANN REVDAT 5 23-AUG-23 1QYM 1 SEQADV REVDAT 4 13-JUL-11 1QYM 1 VERSN REVDAT 3 24-FEB-09 1QYM 1 VERSN REVDAT 2 23-MAR-04 1QYM 1 JRNL REVDAT 1 18-NOV-03 1QYM 0 JRNL AUTH B.A.MANJASETTY,C.QUEDENAU,V.SIEVERT,K.BUESSOW,F.NIESEN, JRNL AUTH 2 H.DELBRUECK,U.HEINEMANN JRNL TITL X-RAY STRUCTURE OF HUMAN GANKYRIN, THE PRODUCT OF A GENE JRNL TITL 2 LINKED TO HEPATOCELLULAR CARCINOMA. JRNL REF PROTEINS V. 55 214 2004 JRNL REFN ISSN 0887-3585 JRNL PMID 14997555 JRNL DOI 10.1002/PROT.20028 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 12144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 632 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 795 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1680 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.74000 REMARK 3 B22 (A**2) : -1.74000 REMARK 3 B33 (A**2) : 3.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.310 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.253 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.540 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1705 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1554 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2308 ; 1.281 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3629 ; 1.037 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 222 ; 5.897 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 267 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1916 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 301 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 415 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1834 ; 0.243 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1031 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 42 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 18 ; 0.290 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.230 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1103 ; 0.375 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1752 ; 0.729 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 602 ; 1.224 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 556 ; 2.205 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): 51.1800 53.1650 18.9770 REMARK 3 T TENSOR REMARK 3 T11: 0.5169 T22: 0.7380 REMARK 3 T33: 0.2136 T12: 0.2600 REMARK 3 T13: 0.2252 T23: 0.0787 REMARK 3 L TENSOR REMARK 3 L11: 8.3737 L22: 10.3483 REMARK 3 L33: 12.5146 L12: -0.8674 REMARK 3 L13: 1.5481 L23: 0.9792 REMARK 3 S TENSOR REMARK 3 S11: 0.3874 S12: 1.1432 S13: 0.2328 REMARK 3 S21: -1.3036 S22: 0.3792 S23: -1.5018 REMARK 3 S31: 0.1550 S32: 1.8690 S33: -0.7667 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): 43.5980 50.2440 24.9090 REMARK 3 T TENSOR REMARK 3 T11: 0.6692 T22: 0.5250 REMARK 3 T33: 0.2998 T12: 0.2594 REMARK 3 T13: -0.0780 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 10.0123 L22: 8.5869 REMARK 3 L33: 10.8910 L12: -4.1997 REMARK 3 L13: -2.1517 L23: 1.9954 REMARK 3 S TENSOR REMARK 3 S11: 0.4889 S12: 1.1256 S13: 0.1512 REMARK 3 S21: -1.0495 S22: -0.2865 S23: -0.3443 REMARK 3 S31: 0.3460 S32: 0.4538 S33: -0.2024 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): 36.5450 51.1550 31.6500 REMARK 3 T TENSOR REMARK 3 T11: 0.6349 T22: 0.3387 REMARK 3 T33: 0.3517 T12: 0.2093 REMARK 3 T13: -0.1661 T23: -0.0436 REMARK 3 L TENSOR REMARK 3 L11: 10.9095 L22: 5.3065 REMARK 3 L33: 11.4629 L12: -1.8271 REMARK 3 L13: -1.4069 L23: 3.1964 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: 0.0796 S13: -0.0290 REMARK 3 S21: -0.2945 S22: -0.1297 S23: -0.0761 REMARK 3 S31: 0.5746 S32: -0.1397 S33: 0.1006 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): 29.6690 54.2110 38.0050 REMARK 3 T TENSOR REMARK 3 T11: 0.5350 T22: 0.3432 REMARK 3 T33: 0.4385 T12: 0.1611 REMARK 3 T13: -0.1596 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 9.3388 L22: 4.1317 REMARK 3 L33: 10.2952 L12: -3.5612 REMARK 3 L13: -3.1893 L23: 1.4392 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: -0.1969 S13: -0.0159 REMARK 3 S21: -0.1647 S22: 0.0159 S23: 0.3566 REMARK 3 S31: 0.2387 S32: -0.1135 S33: 0.0027 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): 23.5800 58.0600 44.0260 REMARK 3 T TENSOR REMARK 3 T11: 0.4244 T22: 0.4342 REMARK 3 T33: 0.4953 T12: 0.0357 REMARK 3 T13: -0.0261 T23: -0.0689 REMARK 3 L TENSOR REMARK 3 L11: 7.2145 L22: 7.2833 REMARK 3 L33: 11.2555 L12: -2.1814 REMARK 3 L13: 1.5757 L23: 4.3176 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: -0.0695 S13: 0.0470 REMARK 3 S21: 0.2195 S22: 0.0809 S23: 0.4663 REMARK 3 S31: 0.0956 S32: 0.0810 S33: -0.0640 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0480 64.9610 50.3020 REMARK 3 T TENSOR REMARK 3 T11: 0.3333 T22: 0.3658 REMARK 3 T33: 0.5281 T12: 0.0493 REMARK 3 T13: 0.0350 T23: -0.1262 REMARK 3 L TENSOR REMARK 3 L11: 7.7416 L22: 5.4267 REMARK 3 L33: 14.8177 L12: -2.6589 REMARK 3 L13: -2.1663 L23: 3.7163 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: -0.4619 S13: 0.4079 REMARK 3 S21: 0.2609 S22: 0.1433 S23: 0.5893 REMARK 3 S31: -0.0348 S32: 0.3261 S33: -0.1151 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 226 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6110 69.7460 54.7370 REMARK 3 T TENSOR REMARK 3 T11: 0.4592 T22: 0.3435 REMARK 3 T33: 0.6708 T12: 0.0052 REMARK 3 T13: 0.1268 T23: -0.1587 REMARK 3 L TENSOR REMARK 3 L11: 7.2799 L22: 4.2038 REMARK 3 L33: 7.6256 L12: -1.0086 REMARK 3 L13: -5.9915 L23: 5.6391 REMARK 3 S TENSOR REMARK 3 S11: 0.2866 S12: -0.7073 S13: 0.9852 REMARK 3 S21: 0.4898 S22: -0.0329 S23: 0.1715 REMARK 3 S31: -0.1721 S32: 0.0341 S33: -0.2537 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 TLS RESTRAINED REFINEMENT REMARK 4 REMARK 4 1QYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000020228. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI111-DCM REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12978 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 35.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : 0.62000 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: SWISS-MODEL (PDB ENTRIES 1N1I, 1N0R, 1MJ0, 1N0Q) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M NA FORMATE , PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.19950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.18650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.18650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.59975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.18650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.18650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.79925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.18650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.18650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.59975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.18650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.18650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.79925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.19950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 246 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 LYS A 213 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 136 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 181 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 37 -156.71 -92.35 REMARK 500 ASN A 151 79.12 -110.90 REMARK 500 LYS A 162 36.63 76.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 1QYM A 2 226 UNP O75832 PSD10_HUMAN 2 226 SEQADV 1QYM GLY A 0 UNP O75832 CLONING ARTIFACT SEQADV 1QYM SER A 1 UNP O75832 CLONING ARTIFACT SEQRES 1 A 227 GLY SER GLU GLY CYS VAL SER ASN LEU MET VAL CYS ASN SEQRES 2 A 227 LEU ALA TYR SER GLY LYS LEU GLU GLU LEU LYS GLU SER SEQRES 3 A 227 ILE LEU ALA ASP LYS SER LEU ALA THR ARG THR ASP GLN SEQRES 4 A 227 ASP SER ARG THR ALA LEU HIS TRP ALA CYS SER ALA GLY SEQRES 5 A 227 HIS THR GLU ILE VAL GLU PHE LEU LEU GLN LEU GLY VAL SEQRES 6 A 227 PRO VAL ASN ASP LYS ASP ASP ALA GLY TRP SER PRO LEU SEQRES 7 A 227 HIS ILE ALA ALA SER ALA GLY ARG ASP GLU ILE VAL LYS SEQRES 8 A 227 ALA LEU LEU GLY LYS GLY ALA GLN VAL ASN ALA VAL ASN SEQRES 9 A 227 GLN ASN GLY CYS THR PRO LEU HIS TYR ALA ALA SER LYS SEQRES 10 A 227 ASN ARG HIS GLU ILE ALA VAL MET LEU LEU GLU GLY GLY SEQRES 11 A 227 ALA ASN PRO ASP ALA LYS ASP HIS TYR GLU ALA THR ALA SEQRES 12 A 227 MET HIS ARG ALA ALA ALA LYS GLY ASN LEU LYS MET ILE SEQRES 13 A 227 HIS ILE LEU LEU TYR TYR LYS ALA SER THR ASN ILE GLN SEQRES 14 A 227 ASP THR GLU GLY ASN THR PRO LEU HIS LEU ALA CYS ASP SEQRES 15 A 227 GLU GLU ARG VAL GLU GLU ALA LYS LEU LEU VAL SER GLN SEQRES 16 A 227 GLY ALA SER ILE TYR ILE GLU ASN LYS GLU GLU LYS THR SEQRES 17 A 227 PRO LEU GLN VAL ALA LYS GLY GLY LEU GLY LEU ILE LEU SEQRES 18 A 227 LYS ARG MET VAL GLU GLY FORMUL 2 HOH *53(H2 O) HELIX 1 1 LEU A 8 GLY A 17 1 10 HELIX 2 2 LYS A 18 ASP A 29 1 12 HELIX 3 3 LYS A 30 THR A 34 5 5 HELIX 4 4 THR A 42 GLY A 51 1 10 HELIX 5 5 HIS A 52 GLY A 63 1 12 HELIX 6 6 SER A 75 GLY A 84 1 10 HELIX 7 7 ARG A 85 LYS A 95 1 11 HELIX 8 8 THR A 108 LYS A 116 1 9 HELIX 9 9 ARG A 118 GLY A 128 1 11 HELIX 10 10 THR A 141 GLY A 150 1 10 HELIX 11 11 ASN A 151 TYR A 161 1 11 HELIX 12 12 THR A 174 GLU A 182 1 9 HELIX 13 13 ARG A 184 GLN A 194 1 11 HELIX 14 14 THR A 207 ALA A 212 1 6 HELIX 15 15 GLY A 215 GLY A 226 1 12 CRYST1 116.373 116.373 74.399 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008593 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013441 0.00000