HEADER HYDROLASE 18-SEP-03 1QZY TITLE HUMAN METHIONINE AMINOPEPTIDASE IN COMPLEX WITH BENGAMIDE TITLE 2 INHIBITOR LAF153 AND COBALT COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METAP 2, PEPTIDASE M 2, INITIATION FACTOR 2 COMPND 5 ASSOCIATED 67 KDA GLYCOPROTEIN, P67, P67EIF2; COMPND 6 EC: 3.4.11.18 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.ECK,H.K.SONG,A.MOROLLO REVDAT 3 24-FEB-09 1QZY 1 VERSN REVDAT 2 18-JAN-05 1QZY 1 JRNL REVDAT 1 25-NOV-03 1QZY 0 JRNL AUTH H.TOWBIN,K.W.BAIR,J.A.DECAPRIO,M.J.ECK,S.KIM, JRNL AUTH 2 F.R.KINDER,A.MOROLLO,D.R.MUELLER,P.SCHINDLER, JRNL AUTH 3 H.K.SONG,J.VAN OOSTRUM,R.W.VERSACE,H.VOSHOL,J.WOOD, JRNL AUTH 4 S.ZABLUDOFF,P.E.PHILLIPS JRNL TITL PROTEOMICS-BASED TARGET IDENTIFICATION: BENGAMIDES JRNL TITL 2 AS A NEW CLASS OF METHIONINE AMINOPEPTIDASE JRNL TITL 3 INHIBITORS. JRNL REF J.BIOL.CHEM. V. 278 52964 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 14534293 JRNL DOI 10.1074/JBC.M309039200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 722276.210 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.4 REMARK 3 NUMBER OF REFLECTIONS : 54566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2764 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7271 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 394 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2786 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.38000 REMARK 3 B22 (A**2) : -1.80000 REMARK 3 B33 (A**2) : -1.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.86 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.020 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.510 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.880 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.750 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 46.05 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : TBU.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : INH.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : TBU.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : INH.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QZY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-03. REMARK 100 THE RCSB ID CODE IS RCSB020275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.69150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.69150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.30500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.52000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.30500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.52000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.69150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.30500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.52000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.69150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.30500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.52000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 VAL A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 HIS A 13 REMARK 465 LEU A 14 REMARK 465 ASN A 15 REMARK 465 GLY A 16 REMARK 465 ASP A 17 REMARK 465 LEU A 18 REMARK 465 ASP A 19 REMARK 465 PRO A 20 REMARK 465 ASP A 21 REMARK 465 ASP A 22 REMARK 465 ARG A 23 REMARK 465 GLU A 24 REMARK 465 GLU A 25 REMARK 465 GLY A 26 REMARK 465 ALA A 27 REMARK 465 ALA A 28 REMARK 465 SER A 29 REMARK 465 THR A 30 REMARK 465 ALA A 31 REMARK 465 GLU A 32 REMARK 465 GLU A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 LYS A 38 REMARK 465 ARG A 39 REMARK 465 ARG A 40 REMARK 465 LYS A 41 REMARK 465 LYS A 42 REMARK 465 LYS A 43 REMARK 465 LYS A 44 REMARK 465 SER A 45 REMARK 465 LYS A 46 REMARK 465 GLY A 47 REMARK 465 PRO A 48 REMARK 465 SER A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 51 REMARK 465 GLY A 52 REMARK 465 GLU A 53 REMARK 465 GLN A 54 REMARK 465 GLU A 55 REMARK 465 PRO A 56 REMARK 465 ASP A 57 REMARK 465 LYS A 58 REMARK 465 GLU A 59 REMARK 465 SER A 60 REMARK 465 GLY A 61 REMARK 465 ALA A 62 REMARK 465 SER A 63 REMARK 465 VAL A 64 REMARK 465 ASP A 65 REMARK 465 GLU A 66 REMARK 465 VAL A 67 REMARK 465 ALA A 68 REMARK 465 ARG A 69 REMARK 465 GLN A 70 REMARK 465 LEU A 71 REMARK 465 GLU A 72 REMARK 465 ARG A 73 REMARK 465 SER A 74 REMARK 465 ALA A 75 REMARK 465 LEU A 76 REMARK 465 GLU A 77 REMARK 465 ASP A 78 REMARK 465 LYS A 79 REMARK 465 GLU A 80 REMARK 465 ARG A 81 REMARK 465 ASP A 82 REMARK 465 GLU A 83 REMARK 465 ASP A 84 REMARK 465 ASP A 85 REMARK 465 GLU A 86 REMARK 465 ASP A 87 REMARK 465 GLY A 88 REMARK 465 ASP A 89 REMARK 465 GLY A 90 REMARK 465 ASP A 91 REMARK 465 GLY A 92 REMARK 465 ASP A 93 REMARK 465 GLY A 94 REMARK 465 ALA A 95 REMARK 465 THR A 96 REMARK 465 GLY A 97 REMARK 465 LYS A 98 REMARK 465 LYS A 99 REMARK 465 LYS A 100 REMARK 465 LYS A 101 REMARK 465 LYS A 102 REMARK 465 LYS A 103 REMARK 465 LYS A 104 REMARK 465 LYS A 105 REMARK 465 LYS A 106 REMARK 465 ARG A 107 REMARK 465 GLY A 108 REMARK 465 PRO A 109 REMARK 465 PRO A 139 REMARK 465 THR A 140 REMARK 465 GLN A 141 REMARK 465 ASP A 142 REMARK 465 GLY A 143 REMARK 465 ARG A 144 REMARK 465 THR A 145 REMARK 465 ALA A 146 REMARK 465 ALA A 147 REMARK 465 TRP A 148 REMARK 465 ARG A 149 REMARK 465 THR A 150 REMARK 465 THR A 151 REMARK 465 SER A 152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 296 NH2 ARG A 296 3555 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 114 -79.82 -41.33 REMARK 500 SER A 117 -12.77 -151.53 REMARK 500 ASN A 211 79.32 -150.05 REMARK 500 CYS A 223 37.68 -146.67 REMARK 500 ASN A 226 -110.04 52.52 REMARK 500 MET A 378 177.75 71.74 REMARK 500 CYS A 468 -180.00 -170.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 479 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 OD1 REMARK 620 2 ASP A 251 OD2 58.9 REMARK 620 3 ASP A 262 OD1 96.0 154.8 REMARK 620 4 GLU A 459 OE1 101.1 96.6 84.8 REMARK 620 5 TDE A 500 O23 145.8 91.0 113.8 98.1 REMARK 620 6 TDE A 500 O24 85.0 88.0 92.8 173.6 77.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 480 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 262 OD2 REMARK 620 2 HIS A 331 NE2 89.5 REMARK 620 3 GLU A 364 OE2 163.7 93.4 REMARK 620 4 GLU A 459 OE2 84.8 119.4 79.8 REMARK 620 5 TDE A 500 O23 99.4 148.4 86.5 91.8 REMARK 620 6 TDE A 500 O22 101.7 77.8 94.7 162.0 70.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 479 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 480 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDE A 500 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TBU A 690 DBREF 1QZY A 1 478 UNP P50579 AMPM2_HUMAN 1 478 SEQADV 1QZY ILE A 347 UNP P50579 VAL 347 CONFLICT SEQRES 1 A 478 MET ALA GLY VAL GLU GLU VAL ALA ALA SER GLY SER HIS SEQRES 2 A 478 LEU ASN GLY ASP LEU ASP PRO ASP ASP ARG GLU GLU GLY SEQRES 3 A 478 ALA ALA SER THR ALA GLU GLU ALA ALA LYS LYS LYS ARG SEQRES 4 A 478 ARG LYS LYS LYS LYS SER LYS GLY PRO SER ALA ALA GLY SEQRES 5 A 478 GLU GLN GLU PRO ASP LYS GLU SER GLY ALA SER VAL ASP SEQRES 6 A 478 GLU VAL ALA ARG GLN LEU GLU ARG SER ALA LEU GLU ASP SEQRES 7 A 478 LYS GLU ARG ASP GLU ASP ASP GLU ASP GLY ASP GLY ASP SEQRES 8 A 478 GLY ASP GLY ALA THR GLY LYS LYS LYS LYS LYS LYS LYS SEQRES 9 A 478 LYS LYS ARG GLY PRO LYS VAL GLN THR ASP PRO PRO SER SEQRES 10 A 478 VAL PRO ILE CYS ASP LEU TYR PRO ASN GLY VAL PHE PRO SEQRES 11 A 478 LYS GLY GLN GLU CYS GLU TYR PRO PRO THR GLN ASP GLY SEQRES 12 A 478 ARG THR ALA ALA TRP ARG THR THR SER GLU GLU LYS LYS SEQRES 13 A 478 ALA LEU ASP GLN ALA SER GLU GLU ILE TRP ASN ASP PHE SEQRES 14 A 478 ARG GLU ALA ALA GLU ALA HIS ARG GLN VAL ARG LYS TYR SEQRES 15 A 478 VAL MET SER TRP ILE LYS PRO GLY MET THR MET ILE GLU SEQRES 16 A 478 ILE CYS GLU LYS LEU GLU ASP CYS SER ARG LYS LEU ILE SEQRES 17 A 478 LYS GLU ASN GLY LEU ASN ALA GLY LEU ALA PHE PRO THR SEQRES 18 A 478 GLY CYS SER LEU ASN ASN CYS ALA ALA HIS TYR THR PRO SEQRES 19 A 478 ASN ALA GLY ASP THR THR VAL LEU GLN TYR ASP ASP ILE SEQRES 20 A 478 CYS LYS ILE ASP PHE GLY THR HIS ILE SER GLY ARG ILE SEQRES 21 A 478 ILE ASP CYS ALA PHE THR VAL THR PHE ASN PRO LYS TYR SEQRES 22 A 478 ASP THR LEU LEU LYS ALA VAL LYS ASP ALA THR ASN THR SEQRES 23 A 478 GLY ILE LYS CYS ALA GLY ILE ASP VAL ARG LEU CYS ASP SEQRES 24 A 478 VAL GLY GLU ALA ILE GLN GLU VAL MET GLU SER TYR GLU SEQRES 25 A 478 VAL GLU ILE ASP GLY LYS THR TYR GLN VAL LYS PRO ILE SEQRES 26 A 478 ARG ASN LEU ASN GLY HIS SER ILE GLY GLN TYR ARG ILE SEQRES 27 A 478 HIS ALA GLY LYS THR VAL PRO ILE ILE LYS GLY GLY GLU SEQRES 28 A 478 ALA THR ARG MET GLU GLU GLY GLU VAL TYR ALA ILE GLU SEQRES 29 A 478 THR PHE GLY SER THR GLY LYS GLY VAL VAL HIS ASP ASP SEQRES 30 A 478 MET GLU CYS SER HIS TYR MET LYS ASN PHE ASP VAL GLY SEQRES 31 A 478 HIS VAL PRO ILE ARG LEU PRO ARG THR LYS HIS LEU LEU SEQRES 32 A 478 ASN VAL ILE ASN GLU ASN PHE GLY THR LEU ALA PHE CYS SEQRES 33 A 478 ARG ARG TRP LEU ASP ARG LEU GLY GLU SER LYS TYR LEU SEQRES 34 A 478 MET ALA LEU LYS ASN LEU CYS ASP LEU GLY ILE VAL ASP SEQRES 35 A 478 PRO TYR PRO PRO LEU CYS ASP ILE LYS GLY SER TYR THR SEQRES 36 A 478 ALA GLN PHE GLU HIS THR ILE LEU LEU ARG PRO THR CYS SEQRES 37 A 478 LYS GLU VAL VAL SER ARG GLY ASP ASP TYR HET CO A 479 1 HET CO A 480 1 HET TDE A 500 27 HET TBU A 690 5 HETNAM CO COBALT (II) ION HETNAM TDE (E)-(2R,3R,4S,5R)-3,4,5-TRIHYDROXY-2-METHOXY-8,8- HETNAM 2 TDE DIMETHYL-NON-6-ENOIC ACID ((3S,6R)-6-HYDROXY-2-OXO- HETNAM 3 TDE AZEPAN-3-YL)-AMIDE HETNAM TBU TERTIARY-BUTYL ALCOHOL HETSYN TBU 2-METHYL-2-PROPANOL FORMUL 2 CO 2(CO 2+) FORMUL 4 TDE C18 H32 N2 O7 FORMUL 5 TBU C4 H10 O FORMUL 6 HOH *272(H2 O) HELIX 1 1 PRO A 119 TYR A 124 1 6 HELIX 2 2 GLU A 153 ALA A 161 1 9 HELIX 3 3 SER A 162 ILE A 187 1 26 HELIX 4 4 THR A 192 LYS A 209 1 18 HELIX 5 5 ASN A 211 LEU A 213 5 3 HELIX 6 6 ASN A 270 LYS A 272 5 3 HELIX 7 7 TYR A 273 ALA A 291 1 19 HELIX 8 8 ARG A 296 GLU A 309 1 14 HELIX 9 9 LEU A 396 PHE A 410 1 15 HELIX 10 10 ARG A 417 LEU A 423 1 7 HELIX 11 11 TYR A 428 LEU A 438 1 11 SHEET 1 A 5 GLN A 133 CYS A 135 0 SHEET 2 A 5 LYS A 469 VAL A 471 -1 O LYS A 469 N CYS A 135 SHEET 3 A 5 THR A 455 LEU A 464 -1 N LEU A 463 O GLU A 470 SHEET 4 A 5 VAL A 360 SER A 368 -1 N TYR A 361 O ILE A 462 SHEET 5 A 5 LYS A 323 PRO A 324 -1 N LYS A 323 O SER A 368 SHEET 1 B 6 GLN A 133 CYS A 135 0 SHEET 2 B 6 LYS A 469 VAL A 471 -1 O LYS A 469 N CYS A 135 SHEET 3 B 6 THR A 455 LEU A 464 -1 N LEU A 463 O GLU A 470 SHEET 4 B 6 VAL A 360 SER A 368 -1 N TYR A 361 O ILE A 462 SHEET 5 B 6 GLY A 330 ILE A 333 -1 N HIS A 331 O ALA A 362 SHEET 6 B 6 THR A 343 VAL A 344 -1 O VAL A 344 N GLY A 330 SHEET 1 C 3 ALA A 215 LEU A 225 0 SHEET 2 C 3 CYS A 248 ILE A 256 -1 O ASP A 251 N GLY A 222 SHEET 3 C 3 ARG A 259 VAL A 267 -1 O VAL A 267 N CYS A 248 SHEET 1 D 3 CYS A 228 ALA A 230 0 SHEET 2 D 3 LEU A 447 CYS A 448 -1 O LEU A 447 N ALA A 230 SHEET 3 D 3 HIS A 375 ASP A 376 -1 N HIS A 375 O CYS A 448 SHEET 1 E 2 GLU A 312 ILE A 315 0 SHEET 2 E 2 LYS A 318 GLN A 321 -1 O TYR A 320 N VAL A 313 SHEET 1 F 3 PHE A 415 CYS A 416 0 SHEET 2 F 3 HIS A 382 LYS A 385 -1 N TYR A 383 O PHE A 415 SHEET 3 F 3 VAL A 441 TYR A 444 -1 O TYR A 444 N HIS A 382 SSBOND 1 CYS A 228 CYS A 448 1555 1555 2.05 LINK CO CO A 479 OD1 ASP A 251 1555 1555 2.24 LINK CO CO A 479 OD2 ASP A 251 1555 1555 2.23 LINK CO CO A 479 OD1 ASP A 262 1555 1555 2.10 LINK CO CO A 479 OE1 GLU A 459 1555 1555 2.16 LINK CO CO A 479 O23 TDE A 500 1555 1555 2.23 LINK CO CO A 479 O24 TDE A 500 1555 1555 2.22 LINK CO CO A 480 OD2 ASP A 262 1555 1555 2.17 LINK CO CO A 480 NE2 HIS A 331 1555 1555 2.21 LINK CO CO A 480 OE2 GLU A 364 1555 1555 2.18 LINK CO CO A 480 OE2 GLU A 459 1555 1555 2.30 LINK CO CO A 480 O23 TDE A 500 1555 1555 2.30 LINK CO CO A 480 O22 TDE A 500 1555 1555 2.52 SITE 1 AC1 5 ASP A 251 ASP A 262 GLU A 459 CO A 480 SITE 2 AC1 5 TDE A 500 SITE 1 AC2 6 ASP A 262 HIS A 331 GLU A 364 GLU A 459 SITE 2 AC2 6 CO A 479 TDE A 500 SITE 1 AC3 18 PHE A 219 HIS A 231 ASP A 251 ASP A 262 SITE 2 AC3 18 LEU A 328 ASN A 329 HIS A 331 HIS A 339 SITE 3 AC3 18 THR A 343 GLU A 364 PHE A 366 ALA A 414 SITE 4 AC3 18 GLU A 459 CO A 479 CO A 480 HOH A 852 SITE 5 AC3 18 HOH A 865 HOH A 890 SITE 1 AC4 4 TYR A 383 ARG A 417 LYS A 433 HOH A 910 CRYST1 90.610 99.040 101.383 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011036 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010097 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009864 0.00000