data_1R2L # _entry.id 1R2L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1R2L pdb_00001r2l 10.2210/pdb1r2l/pdb RCSB RCSB020358 ? ? WWPDB D_1000020358 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-10-12 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1R2L _pdbx_database_status.recvd_initial_deposition_date 2003-09-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1JUU _pdbx_database_related.details 'NMR Structure Of A Parallel Stranded DNA Duplex At Atomic Resolution' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Venkitakrishnan, R.P.' 1 'Bhaumik, S.R.' 2 'Chary, K.V.R.' 3 'govil, G.' 4 'Liu, K.' 5 'Howard, F.B.' 6 'Miles, T.H.' 7 # _citation.id primary _citation.title 'A parallel stranded DNA duplex with an A-G mismatch base-pair: (CCATAATTTACC:CCTATGAAATCC)' _citation.journal_abbrev 'RECENT TRENDS IN BIOPHYS.RES.' _citation.journal_volume ? _citation.page_first 1 _citation.page_last 9 _citation.year 2004 _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed -1 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Venkitakrishnan, R.P.' 1 ? primary 'Bhaumik, S.R.' 2 ? primary 'Chary, K.V.R.' 3 ? primary 'govil, G.' 4 ? primary 'Liu, K.' 5 ? primary 'Howard, F.B.' 6 ? primary 'Miles, T.H.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*(DNR)P*(DNR)P*DAP*DTP*DAP*DAP*DTP*DTP*DTP*DAP*(DNR)P*(DNR))-3') ; 3585.400 1 ? ? ? ps-DNA 2 polymer syn "5'-D(P*CP*CP*TP*AP*TP*GP*AP*AP*AP*TP*CP*C)-3'" 3606.381 1 ? ? ? ps-DNA # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DNR)(DNR)(DA)(DT)(DA)(DA)(DT)(DT)(DT)(DA)(DNR)(DNR)' CCATAATTTACC A ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DA)(DT)(DG)(DA)(DA)(DA)(DT)(DC)(DC)' CCTATGAAATCC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DNR n 1 2 DNR n 1 3 DA n 1 4 DT n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DT n 1 10 DA n 1 11 DNR n 1 12 DNR n 2 1 DC n 2 2 DC n 2 3 DT n 2 4 DA n 2 5 DT n 2 6 DG n 2 7 DA n 2 8 DA n 2 9 DA n 2 10 DT n 2 11 DC n 2 12 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'the DNA duplex was synthesized with an applied biosystems model 380b DNA synthesizer using solid state phosphoramidate chemistry.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DNR 'DNA linking' n ;2'-DEOXY-N3-PROTONATED CYTIDINE-5'-MONOPHOSPHATE ; ? 'C9 H15 N3 O7 P 1' 308.205 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DNR 1 1 1 DNR DNR A . n A 1 2 DNR 2 2 2 DNR DNR A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DNR 11 11 11 DNR DNR A . n A 1 12 DNR 12 12 12 DNR DNR A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DT 3 3 3 DT DT B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DA 8 8 8 DA DA B . n B 2 9 DA 9 9 9 DA DA B . n B 2 10 DT 10 10 10 DT DT B . n B 2 11 DC 11 11 11 DC DC B . n B 2 12 DC 12 12 12 DC DC B . n # _cell.entry_id 1R2L _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R2L _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1R2L _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1R2L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1R2L _struct.title 'A parallel stranded DNA duplex with an A-G mismatch base-pair' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1R2L _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'ps-DNA, A:G mismatch, parallel DNA duplex, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 PDB 1R2L 1R2L ? ? ? 2 2 PDB 1R2L 1R2L ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1R2L A 1 ? 12 ? 1R2L 1 ? 12 ? 1 12 2 2 1R2L B 1 ? 12 ? 1R2L 1 ? 12 ? 1 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DNR 1 "O3'" ? ? ? 1_555 A DNR 2 P ? ? A DNR 1 A DNR 2 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale2 covale both ? A DNR 2 "O3'" ? ? ? 1_555 A DA 3 P ? ? A DNR 2 A DA 3 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale3 covale both ? A DA 10 "O3'" ? ? ? 1_555 A DNR 11 P ? ? A DA 10 A DNR 11 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale4 covale both ? A DNR 11 "O3'" ? ? ? 1_555 A DNR 12 P ? ? A DNR 11 A DNR 12 1_555 ? ? ? ? ? ? ? 1.624 ? ? hydrog1 hydrog ? ? A DNR 1 N4 ? ? ? 1_555 B DC 1 O2 ? ? A DNR 1 B DC 1 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog2 hydrog ? ? A DNR 1 O2 ? ? ? 1_555 B DC 1 N4 ? ? A DNR 1 B DC 1 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog3 hydrog ? ? A DNR 2 N4 ? ? ? 1_555 B DC 2 O2 ? ? A DNR 2 B DC 2 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog4 hydrog ? ? A DNR 2 O2 ? ? ? 1_555 B DC 2 N4 ? ? A DNR 2 B DC 2 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog5 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 3 B DT 3 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog6 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 3 O2 ? ? A DA 3 B DT 3 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog7 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 4 B DA 4 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog8 hydrog ? ? A DT 4 O2 ? ? ? 1_555 B DA 4 N6 ? ? A DT 4 B DA 4 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog9 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 5 B DT 5 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog10 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 5 O2 ? ? A DA 5 B DT 5 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog11 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DG 6 N1 ? ? A DA 6 B DG 6 1_555 ? ? ? ? ? ? 'DA-DG MISPAIR' ? ? ? hydrog12 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 7 B DA 7 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog13 hydrog ? ? A DT 7 O2 ? ? ? 1_555 B DA 7 N6 ? ? A DT 7 B DA 7 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog14 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 8 B DA 8 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog15 hydrog ? ? A DT 8 O2 ? ? ? 1_555 B DA 8 N6 ? ? A DT 8 B DA 8 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog16 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 9 B DA 9 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog17 hydrog ? ? A DT 9 O2 ? ? ? 1_555 B DA 9 N6 ? ? A DT 9 B DA 9 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog18 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DA 9 N6 ? ? A DA 10 B DA 9 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog19 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 10 B DT 10 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog20 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 10 O2 ? ? A DA 10 B DT 10 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog21 hydrog ? ? A DNR 12 N4 ? ? ? 1_555 B DC 12 O2 ? ? A DNR 12 B DC 12 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog22 hydrog ? ? A DNR 12 O2 ? ? ? 1_555 B DC 12 N4 ? ? A DNR 12 B DC 12 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.537 1.496 0.041 0.006 N 2 1 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.536 1.496 0.040 0.006 N 3 1 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.532 1.496 0.036 0.006 N 4 1 C5 B DT 10 ? ? C7 B DT 10 ? ? 1.535 1.496 0.039 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 112.76 117.00 -4.24 0.50 N 2 1 C5 A DA 3 ? ? C6 A DA 3 ? ? N1 A DA 3 ? ? 122.43 117.70 4.73 0.50 N 3 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 113.25 118.60 -5.35 0.60 N 4 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 103.77 108.00 -4.23 0.70 N 5 1 N1 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 128.36 123.10 5.26 0.80 N 6 1 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 115.05 122.30 -7.25 0.60 N 7 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 107.44 122.90 -15.46 0.60 N 8 1 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.64 117.00 -3.36 0.50 N 9 1 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.89 117.70 4.19 0.50 N 10 1 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 111.87 118.60 -6.73 0.60 N 11 1 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.26 117.00 -3.74 0.50 N 12 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 123.39 117.70 5.69 0.50 N 13 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 112.31 118.60 -6.29 0.60 N 14 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? "C2'" A DT 7 ? ? 100.87 105.90 -5.03 0.80 N 15 1 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 115.56 122.30 -6.74 0.60 N 16 1 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 123.47 119.00 4.47 0.60 N 17 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.78 122.90 -6.12 0.60 N 18 1 N3 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 116.98 122.30 -5.32 0.60 N 19 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.17 122.90 -4.73 0.60 N 20 1 N3 A DT 9 ? ? C2 A DT 9 ? ? O2 A DT 9 ? ? 117.26 122.30 -5.04 0.60 N 21 1 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 119.19 122.90 -3.71 0.60 N 22 1 C4 A DA 10 ? ? C5 A DA 10 ? ? C6 A DA 10 ? ? 112.47 117.00 -4.53 0.50 N 23 1 C5 A DA 10 ? ? C6 A DA 10 ? ? N1 A DA 10 ? ? 121.89 117.70 4.19 0.50 N 24 1 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 112.36 118.60 -6.24 0.60 N 25 1 N3 B DC 1 ? ? C2 B DC 1 ? ? O2 B DC 1 ? ? 116.96 121.90 -4.94 0.70 N 26 1 N3 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 117.57 121.90 -4.33 0.70 N 27 1 N3 B DT 3 ? ? C2 B DT 3 ? ? O2 B DT 3 ? ? 117.74 122.30 -4.56 0.60 N 28 1 C6 B DT 3 ? ? C5 B DT 3 ? ? C7 B DT 3 ? ? 119.15 122.90 -3.75 0.60 N 29 1 C4 B DA 4 ? ? C5 B DA 4 ? ? C6 B DA 4 ? ? 113.44 117.00 -3.56 0.50 N 30 1 C5 B DA 4 ? ? C6 B DA 4 ? ? N1 B DA 4 ? ? 121.57 117.70 3.87 0.50 N 31 1 N1 B DA 4 ? ? C6 B DA 4 ? ? N6 B DA 4 ? ? 110.92 118.60 -7.68 0.60 N 32 1 N3 B DT 5 ? ? C2 B DT 5 ? ? O2 B DT 5 ? ? 116.62 122.30 -5.68 0.60 N 33 1 C4 B DT 5 ? ? C5 B DT 5 ? ? C7 B DT 5 ? ? 125.16 119.00 6.16 0.60 N 34 1 C6 B DT 5 ? ? C5 B DT 5 ? ? C7 B DT 5 ? ? 113.65 122.90 -9.25 0.60 N 35 1 C5 B DG 6 ? ? C6 B DG 6 ? ? N1 B DG 6 ? ? 114.60 111.50 3.10 0.50 N 36 1 N3 B DG 6 ? ? C2 B DG 6 ? ? N2 B DG 6 ? ? 114.75 119.90 -5.15 0.70 N 37 1 N1 B DG 6 ? ? C6 B DG 6 ? ? O6 B DG 6 ? ? 116.17 119.90 -3.73 0.60 N 38 1 C4 B DA 7 ? ? C5 B DA 7 ? ? C6 B DA 7 ? ? 113.74 117.00 -3.26 0.50 N 39 1 C5 B DA 7 ? ? C6 B DA 7 ? ? N1 B DA 7 ? ? 121.97 117.70 4.27 0.50 N 40 1 N1 B DA 7 ? ? C6 B DA 7 ? ? N6 B DA 7 ? ? 111.26 118.60 -7.34 0.60 N 41 1 C4 B DA 8 ? ? C5 B DA 8 ? ? C6 B DA 8 ? ? 113.40 117.00 -3.60 0.50 N 42 1 C5 B DA 8 ? ? C6 B DA 8 ? ? N1 B DA 8 ? ? 122.13 117.70 4.43 0.50 N 43 1 N1 B DA 8 ? ? C6 B DA 8 ? ? N6 B DA 8 ? ? 112.72 118.60 -5.88 0.60 N 44 1 C4 B DA 9 ? ? C5 B DA 9 ? ? C6 B DA 9 ? ? 113.20 117.00 -3.80 0.50 N 45 1 C5 B DA 9 ? ? C6 B DA 9 ? ? N1 B DA 9 ? ? 122.52 117.70 4.82 0.50 N 46 1 N1 B DA 9 ? ? C6 B DA 9 ? ? N6 B DA 9 ? ? 113.53 118.60 -5.07 0.60 N 47 1 N3 B DT 10 ? ? C2 B DT 10 ? ? O2 B DT 10 ? ? 118.18 122.30 -4.12 0.60 N 48 1 N3 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 117.48 121.90 -4.42 0.70 N 49 1 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 117.62 121.90 -4.28 0.70 N 50 1 N3 B DC 12 ? ? C4 B DC 12 ? ? N4 B DC 12 ? ? 112.66 118.00 -5.34 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 3 ? ? 0.217 'SIDE CHAIN' 2 1 DT A 4 ? ? 0.112 'SIDE CHAIN' 3 1 DA A 5 ? ? 0.089 'SIDE CHAIN' 4 1 DA A 6 ? ? 0.111 'SIDE CHAIN' 5 1 DT A 7 ? ? 0.090 'SIDE CHAIN' 6 1 DC B 1 ? ? 0.100 'SIDE CHAIN' 7 1 DC B 2 ? ? 0.093 'SIDE CHAIN' 8 1 DT B 3 ? ? 0.097 'SIDE CHAIN' 9 1 DA B 4 ? ? 0.152 'SIDE CHAIN' 10 1 DT B 5 ? ? 0.080 'SIDE CHAIN' 11 1 DA B 7 ? ? 0.063 'SIDE CHAIN' 12 1 DA B 8 ? ? 0.129 'SIDE CHAIN' 13 1 DC B 11 ? ? 0.082 'SIDE CHAIN' 14 1 DC B 12 ? ? 0.072 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A DNR 1 A DNR 1 ? DC ? 2 A DNR 2 A DNR 2 ? DC ? 3 A DNR 11 A DNR 11 ? DC ? 4 A DNR 12 A DNR 12 ? DC ? # _pdbx_nmr_ensemble.entry_id 1R2L _pdbx_nmr_ensemble.conformers_calculated_total_number 1 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'energy minimized using the NMR constraints' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1R2L _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '5 mM concentration of each strand to form the duplex' _pdbx_nmr_sample_details.solvent_system '0.05 M deuterated sodium acetate buffer and 0.1 M NaCl pH 5.5 and 6.8' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 1 6.8 '0.1 M NaCl, 100% D2O' atm K 2 278 1 5.5 '0.1 M NaCl, 10% D2O, 90% H2O' atm K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 2 1 '2D TOCSY' 3 3 2 'jump return NOESY' 4 4 1 E-COSY # _pdbx_nmr_details.entry_id 1R2L _pdbx_nmr_details.text 'This structure was determined using 2D homonuclear techniques' # _pdbx_nmr_refine.entry_id 1R2L _pdbx_nmr_refine.method 'From the structure 1JUU, the required T base was replaced by G using insightII.' _pdbx_nmr_refine.details 'THE RESULTING STRUCTURE WAS ENERGY MINIMIZED USING THE NMR CONSTRAINTS' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal Discover 3.1 refinement MSI 1 Insight II 'structure solution' ? 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DNR P P N N 108 DNR OP1 O N N 109 DNR OP2 O N N 110 DNR "O5'" O N N 111 DNR "C5'" C N N 112 DNR "C4'" C N R 113 DNR "O4'" O N N 114 DNR "C1'" C N R 115 DNR N1 N N N 116 DNR C6 C N N 117 DNR C2 C N N 118 DNR O2 O N N 119 DNR N3 N N N 120 DNR C4 C N N 121 DNR N4 N N N 122 DNR C5 C N N 123 DNR "C2'" C N N 124 DNR "C3'" C N S 125 DNR "O3'" O N N 126 DNR OP3 O N N 127 DNR HOP2 H N N 128 DNR "H5'" H N N 129 DNR "H5''" H N N 130 DNR "H4'" H N N 131 DNR "H1'" H N N 132 DNR H6 H N N 133 DNR HN3 H N N 134 DNR H41 H N N 135 DNR H42 H N N 136 DNR H5 H N N 137 DNR "H2'" H N N 138 DNR "H2''" H N N 139 DNR "H3'" H N N 140 DNR "HO3'" H N N 141 DNR HOP3 H N N 142 DT OP3 O N N 143 DT P P N N 144 DT OP1 O N N 145 DT OP2 O N N 146 DT "O5'" O N N 147 DT "C5'" C N N 148 DT "C4'" C N R 149 DT "O4'" O N N 150 DT "C3'" C N S 151 DT "O3'" O N N 152 DT "C2'" C N N 153 DT "C1'" C N R 154 DT N1 N N N 155 DT C2 C N N 156 DT O2 O N N 157 DT N3 N N N 158 DT C4 C N N 159 DT O4 O N N 160 DT C5 C N N 161 DT C7 C N N 162 DT C6 C N N 163 DT HOP3 H N N 164 DT HOP2 H N N 165 DT "H5'" H N N 166 DT "H5''" H N N 167 DT "H4'" H N N 168 DT "H3'" H N N 169 DT "HO3'" H N N 170 DT "H2'" H N N 171 DT "H2''" H N N 172 DT "H1'" H N N 173 DT H3 H N N 174 DT H71 H N N 175 DT H72 H N N 176 DT H73 H N N 177 DT H6 H N N 178 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DNR P OP1 doub N N 113 DNR P OP2 sing N N 114 DNR P "O5'" sing N N 115 DNR P OP3 sing N N 116 DNR OP2 HOP2 sing N N 117 DNR "O5'" "C5'" sing N N 118 DNR "C5'" "C4'" sing N N 119 DNR "C5'" "H5'" sing N N 120 DNR "C5'" "H5''" sing N N 121 DNR "C4'" "O4'" sing N N 122 DNR "C4'" "C3'" sing N N 123 DNR "C4'" "H4'" sing N N 124 DNR "O4'" "C1'" sing N N 125 DNR "C1'" N1 sing N N 126 DNR "C1'" "C2'" sing N N 127 DNR "C1'" "H1'" sing N N 128 DNR N1 C6 sing N N 129 DNR N1 C2 sing N N 130 DNR C6 C5 doub N N 131 DNR C6 H6 sing N N 132 DNR C2 O2 doub N N 133 DNR C2 N3 sing N N 134 DNR N3 C4 doub N N 135 DNR N3 HN3 sing N N 136 DNR C4 N4 sing N N 137 DNR C4 C5 sing N N 138 DNR N4 H41 sing N N 139 DNR N4 H42 sing N N 140 DNR C5 H5 sing N N 141 DNR "C2'" "C3'" sing N N 142 DNR "C2'" "H2'" sing N N 143 DNR "C2'" "H2''" sing N N 144 DNR "C3'" "O3'" sing N N 145 DNR "C3'" "H3'" sing N N 146 DNR "O3'" "HO3'" sing N N 147 DNR OP3 HOP3 sing N N 148 DT OP3 P sing N N 149 DT OP3 HOP3 sing N N 150 DT P OP1 doub N N 151 DT P OP2 sing N N 152 DT P "O5'" sing N N 153 DT OP2 HOP2 sing N N 154 DT "O5'" "C5'" sing N N 155 DT "C5'" "C4'" sing N N 156 DT "C5'" "H5'" sing N N 157 DT "C5'" "H5''" sing N N 158 DT "C4'" "O4'" sing N N 159 DT "C4'" "C3'" sing N N 160 DT "C4'" "H4'" sing N N 161 DT "O4'" "C1'" sing N N 162 DT "C3'" "O3'" sing N N 163 DT "C3'" "C2'" sing N N 164 DT "C3'" "H3'" sing N N 165 DT "O3'" "HO3'" sing N N 166 DT "C2'" "C1'" sing N N 167 DT "C2'" "H2'" sing N N 168 DT "C2'" "H2''" sing N N 169 DT "C1'" N1 sing N N 170 DT "C1'" "H1'" sing N N 171 DT N1 C2 sing N N 172 DT N1 C6 sing N N 173 DT C2 O2 doub N N 174 DT C2 N3 sing N N 175 DT N3 C4 sing N N 176 DT N3 H3 sing N N 177 DT C4 O4 doub N N 178 DT C4 C5 sing N N 179 DT C5 C7 sing N N 180 DT C5 C6 doub N N 181 DT C7 H71 sing N N 182 DT C7 H72 sing N N 183 DT C7 H73 sing N N 184 DT C6 H6 sing N N 185 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1R2L 'double helix' 1R2L 'parallel strands' 1R2L 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DNR 1 1_555 B DC 1 1_555 1.809 2.030 -0.076 13.457 -42.281 177.676 1 A_DNR1:DC1_B A 1 ? B 1 ? 15 2 1 A DNR 2 1_555 B DC 2 1_555 1.731 1.816 0.332 -0.523 -39.644 178.426 2 A_DNR2:DC2_B A 2 ? B 2 ? 15 2 1 A DA 3 1_555 B DT 3 1_555 0.359 0.237 -0.881 24.758 -3.023 174.113 3 A_DA3:DT3_B A 3 ? B 3 ? 21 2 1 A DT 4 1_555 B DA 4 1_555 0.167 0.137 0.886 30.674 -9.308 177.249 4 A_DT4:DA4_B A 4 ? B 4 ? 21 2 1 A DA 5 1_555 B DT 5 1_555 -0.020 0.331 -0.515 28.838 0.445 172.777 5 A_DA5:DT5_B A 5 ? B 5 ? 21 2 1 A DA 6 1_555 B DG 6 1_555 -1.550 0.145 -0.354 10.952 2.208 175.503 6 A_DA6:DG6_B A 6 ? B 6 ? ? ? 1 A DT 7 1_555 B DA 7 1_555 0.213 -0.647 -0.013 -16.337 -5.909 -170.810 7 A_DT7:DA7_B A 7 ? B 7 ? 21 2 1 A DT 8 1_555 B DA 8 1_555 0.154 -0.764 0.248 -19.264 -17.686 -169.018 8 A_DT8:DA8_B A 8 ? B 8 ? 21 2 1 A DT 9 1_555 B DA 9 1_555 0.288 -1.083 -0.703 -3.042 -32.359 -160.383 9 A_DT9:DA9_B A 9 ? B 9 ? 21 2 1 A DA 10 1_555 B DT 10 1_555 0.017 1.462 -0.177 13.941 53.735 176.842 10 A_DA10:DT10_B A 10 ? B 10 ? 21 2 1 A DNR 12 1_555 B DC 12 1_555 2.484 1.974 -1.321 -30.168 -20.256 161.553 11 A_DNR12:DC12_B A 12 ? B 12 ? 15 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DNR 1 1_555 B DC 1 1_555 A DNR 2 1_555 B DC 2 1_555 -0.030 -0.156 3.128 5.021 -3.472 49.181 0.059 0.391 3.115 -4.153 -6.006 49.535 1 AA_DNR1DNR2:DC2DC1_BB A 1 ? B 1 ? A 2 ? B 2 ? 1 A DNR 2 1_555 B DC 2 1_555 A DA 3 1_555 B DT 3 1_555 -0.108 -0.346 2.642 -1.945 9.204 43.926 -1.120 0.000 2.525 12.139 2.565 44.874 2 AA_DNR2DA3:DT3DC2_BB A 2 ? B 2 ? A 3 ? B 3 ? 1 A DA 3 1_555 B DT 3 1_555 A DT 4 1_555 B DA 4 1_555 -0.506 0.396 3.155 8.062 -13.763 37.743 1.980 1.553 2.699 -20.208 -11.838 40.861 3 AA_DA3DT4:DA4DT3_BB A 3 ? B 3 ? A 4 ? B 4 ? 1 A DT 4 1_555 B DA 4 1_555 A DA 5 1_555 B DT 5 1_555 -0.056 -1.067 2.828 -2.064 12.686 31.474 -3.468 -0.172 2.243 22.259 3.622 33.936 4 AA_DT4DA5:DT5DA4_BB A 4 ? B 4 ? A 5 ? B 5 ? 1 A DA 5 1_555 B DT 5 1_555 A DA 6 1_555 B DG 6 1_555 -0.906 -0.423 3.119 1.718 -4.611 37.840 -0.090 1.594 3.104 -7.074 -2.635 38.147 5 AA_DA5DA6:DG6DT5_BB A 5 ? B 5 ? A 6 ? B 6 ? 1 A DA 6 1_555 B DG 6 1_555 A DT 7 1_555 B DA 7 1_555 -0.668 -0.067 3.128 1.265 4.425 -146.014 0.016 -0.343 3.131 -2.313 0.661 -146.042 6 AA_DA6DT7:DA7DG6_BB A 6 ? B 6 ? A 7 ? B 7 ? 1 A DT 7 1_555 B DA 7 1_555 A DT 8 1_555 B DA 8 1_555 -0.174 -0.920 2.900 5.107 3.750 34.461 -2.019 0.956 2.735 6.264 -8.530 35.021 7 AA_DT7DT8:DA8DA7_BB A 7 ? B 7 ? A 8 ? B 8 ? 1 A DT 8 1_555 B DA 8 1_555 A DT 9 1_555 B DA 9 1_555 0.037 -0.388 2.692 1.581 -8.539 38.418 0.271 0.102 2.713 -12.778 -2.365 39.351 8 AA_DT8DT9:DA9DA8_BB A 8 ? B 8 ? A 9 ? B 9 ? 1 A DT 9 1_555 B DA 9 1_555 A DA 10 1_555 B DT 10 1_555 -1.144 1.246 2.871 4.401 0.102 -148.240 -0.648 -0.578 2.883 -0.053 2.288 -148.264 9 AA_DT9DA10:DT10DA9_BB A 9 ? B 9 ? A 10 ? B 10 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Varian INOVA 600 2 ? Bruker AMX 500 # _atom_sites.entry_id 1R2L _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_