HEADER LYASE 09-OCT-03 1R53 TITLE CRYSTAL STRUCTURE OF THE BIFUNCTIONAL CHORISMATE SYNTHASE FROM TITLE 2 SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHORISMATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PHOSPHOLYASE; COMPND 5 EC: 4.2.3.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: YGL148W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET9 KEYWDS TWO LAYERS ALPHA-BETA, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.QUEVILLON-CHERUEL,N.LEULLIOT,P.MEYER,M.GRAILLE,M.BREMANG, AUTHOR 2 K.BLONDEAU,I.SOREL,A.POUPON,J.JANIN,H.VAN TILBEURGH REVDAT 6 13-MAR-24 1R53 1 REMARK SEQADV REVDAT 5 11-OCT-17 1R53 1 REMARK REVDAT 4 13-JUL-11 1R53 1 VERSN REVDAT 3 24-FEB-09 1R53 1 VERSN REVDAT 2 20-JAN-04 1R53 1 JRNL REVDAT 1 23-DEC-03 1R53 0 JRNL AUTH S.QUEVILLON-CHERUEL,N.LEULLIOT,P.MEYER,M.GRAILLE,M.BREMANG, JRNL AUTH 2 K.BLONDEAU,I.SOREL,A.POUPON,J.JANIN,H.VAN TILBEURGH JRNL TITL CRYSTAL STRUCTURE OF THE BIFUNCTIONAL CHORISMATE SYNTHASE JRNL TITL 2 FROM SACCHAROMYCES CEREVISIAE JRNL REF J.BIOL.CHEM. V. 279 619 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14573601 JRNL DOI 10.1074/JBC.M310380200 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 16076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 852 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 922 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2170 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.735 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2162 ; 0.034 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2002 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2930 ; 1.715 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4677 ; 0.940 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 6.549 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2424 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 403 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 465 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2305 ; 0.243 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1272 ; 0.094 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 85 ; 0.207 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.125 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 96 ; 0.267 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.181 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1430 ; 1.097 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2299 ; 2.063 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 732 ; 2.813 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 627 ; 4.809 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63849 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 27.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA-CITRATE, EDTA, DDT, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.75800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.33200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.51600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.75800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.33200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.51600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.75800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.33200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.51600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.75800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.33200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.51600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A REMARK 300 TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 17070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 74.66400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 74.66400 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 486 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 49 REMARK 465 GLN A 50 REMARK 465 SER A 51 REMARK 465 LYS A 52 REMARK 465 LEU A 53 REMARK 465 SER A 54 REMARK 465 THR A 55 REMARK 465 PRO A 56 REMARK 465 ARG A 57 REMARK 465 ASP A 58 REMARK 465 GLU A 59 REMARK 465 LYS A 60 REMARK 465 GLU A 86 REMARK 465 ASP A 87 REMARK 465 GLN A 88 REMARK 465 ARG A 89 REMARK 465 PRO A 90 REMARK 465 HIS A 91 REMARK 465 ASP A 92 REMARK 465 TYR A 93 REMARK 465 SER A 94 REMARK 465 ASP A 95 REMARK 465 MET A 96 REMARK 465 ASP A 97 REMARK 465 LYS A 98 REMARK 465 PHE A 99 REMARK 465 PRO A 100 REMARK 465 ARG A 101 REMARK 465 PRO A 102 REMARK 465 SER A 103 REMARK 465 HIS A 104 REMARK 465 ALA A 105 REMARK 465 ASP A 106 REMARK 465 PHE A 107 REMARK 465 THR A 108 REMARK 465 TYR A 109 REMARK 465 SER A 110 REMARK 465 GLU A 111 REMARK 465 LYS A 112 REMARK 465 TYR A 113 REMARK 465 GLY A 114 REMARK 465 ILE A 115 REMARK 465 LYS A 116 REMARK 465 ALA A 117 REMARK 465 SER A 118 REMARK 465 SER A 119 REMARK 465 GLY A 120 REMARK 465 GLY A 121 REMARK 465 GLY A 122 REMARK 465 ARG A 123 REMARK 465 ALA A 124 REMARK 465 SER A 125 REMARK 465 ALA A 126 REMARK 465 PHE A 277 REMARK 465 GLU A 278 REMARK 465 LYS A 279 REMARK 465 GLU A 280 REMARK 465 THR A 281 REMARK 465 ASN A 282 REMARK 465 ARG A 283 REMARK 465 LEU A 284 REMARK 465 ALA A 314 REMARK 465 THR A 315 REMARK 465 ILE A 316 REMARK 465 SER A 317 REMARK 465 GLN A 318 REMARK 465 GLU A 319 REMARK 465 GLN A 320 REMARK 465 LYS A 321 REMARK 465 THR A 322 REMARK 465 ALA A 323 REMARK 465 THR A 324 REMARK 465 TYR A 325 REMARK 465 ASP A 326 REMARK 465 GLY A 327 REMARK 465 GLU A 328 REMARK 465 GLU A 329 REMARK 465 GLY A 330 REMARK 465 ILE A 331 REMARK 465 LEU A 332 REMARK 465 ALA A 333 REMARK 465 ALA A 334 REMARK 465 LYS A 335 REMARK 465 GLY A 336 REMARK 465 ARG A 372 REMARK 465 SER A 373 REMARK 465 VAL A 374 REMARK 465 VAL A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 HIS A 379 REMARK 465 HIS A 380 REMARK 465 HIS A 381 REMARK 465 HIS A 382 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 287 CG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 1 CB CG SD CE REMARK 480 SER A 16 OG REMARK 480 HIS A 17 CG ND1 CD2 CE1 NE2 REMARK 480 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 84 CG CD CE NZ REMARK 480 ASN A 85 CG OD1 ND2 REMARK 480 ARG A 127 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 182 CG CD OE1 OE2 REMARK 480 GLN A 262 CG CD OE1 NE2 REMARK 480 TYR A 276 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 ARG A 285 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 287 CD CE NZ REMARK 480 ARG A 337 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 262 O HOH A 483 1.20 REMARK 500 CD GLN A 262 O HOH A 483 1.97 REMARK 500 O LEU A 143 OG SER A 147 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG MET A 1 NH1 ARG A 9 3555 1.48 REMARK 500 NH1 ARG A 127 CB PRO A 233 2565 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 81 SD MET A 81 CE -0.629 REMARK 500 MET A 163 SD MET A 163 CE -0.607 REMARK 500 MET A 246 SD MET A 246 CE -0.438 REMARK 500 MET A 353 SD MET A 353 CE -0.726 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 224 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 224 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 236 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU A 247 CA - CB - CG ANGL. DEV. = -18.4 DEGREES REMARK 500 ARG A 285 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 337 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 62 -82.34 -137.28 REMARK 500 VAL A 63 111.59 100.27 REMARK 500 SER A 147 -20.63 -175.14 REMARK 500 PRO A 193 45.93 -84.64 REMARK 500 ASP A 236 40.62 -105.80 REMARK 500 ALA A 251 -0.87 71.30 REMARK 500 ASP A 339 -85.25 -106.77 REMARK 500 PRO A 340 37.70 -96.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R52 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN OTHER SPACE GROUP(P 1) DBREF 1R53 A 1 376 UNP P28777 AROC_YEAST 1 376 SEQADV 1R53 HIS A 377 UNP P28777 EXPRESSION TAG SEQADV 1R53 HIS A 378 UNP P28777 EXPRESSION TAG SEQADV 1R53 HIS A 379 UNP P28777 EXPRESSION TAG SEQADV 1R53 HIS A 380 UNP P28777 EXPRESSION TAG SEQADV 1R53 HIS A 381 UNP P28777 EXPRESSION TAG SEQADV 1R53 HIS A 382 UNP P28777 EXPRESSION TAG SEQRES 1 A 382 MET SER THR PHE GLY LYS LEU PHE ARG VAL THR THR TYR SEQRES 2 A 382 GLY GLU SER HIS CYS LYS SER VAL GLY CYS ILE VAL ASP SEQRES 3 A 382 GLY VAL PRO PRO GLY MET SER LEU THR GLU ALA ASP ILE SEQRES 4 A 382 GLN PRO GLN LEU THR ARG ARG ARG PRO GLY GLN SER LYS SEQRES 5 A 382 LEU SER THR PRO ARG ASP GLU LYS ASP ARG VAL GLU ILE SEQRES 6 A 382 GLN SER GLY THR GLU PHE GLY LYS THR LEU GLY THR PRO SEQRES 7 A 382 ILE ALA MET MET ILE LYS ASN GLU ASP GLN ARG PRO HIS SEQRES 8 A 382 ASP TYR SER ASP MET ASP LYS PHE PRO ARG PRO SER HIS SEQRES 9 A 382 ALA ASP PHE THR TYR SER GLU LYS TYR GLY ILE LYS ALA SEQRES 10 A 382 SER SER GLY GLY GLY ARG ALA SER ALA ARG GLU THR ILE SEQRES 11 A 382 GLY ARG VAL ALA SER GLY ALA ILE ALA GLU LYS PHE LEU SEQRES 12 A 382 ALA GLN ASN SER ASN VAL GLU ILE VAL ALA PHE VAL THR SEQRES 13 A 382 GLN ILE GLY GLU ILE LYS MET ASN ARG ASP SER PHE ASP SEQRES 14 A 382 PRO GLU PHE GLN HIS LEU LEU ASN THR ILE THR ARG GLU SEQRES 15 A 382 LYS VAL ASP SER MET GLY PRO ILE ARG CYS PRO ASP ALA SEQRES 16 A 382 SER VAL ALA GLY LEU MET VAL LYS GLU ILE GLU LYS TYR SEQRES 17 A 382 ARG GLY ASN LYS ASP SER ILE GLY GLY VAL VAL THR CYS SEQRES 18 A 382 VAL VAL ARG ASN LEU PRO THR GLY LEU GLY GLU PRO CYS SEQRES 19 A 382 PHE ASP LYS LEU GLU ALA MET LEU ALA HIS ALA MET LEU SEQRES 20 A 382 SER ILE PRO ALA SER LYS GLY PHE GLU ILE GLY SER GLY SEQRES 21 A 382 PHE GLN GLY VAL SER VAL PRO GLY SER LYS HIS ASN ASP SEQRES 22 A 382 PRO PHE TYR PHE GLU LYS GLU THR ASN ARG LEU ARG THR SEQRES 23 A 382 LYS THR ASN ASN SER GLY GLY VAL GLN GLY GLY ILE SER SEQRES 24 A 382 ASN GLY GLU ASN ILE TYR PHE SER VAL PRO PHE LYS SER SEQRES 25 A 382 VAL ALA THR ILE SER GLN GLU GLN LYS THR ALA THR TYR SEQRES 26 A 382 ASP GLY GLU GLU GLY ILE LEU ALA ALA LYS GLY ARG HIS SEQRES 27 A 382 ASP PRO ALA VAL THR PRO ARG ALA ILE PRO ILE VAL GLU SEQRES 28 A 382 ALA MET THR ALA LEU VAL LEU ALA ASP ALA LEU LEU ILE SEQRES 29 A 382 GLN LYS ALA ARG ASP PHE SER ARG SER VAL VAL HIS HIS SEQRES 30 A 382 HIS HIS HIS HIS HIS FORMUL 2 HOH *113(H2 O) HELIX 1 1 THR A 35 ASP A 38 5 4 HELIX 2 2 ILE A 39 ARG A 45 1 7 HELIX 3 3 THR A 129 ASN A 146 1 18 HELIX 4 4 ASP A 169 ILE A 179 1 11 HELIX 5 5 THR A 180 MET A 187 1 8 HELIX 6 6 ASP A 194 ASN A 211 1 18 HELIX 7 7 LYS A 237 SER A 248 1 12 HELIX 8 8 PHE A 261 VAL A 266 5 6 HELIX 9 9 PRO A 267 ASP A 273 1 7 HELIX 10 10 ALA A 341 ALA A 346 1 6 HELIX 11 11 ALA A 346 SER A 371 1 26 SHEET 1 A 5 THR A 3 PHE A 4 0 SHEET 2 A 5 ARG A 9 TYR A 13 -1 O VAL A 10 N PHE A 4 SHEET 3 A 5 SER A 20 ASP A 26 -1 O ASP A 26 N ARG A 9 SHEET 4 A 5 ILE A 79 LYS A 84 -1 O ILE A 79 N VAL A 25 SHEET 5 A 5 GLU A 64 ILE A 65 -1 N GLU A 64 O MET A 82 SHEET 1 B 2 THR A 69 GLU A 70 0 SHEET 2 B 2 LYS A 73 THR A 74 -1 O LYS A 73 N GLU A 70 SHEET 1 C 5 ILE A 161 LYS A 162 0 SHEET 2 C 5 GLU A 150 ILE A 158 -1 N ILE A 158 O ILE A 161 SHEET 3 C 5 GLY A 217 ARG A 224 -1 O THR A 220 N PHE A 154 SHEET 4 C 5 ILE A 304 PHE A 310 -1 O PHE A 306 N CYS A 221 SHEET 5 C 5 GLU A 256 ILE A 257 -1 N GLU A 256 O SER A 307 SHEET 1 D 2 VAL A 294 GLN A 295 0 SHEET 2 D 2 ILE A 298 SER A 299 -1 O ILE A 298 N GLN A 295 CISPEP 1 PRO A 233 CYS A 234 0 6.36 CISPEP 2 ASP A 339 PRO A 340 0 -20.67 CRYST1 57.516 74.664 155.032 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017386 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013393 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006450 0.00000