HEADER PROTEIN BINDING 10-OCT-03 1R5E TITLE SOLUTION STRUCTURE OF THE FOLDED CORE OF PSEUDOMONAS SYRINGAE EFFECTOR TITLE 2 PROTEIN, AVRPTO COMPND MOL_ID: 1; COMPND 2 MOLECULE: AVIRULENCE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRAVRPTO (RESIDUES 29-133); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE; SOURCE 3 ORGANISM_TAXID: 317; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFLAG-CTC KEYWDS THREE-HELIX BUNDLE, OMEGA LOOP, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR J.WULF,P.E.PASCUZZI,G.B.MARTIN,L.K.NICHOLSON REVDAT 4 21-DEC-22 1R5E 1 SEQADV REVDAT 3 02-MAR-22 1R5E 1 REMARK SEQADV REVDAT 2 24-FEB-09 1R5E 1 VERSN REVDAT 1 19-OCT-04 1R5E 0 JRNL AUTH J.WULF,P.E.PASCUZZI,A.FAHMY,G.B.MARTIN,L.K.NICHOLSON JRNL TITL THE SOLUTION STRUCTURE OF TYPE III EFFECTOR PROTEIN AVRPTO JRNL TITL 2 REVEALS CONFORMATIONAL AND DYNAMIC FEATURES IMPORTANT FOR JRNL TITL 3 PLANT PATHOGENESIS. JRNL REF STRUCTURE V. 12 1257 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15242602 JRNL DOI 10.1016/J.STR.2004.04.017 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, STEIN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON A TOTAL OF 1898 REMARK 3 RESTRAINTS, 1584 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 206 REMARK 3 DIHEDRAL ANGLE RESTRAINTS,108 DISTANCE RESTRAINTS FROM HYDROGEN REMARK 3 BONDS REMARK 4 REMARK 4 1R5E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020458. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 15MM PHOSPHATE, 245MM SODIUM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM TRAVRPTO U-15N;10MM NA2HPO4 REMARK 210 5MM KH2PO4 225MM NACL PH6; 1MM REMARK 210 TRAVRPTO U-15N,13C;10MM NA2HPO4 REMARK 210 5MM KH2PO4 225MM NACL PH6; 1MM REMARK 210 TRAVRPTO U-15N,13C;10MM NA2HPO4 REMARK 210 5MM KH2PO4 225MM NACL PH6 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, PIPP REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON REMARK 210 -BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 10 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 MET A 28 REMARK 465 VAL A 134 REMARK 465 ASP A 135 REMARK 465 TYR A 136 REMARK 465 LYS A 137 REMARK 465 ASP A 138 REMARK 465 ASP A 139 REMARK 465 ASP A 140 REMARK 465 ASP A 141 REMARK 465 LYS A 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 50 -82.51 -56.42 REMARK 500 1 ARG A 51 -68.57 -148.63 REMARK 500 1 GLN A 60 -67.24 -123.95 REMARK 500 1 ALA A 61 151.24 -39.97 REMARK 500 1 MET A 85 -49.58 -130.18 REMARK 500 1 HIS A 87 71.22 -67.71 REMARK 500 1 THR A 91 -167.74 -103.46 REMARK 500 1 ALA A 93 34.47 -94.28 REMARK 500 1 SER A 94 -114.44 -99.47 REMARK 500 1 ASN A 97 166.71 -47.15 REMARK 500 1 PRO A 98 55.22 -68.73 REMARK 500 2 PRO A 50 -85.44 -65.47 REMARK 500 2 ARG A 51 -78.36 -148.34 REMARK 500 2 GLN A 60 -63.68 -126.36 REMARK 500 2 MET A 85 -45.76 -130.22 REMARK 500 2 ALA A 93 34.17 -94.21 REMARK 500 2 SER A 94 -114.62 -99.79 REMARK 500 3 ALA A 47 -167.70 -77.75 REMARK 500 3 PRO A 50 -79.31 -60.69 REMARK 500 3 ARG A 51 -69.32 -148.18 REMARK 500 3 GLN A 60 -67.61 -123.89 REMARK 500 3 ALA A 61 150.82 -39.26 REMARK 500 3 TYR A 69 -71.55 -54.47 REMARK 500 3 ASP A 84 38.66 -90.90 REMARK 500 3 MET A 85 -46.59 -130.44 REMARK 500 3 MET A 90 -72.99 -69.50 REMARK 500 3 SER A 94 -179.43 -176.54 REMARK 500 3 PRO A 98 40.87 -87.16 REMARK 500 4 PRO A 50 -77.45 -55.93 REMARK 500 4 ARG A 51 -70.43 -148.70 REMARK 500 4 GLN A 60 -63.68 -127.27 REMARK 500 4 ALA A 61 150.74 -40.47 REMARK 500 4 ASP A 84 40.94 -91.43 REMARK 500 4 MET A 85 -40.47 -130.50 REMARK 500 4 HIS A 87 -160.23 -62.28 REMARK 500 4 ARG A 88 -64.32 -131.39 REMARK 500 4 ALA A 93 34.12 -92.72 REMARK 500 4 SER A 94 -114.74 -103.83 REMARK 500 4 PRO A 98 56.83 -69.10 REMARK 500 5 PRO A 50 -83.45 -60.57 REMARK 500 5 ARG A 51 -71.14 -148.17 REMARK 500 5 GLN A 60 -62.62 -129.43 REMARK 500 5 ALA A 61 150.48 -42.62 REMARK 500 5 ASP A 84 35.48 -96.22 REMARK 500 5 MET A 85 -51.70 -130.87 REMARK 500 5 HIS A 87 71.36 -65.06 REMARK 500 5 THR A 91 137.64 -176.85 REMARK 500 5 ALA A 93 35.80 22.17 REMARK 500 5 PRO A 98 56.97 -69.39 REMARK 500 5 ASP A 132 79.88 -150.05 REMARK 500 REMARK 500 THIS ENTRY HAS 309 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1R5E A 29 133 UNP Q08242 Q08242_PSESX 29 133 SEQADV 1R5E MET A 28 UNP Q08242 CLONING ARTIFACT SEQADV 1R5E VAL A 134 UNP Q08242 CLONING ARTIFACT SEQADV 1R5E ASP A 135 UNP Q08242 EXPRESSION TAG SEQADV 1R5E TYR A 136 UNP Q08242 EXPRESSION TAG SEQADV 1R5E LYS A 137 UNP Q08242 EXPRESSION TAG SEQADV 1R5E ASP A 138 UNP Q08242 EXPRESSION TAG SEQADV 1R5E ASP A 139 UNP Q08242 EXPRESSION TAG SEQADV 1R5E ASP A 140 UNP Q08242 EXPRESSION TAG SEQADV 1R5E ASP A 141 UNP Q08242 EXPRESSION TAG SEQADV 1R5E LYS A 142 UNP Q08242 EXPRESSION TAG SEQRES 1 A 115 MET ASP ASN VAL THR SER SER GLN LEU LEU SER VAL ARG SEQRES 2 A 115 HIS GLN LEU ALA GLU SER ALA GLY LEU PRO ARG ASP GLN SEQRES 3 A 115 HIS GLU PHE VAL SER SER GLN ALA PRO GLN SER LEU ARG SEQRES 4 A 115 ASN ARG TYR ASN ASN LEU TYR SER HIS THR GLN ARG THR SEQRES 5 A 115 LEU ASP MET ALA ASP MET GLN HIS ARG TYR MET THR GLY SEQRES 6 A 115 ALA SER GLY ILE ASN PRO GLY MET LEU PRO HIS GLU ASN SEQRES 7 A 115 VAL ASP ASP MET ARG SER ALA ILE THR ASP TRP SER ASP SEQRES 8 A 115 MET ARG GLU ALA LEU GLN HIS ALA MET GLY ILE HIS ALA SEQRES 9 A 115 ASP ILE VAL ASP TYR LYS ASP ASP ASP ASP LYS HELIX 1 1 THR A 32 ALA A 47 1 16 HELIX 2 2 ARG A 51 SER A 58 1 8 HELIX 3 3 PRO A 62 ASP A 84 1 23 HELIX 4 4 LEU A 101 ILE A 129 1 29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1