data_1R9F # _entry.id 1R9F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1R9F pdb_00001r9f 10.2210/pdb1r9f/pdb NDB PR0106 ? ? RCSB RCSB020601 ? ? WWPDB D_1000020601 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-01-27 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-27 5 'Structure model' 1 4 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_special_symmetry 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' pdbx_entry_details 9 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1R9F _pdbx_database_status.recvd_initial_deposition_date 2003-10-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ye, K.' 1 'Malinina, L.' 2 'Patel, D.J.' 3 # _citation.id primary _citation.title 'Recognition of small interfering RNA by a viral suppressor of RNA' _citation.journal_abbrev Nature _citation.journal_volume 426 _citation.page_first 874 _citation.page_last 878 _citation.year 2003 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14661029 _citation.pdbx_database_id_DOI 10.1038/nature02213 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ye, K.' 1 ? primary 'Malinina, L.' 2 ? primary 'Patel, D.J.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*AP*UP*U)-3'" 6690.004 1 ? ? ? ? 2 polymer syn "5'-R(*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)-3'" 6666.964 1 ? ? ? ? 3 polymer man 'Core protein P19' 15751.966 1 ? 'L144M, L147M' 'Residues 27-158' ? 4 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 5 water nat water 18.015 70 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CGUACGCGGAAUACUUCGAUU CGUACGCGGAAUACUUCGAUU B ? 2 polyribonucleotide no no UCGAAGUAUUCCGCGUACGUU UCGAAGUAUUCCGCGUACGUU C ? 3 'polypeptide(L)' no yes ;GSH(MSE)TSPFKLPDESPSWTEWRLHNDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYA ASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCE(MSE)AIRSKQE(MSE)LQ(MSE)APIEVESNVSR ; ;GSHMTSPFKLPDESPSWTEWRLHNDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRF FGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQMAPIEVESNVSR ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SULFATE ION' SO4 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 U n 1 4 A n 1 5 C n 1 6 G n 1 7 C n 1 8 G n 1 9 G n 1 10 A n 1 11 A n 1 12 U n 1 13 A n 1 14 C n 1 15 U n 1 16 U n 1 17 C n 1 18 G n 1 19 A n 1 20 U n 1 21 U n 2 1 U n 2 2 C n 2 3 G n 2 4 A n 2 5 A n 2 6 G n 2 7 U n 2 8 A n 2 9 U n 2 10 U n 2 11 C n 2 12 C n 2 13 G n 2 14 C n 2 15 G n 2 16 U n 2 17 A n 2 18 C n 2 19 G n 2 20 U n 2 21 U n 3 1 GLY n 3 2 SER n 3 3 HIS n 3 4 MSE n 3 5 THR n 3 6 SER n 3 7 PRO n 3 8 PHE n 3 9 LYS n 3 10 LEU n 3 11 PRO n 3 12 ASP n 3 13 GLU n 3 14 SER n 3 15 PRO n 3 16 SER n 3 17 TRP n 3 18 THR n 3 19 GLU n 3 20 TRP n 3 21 ARG n 3 22 LEU n 3 23 HIS n 3 24 ASN n 3 25 ASP n 3 26 GLU n 3 27 THR n 3 28 ASN n 3 29 SER n 3 30 ASN n 3 31 GLN n 3 32 ASP n 3 33 ASN n 3 34 PRO n 3 35 LEU n 3 36 GLY n 3 37 PHE n 3 38 LYS n 3 39 GLU n 3 40 SER n 3 41 TRP n 3 42 GLY n 3 43 PHE n 3 44 GLY n 3 45 LYS n 3 46 VAL n 3 47 VAL n 3 48 PHE n 3 49 LYS n 3 50 ARG n 3 51 TYR n 3 52 LEU n 3 53 ARG n 3 54 TYR n 3 55 ASP n 3 56 ARG n 3 57 THR n 3 58 GLU n 3 59 ALA n 3 60 SER n 3 61 LEU n 3 62 HIS n 3 63 ARG n 3 64 VAL n 3 65 LEU n 3 66 GLY n 3 67 SER n 3 68 TRP n 3 69 THR n 3 70 GLY n 3 71 ASP n 3 72 SER n 3 73 VAL n 3 74 ASN n 3 75 TYR n 3 76 ALA n 3 77 ALA n 3 78 SER n 3 79 ARG n 3 80 PHE n 3 81 PHE n 3 82 GLY n 3 83 PHE n 3 84 ASP n 3 85 GLN n 3 86 ILE n 3 87 GLY n 3 88 CYS n 3 89 THR n 3 90 TYR n 3 91 SER n 3 92 ILE n 3 93 ARG n 3 94 PHE n 3 95 ARG n 3 96 GLY n 3 97 VAL n 3 98 SER n 3 99 ILE n 3 100 THR n 3 101 VAL n 3 102 SER n 3 103 GLY n 3 104 GLY n 3 105 SER n 3 106 ARG n 3 107 THR n 3 108 LEU n 3 109 GLN n 3 110 HIS n 3 111 LEU n 3 112 CYS n 3 113 GLU n 3 114 MSE n 3 115 ALA n 3 116 ILE n 3 117 ARG n 3 118 SER n 3 119 LYS n 3 120 GLN n 3 121 GLU n 3 122 MSE n 3 123 LEU n 3 124 GLN n 3 125 MSE n 3 126 ALA n 3 127 PRO n 3 128 ILE n 3 129 GLU n 3 130 VAL n 3 131 GLU n 3 132 SER n 3 133 ASN n 3 134 VAL n 3 135 SER n 3 136 ARG n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Tombusvirus _entity_src_gen.pdbx_gene_src_gene p19 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Tomato bushy stunt virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 12145 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? ;5'-OH and 3'-OH ; 2 1 sample ? ? ? ? ? ;5'-OH and 3'-OH ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C B . n A 1 2 G 2 2 2 G G B . n A 1 3 U 3 3 3 U U B . n A 1 4 A 4 4 4 A A B . n A 1 5 C 5 5 5 C C B . n A 1 6 G 6 6 6 G G B . n A 1 7 C 7 7 7 C C B . n A 1 8 G 8 8 8 G G B . n A 1 9 G 9 9 9 G G B . n A 1 10 A 10 10 10 A A B . n A 1 11 A 11 11 11 A A B . n A 1 12 U 12 12 12 U U B . n A 1 13 A 13 13 13 A A B . n A 1 14 C 14 14 14 C C B . n A 1 15 U 15 15 15 U U B . n A 1 16 U 16 16 16 U U B . n A 1 17 C 17 17 17 C C B . n A 1 18 G 18 18 18 G G B . n A 1 19 A 19 19 19 A A B . n A 1 20 U 20 20 20 U U B . n A 1 21 U 21 21 ? ? ? B . n B 2 1 U 1 1 1 U U C . n B 2 2 C 2 2 2 C C C . n B 2 3 G 3 3 3 G G C . n B 2 4 A 4 4 4 A A C . n B 2 5 A 5 5 5 A A C . n B 2 6 G 6 6 6 G G C . n B 2 7 U 7 7 7 U U C . n B 2 8 A 8 8 8 A A C . n B 2 9 U 9 9 9 U U C . n B 2 10 U 10 10 10 U U C . n B 2 11 C 11 11 11 C C C . n B 2 12 C 12 12 12 C C C . n B 2 13 G 13 13 13 G G C . n B 2 14 C 14 14 14 C C C . n B 2 15 G 15 15 15 G G C . n B 2 16 U 16 16 16 U U C . n B 2 17 A 17 17 17 A A C . n B 2 18 C 18 18 18 C C C . n B 2 19 G 19 19 19 G G C . n B 2 20 U 20 20 20 U U C . n B 2 21 U 21 21 ? ? ? C . n C 3 1 GLY 1 23 ? ? ? A . n C 3 2 SER 2 24 ? ? ? A . n C 3 3 HIS 3 25 25 HIS HIS A . n C 3 4 MSE 4 26 26 MSE MSE A . n C 3 5 THR 5 27 27 THR THR A . n C 3 6 SER 6 28 28 SER SER A . n C 3 7 PRO 7 29 29 PRO PRO A . n C 3 8 PHE 8 30 30 PHE PHE A . n C 3 9 LYS 9 31 31 LYS LYS A . n C 3 10 LEU 10 32 32 LEU LEU A . n C 3 11 PRO 11 33 33 PRO PRO A . n C 3 12 ASP 12 34 34 ASP ASP A . n C 3 13 GLU 13 35 35 GLU GLU A . n C 3 14 SER 14 36 36 SER SER A . n C 3 15 PRO 15 37 37 PRO PRO A . n C 3 16 SER 16 38 38 SER SER A . n C 3 17 TRP 17 39 39 TRP TRP A . n C 3 18 THR 18 40 40 THR THR A . n C 3 19 GLU 19 41 41 GLU GLU A . n C 3 20 TRP 20 42 42 TRP TRP A . n C 3 21 ARG 21 43 43 ARG ARG A . n C 3 22 LEU 22 44 44 LEU LEU A . n C 3 23 HIS 23 45 45 HIS HIS A . n C 3 24 ASN 24 46 46 ASN ASN A . n C 3 25 ASP 25 47 47 ASP ASP A . n C 3 26 GLU 26 48 48 GLU GLU A . n C 3 27 THR 27 49 49 THR THR A . n C 3 28 ASN 28 50 ? ? ? A . n C 3 29 SER 29 51 ? ? ? A . n C 3 30 ASN 30 52 ? ? ? A . n C 3 31 GLN 31 53 53 GLN GLN A . n C 3 32 ASP 32 54 54 ASP ASP A . n C 3 33 ASN 33 55 55 ASN ASN A . n C 3 34 PRO 34 56 56 PRO PRO A . n C 3 35 LEU 35 57 57 LEU LEU A . n C 3 36 GLY 36 58 58 GLY GLY A . n C 3 37 PHE 37 59 59 PHE PHE A . n C 3 38 LYS 38 60 60 LYS LYS A . n C 3 39 GLU 39 61 61 GLU GLU A . n C 3 40 SER 40 62 62 SER SER A . n C 3 41 TRP 41 63 63 TRP TRP A . n C 3 42 GLY 42 64 64 GLY GLY A . n C 3 43 PHE 43 65 65 PHE PHE A . n C 3 44 GLY 44 66 66 GLY GLY A . n C 3 45 LYS 45 67 67 LYS LYS A . n C 3 46 VAL 46 68 68 VAL VAL A . n C 3 47 VAL 47 69 69 VAL VAL A . n C 3 48 PHE 48 70 70 PHE PHE A . n C 3 49 LYS 49 71 71 LYS LYS A . n C 3 50 ARG 50 72 72 ARG ARG A . n C 3 51 TYR 51 73 73 TYR TYR A . n C 3 52 LEU 52 74 74 LEU LEU A . n C 3 53 ARG 53 75 75 ARG ARG A . n C 3 54 TYR 54 76 76 TYR TYR A . n C 3 55 ASP 55 77 77 ASP ASP A . n C 3 56 ARG 56 78 78 ARG ARG A . n C 3 57 THR 57 79 79 THR THR A . n C 3 58 GLU 58 80 80 GLU GLU A . n C 3 59 ALA 59 81 81 ALA ALA A . n C 3 60 SER 60 82 82 SER SER A . n C 3 61 LEU 61 83 83 LEU LEU A . n C 3 62 HIS 62 84 84 HIS HIS A . n C 3 63 ARG 63 85 85 ARG ARG A . n C 3 64 VAL 64 86 86 VAL VAL A . n C 3 65 LEU 65 87 87 LEU LEU A . n C 3 66 GLY 66 88 88 GLY GLY A . n C 3 67 SER 67 89 89 SER SER A . n C 3 68 TRP 68 90 90 TRP TRP A . n C 3 69 THR 69 91 91 THR THR A . n C 3 70 GLY 70 92 92 GLY GLY A . n C 3 71 ASP 71 93 93 ASP ASP A . n C 3 72 SER 72 94 94 SER SER A . n C 3 73 VAL 73 95 95 VAL VAL A . n C 3 74 ASN 74 96 96 ASN ASN A . n C 3 75 TYR 75 97 97 TYR TYR A . n C 3 76 ALA 76 98 98 ALA ALA A . n C 3 77 ALA 77 99 99 ALA ALA A . n C 3 78 SER 78 100 100 SER SER A . n C 3 79 ARG 79 101 101 ARG ARG A . n C 3 80 PHE 80 102 102 PHE PHE A . n C 3 81 PHE 81 103 103 PHE PHE A . n C 3 82 GLY 82 104 104 GLY GLY A . n C 3 83 PHE 83 105 105 PHE PHE A . n C 3 84 ASP 84 106 106 ASP ASP A . n C 3 85 GLN 85 107 107 GLN GLN A . n C 3 86 ILE 86 108 108 ILE ILE A . n C 3 87 GLY 87 109 109 GLY GLY A . n C 3 88 CYS 88 110 110 CYS CYS A . n C 3 89 THR 89 111 111 THR THR A . n C 3 90 TYR 90 112 112 TYR TYR A . n C 3 91 SER 91 113 113 SER SER A . n C 3 92 ILE 92 114 114 ILE ILE A . n C 3 93 ARG 93 115 115 ARG ARG A . n C 3 94 PHE 94 116 116 PHE PHE A . n C 3 95 ARG 95 117 117 ARG ARG A . n C 3 96 GLY 96 118 118 GLY GLY A . n C 3 97 VAL 97 119 119 VAL VAL A . n C 3 98 SER 98 120 120 SER SER A . n C 3 99 ILE 99 121 121 ILE ILE A . n C 3 100 THR 100 122 122 THR THR A . n C 3 101 VAL 101 123 123 VAL VAL A . n C 3 102 SER 102 124 124 SER SER A . n C 3 103 GLY 103 125 125 GLY GLY A . n C 3 104 GLY 104 126 126 GLY GLY A . n C 3 105 SER 105 127 127 SER SER A . n C 3 106 ARG 106 128 128 ARG ARG A . n C 3 107 THR 107 129 129 THR THR A . n C 3 108 LEU 108 130 130 LEU LEU A . n C 3 109 GLN 109 131 131 GLN GLN A . n C 3 110 HIS 110 132 132 HIS HIS A . n C 3 111 LEU 111 133 133 LEU LEU A . n C 3 112 CYS 112 134 134 CYS CYS A . n C 3 113 GLU 113 135 135 GLU GLU A . n C 3 114 MSE 114 136 136 MSE MSE A . n C 3 115 ALA 115 137 137 ALA ALA A . n C 3 116 ILE 116 138 138 ILE ILE A . n C 3 117 ARG 117 139 139 ARG ARG A . n C 3 118 SER 118 140 140 SER SER A . n C 3 119 LYS 119 141 141 LYS LYS A . n C 3 120 GLN 120 142 142 GLN GLN A . n C 3 121 GLU 121 143 143 GLU GLU A . n C 3 122 MSE 122 144 144 MSE MSE A . n C 3 123 LEU 123 145 145 LEU LEU A . n C 3 124 GLN 124 146 146 GLN GLN A . n C 3 125 MSE 125 147 147 MSE MSE A . n C 3 126 ALA 126 148 148 ALA ALA A . n C 3 127 PRO 127 149 ? ? ? A . n C 3 128 ILE 128 150 ? ? ? A . n C 3 129 GLU 129 151 ? ? ? A . n C 3 130 VAL 130 152 ? ? ? A . n C 3 131 GLU 131 153 ? ? ? A . n C 3 132 SER 132 154 ? ? ? A . n C 3 133 ASN 133 155 ? ? ? A . n C 3 134 VAL 134 156 ? ? ? A . n C 3 135 SER 135 157 ? ? ? A . n C 3 136 ARG 136 158 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 1 159 101 SO4 SO4 A . E 4 SO4 1 160 102 SO4 SO4 A . F 5 HOH 1 31 31 HOH HOH B . F 5 HOH 2 39 39 HOH HOH B . F 5 HOH 3 43 43 HOH HOH B . F 5 HOH 4 62 62 HOH HOH B . G 5 HOH 1 22 17 HOH HOH C . G 5 HOH 2 23 27 HOH HOH C . G 5 HOH 3 24 40 HOH HOH C . G 5 HOH 4 25 46 HOH HOH C . H 5 HOH 1 161 1 HOH HOH A . H 5 HOH 2 162 2 HOH HOH A . H 5 HOH 3 163 3 HOH HOH A . H 5 HOH 4 164 4 HOH HOH A . H 5 HOH 5 165 5 HOH HOH A . H 5 HOH 6 166 6 HOH HOH A . H 5 HOH 7 167 7 HOH HOH A . H 5 HOH 8 168 8 HOH HOH A . H 5 HOH 9 169 9 HOH HOH A . H 5 HOH 10 170 10 HOH HOH A . H 5 HOH 11 171 11 HOH HOH A . H 5 HOH 12 172 12 HOH HOH A . H 5 HOH 13 173 13 HOH HOH A . H 5 HOH 14 174 14 HOH HOH A . H 5 HOH 15 175 15 HOH HOH A . H 5 HOH 16 176 16 HOH HOH A . H 5 HOH 17 177 18 HOH HOH A . H 5 HOH 18 178 19 HOH HOH A . H 5 HOH 19 179 20 HOH HOH A . H 5 HOH 20 180 21 HOH HOH A . H 5 HOH 21 181 22 HOH HOH A . H 5 HOH 22 182 23 HOH HOH A . H 5 HOH 23 183 24 HOH HOH A . H 5 HOH 24 184 25 HOH HOH A . H 5 HOH 25 185 26 HOH HOH A . H 5 HOH 26 186 28 HOH HOH A . H 5 HOH 27 187 29 HOH HOH A . H 5 HOH 28 188 30 HOH HOH A . H 5 HOH 29 189 32 HOH HOH A . H 5 HOH 30 190 33 HOH HOH A . H 5 HOH 31 191 34 HOH HOH A . H 5 HOH 32 192 35 HOH HOH A . H 5 HOH 33 193 36 HOH HOH A . H 5 HOH 34 194 37 HOH HOH A . H 5 HOH 35 195 38 HOH HOH A . H 5 HOH 36 196 41 HOH HOH A . H 5 HOH 37 197 42 HOH HOH A . H 5 HOH 38 198 44 HOH HOH A . H 5 HOH 39 199 45 HOH HOH A . H 5 HOH 40 200 47 HOH HOH A . H 5 HOH 41 201 48 HOH HOH A . H 5 HOH 42 202 49 HOH HOH A . H 5 HOH 43 203 50 HOH HOH A . H 5 HOH 44 204 51 HOH HOH A . H 5 HOH 45 205 52 HOH HOH A . H 5 HOH 46 206 53 HOH HOH A . H 5 HOH 47 207 54 HOH HOH A . H 5 HOH 48 208 55 HOH HOH A . H 5 HOH 49 209 56 HOH HOH A . H 5 HOH 50 210 57 HOH HOH A . H 5 HOH 51 211 58 HOH HOH A . H 5 HOH 52 212 59 HOH HOH A . H 5 HOH 53 213 60 HOH HOH A . H 5 HOH 54 214 61 HOH HOH A . H 5 HOH 55 215 63 HOH HOH A . H 5 HOH 56 216 64 HOH HOH A . H 5 HOH 57 217 65 HOH HOH A . H 5 HOH 58 218 66 HOH HOH A . H 5 HOH 59 219 67 HOH HOH A . H 5 HOH 60 220 68 HOH HOH A . H 5 HOH 61 221 69 HOH HOH A . H 5 HOH 62 222 70 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B U 20 ? "C5'" ? A U 20 "C5'" 2 1 Y 1 B U 20 ? "C4'" ? A U 20 "C4'" 3 1 Y 1 B U 20 ? "O4'" ? A U 20 "O4'" 4 1 Y 1 B U 20 ? "C3'" ? A U 20 "C3'" 5 1 Y 1 B U 20 ? "O3'" ? A U 20 "O3'" 6 1 Y 1 B U 20 ? "C2'" ? A U 20 "C2'" 7 1 Y 1 B U 20 ? "O2'" ? A U 20 "O2'" 8 1 Y 1 B U 20 ? "C1'" ? A U 20 "C1'" 9 1 Y 1 B U 20 ? N1 ? A U 20 N1 10 1 Y 1 B U 20 ? C2 ? A U 20 C2 11 1 Y 1 B U 20 ? O2 ? A U 20 O2 12 1 Y 1 B U 20 ? N3 ? A U 20 N3 13 1 Y 1 B U 20 ? C4 ? A U 20 C4 14 1 Y 1 B U 20 ? O4 ? A U 20 O4 15 1 Y 1 B U 20 ? C5 ? A U 20 C5 16 1 Y 1 B U 20 ? C6 ? A U 20 C6 17 1 Y 1 C U 20 ? "C5'" ? B U 20 "C5'" 18 1 Y 1 C U 20 ? "C4'" ? B U 20 "C4'" 19 1 Y 1 C U 20 ? "O4'" ? B U 20 "O4'" 20 1 Y 1 C U 20 ? "C3'" ? B U 20 "C3'" 21 1 Y 1 C U 20 ? "O3'" ? B U 20 "O3'" 22 1 Y 1 C U 20 ? "C2'" ? B U 20 "C2'" 23 1 Y 1 C U 20 ? "O2'" ? B U 20 "O2'" 24 1 Y 1 C U 20 ? "C1'" ? B U 20 "C1'" 25 1 Y 1 C U 20 ? N1 ? B U 20 N1 26 1 Y 1 C U 20 ? C2 ? B U 20 C2 27 1 Y 1 C U 20 ? O2 ? B U 20 O2 28 1 Y 1 C U 20 ? N3 ? B U 20 N3 29 1 Y 1 C U 20 ? C4 ? B U 20 C4 30 1 Y 1 C U 20 ? O4 ? B U 20 O4 31 1 Y 1 C U 20 ? C5 ? B U 20 C5 32 1 Y 1 C U 20 ? C6 ? B U 20 C6 33 1 Y 1 A HIS 25 ? CG ? C HIS 3 CG 34 1 Y 1 A HIS 25 ? ND1 ? C HIS 3 ND1 35 1 Y 1 A HIS 25 ? CD2 ? C HIS 3 CD2 36 1 Y 1 A HIS 25 ? CE1 ? C HIS 3 CE1 37 1 Y 1 A HIS 25 ? NE2 ? C HIS 3 NE2 38 1 Y 1 A ASP 54 ? CG ? C ASP 32 CG 39 1 Y 1 A ASP 54 ? OD1 ? C ASP 32 OD1 40 1 Y 1 A ASP 54 ? OD2 ? C ASP 32 OD2 41 1 Y 1 A GLU 80 ? CG ? C GLU 58 CG 42 1 Y 1 A GLU 80 ? CD ? C GLU 58 CD 43 1 Y 1 A GLU 80 ? OE1 ? C GLU 58 OE1 44 1 Y 1 A GLU 80 ? OE2 ? C GLU 58 OE2 45 1 Y 1 A PHE 105 ? CG ? C PHE 83 CG 46 1 Y 1 A PHE 105 ? CD1 ? C PHE 83 CD1 47 1 Y 1 A PHE 105 ? CD2 ? C PHE 83 CD2 48 1 Y 1 A PHE 105 ? CE1 ? C PHE 83 CE1 49 1 Y 1 A PHE 105 ? CE2 ? C PHE 83 CE2 50 1 Y 1 A PHE 105 ? CZ ? C PHE 83 CZ 51 1 Y 1 A GLN 131 ? CG ? C GLN 109 CG 52 1 Y 1 A GLN 131 ? CD ? C GLN 109 CD 53 1 Y 1 A GLN 131 ? OE1 ? C GLN 109 OE1 54 1 Y 1 A GLN 131 ? NE2 ? C GLN 109 NE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing 1.1 ? 4 # _cell.entry_id 1R9F _cell.length_a 91.249 _cell.length_b 91.249 _cell.length_c 148.630 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R9F _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # _exptl.entry_id 1R9F _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_percent_sol 39.86 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.50 _exptl_crystal_grow.pdbx_details 'ammonium sulfate, potassium chloride, HEPES-NaOH, dithiothreitol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 7.50' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'ammonium sulfate' ? ? ? 1 2 1 'potassium chloride' ? ? ? 1 3 1 HEPES-NaOH ? ? ? 1 4 1 dithiothreitol ? ? ? 1 5 1 H2O ? ? ? 1 6 2 'ammonium sulfate' ? ? ? 1 7 2 'potassium chloride' ? ? ? 1 8 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2003-07-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DIAMOND (111) DOUBLE-CRYSTAL MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9791 1.0 2 0.9789 1.0 3 0.9562 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9791,0.9789,0.9562 # _reflns.entry_id 1R9F _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.850 _reflns.number_obs 39408 _reflns.number_all ? _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 44.8000 _reflns.B_iso_Wilson_estimate 21.80 _reflns.pdbx_redundancy 9.500 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.92 _reflns_shell.percent_possible_all 93.2 _reflns_shell.Rmerge_I_obs 0.725 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.000 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1R9F _refine.ls_number_reflns_obs 36309 _refine.ls_number_reflns_all 36309 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF 0.0000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 14.86 _refine.ls_d_res_high 1.85 _refine.ls_percent_reflns_obs 92.3 _refine.ls_R_factor_obs 0.212 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.212 _refine.ls_R_factor_R_free 0.23 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 1772 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 46.40 _refine.aniso_B[1][1] 5.46000 _refine.aniso_B[2][2] 5.46000 _refine.aniso_B[3][3] -10.91000 _refine.aniso_B[1][2] 4.19000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.35 _refine.solvent_model_param_bsol 44.85 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1R9F _refine_analyze.Luzzati_coordinate_error_obs 0.24 _refine_analyze.Luzzati_sigma_a_obs 0.27 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.29 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 972 _refine_hist.pdbx_number_atoms_nucleic_acid 810 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 70 _refine_hist.number_atoms_total 1862 _refine_hist.d_res_high 1.85 _refine_hist.d_res_low 14.86 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.004 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 0.90 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 16.30 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.02 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.420 1.500 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.210 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.110 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.150 2.500 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.86 _refine_ls_shell.d_res_low 1.97 _refine_ls_shell.number_reflns_R_work 4623 _refine_ls_shell.R_factor_R_work 0.324 _refine_ls_shell.percent_reflns_obs 74.20 _refine_ls_shell.R_factor_R_free 0.355 _refine_ls_shell.R_factor_R_free_error 0.024 _refine_ls_shell.percent_reflns_R_free 4.50 _refine_ls_shell.number_reflns_R_free 220 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1R9F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1R9F _struct.title 'Crystal structure of p19 complexed with 19-bp small interfering RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1R9F _struct_keywords.pdbx_keywords 'Viral protein/RNA' _struct_keywords.text 'Protein-RNA complex, Dimer, double helix, Viral protein-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP VP19_TBSVC P11690 3 ;TSPFKLPDESPSWTEWRLHNDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFD QIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQELLQLAPIEVESNVSR ; 27 ? 2 PDB 1R9F 1R9F 1 ? ? ? 3 PDB 1R9F 1R9F 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1R9F A 5 ? 136 ? P11690 27 ? 158 ? 27 158 2 2 1R9F B 1 ? 21 ? 1R9F 1 ? 21 ? 1 21 3 3 1R9F C 1 ? 21 ? 1R9F 1 ? 21 ? 1 21 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1R9F GLY A 1 ? UNP P11690 ? ? 'cloning artifact' 23 1 1 1R9F SER A 2 ? UNP P11690 ? ? 'cloning artifact' 24 2 1 1R9F HIS A 3 ? UNP P11690 ? ? 'cloning artifact' 25 3 1 1R9F MSE A 4 ? UNP P11690 ? ? 'cloning artifact' 26 4 1 1R9F MSE A 114 ? UNP P11690 MET 136 'modified residue' 136 5 1 1R9F MSE A 122 ? UNP P11690 LEU 144 'engineered mutation' 144 6 1 1R9F MSE A 125 ? UNP P11690 LEU 147 'engineered mutation' 147 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_545 y+2/3,x-2/3,-z+1/3 -0.5000000000 0.8660254038 0.0000000000 91.2490000000 0.8660254038 0.5000000000 0.0000000000 -52.6826347133 0.0000000000 0.0000000000 -1.0000000000 49.5433333333 # _struct_biol.id 1 _struct_biol.details ;The biological assemble is a p19 dimer in complex with one siRNA duplex generated from the protein monomer and half RNA (19-bp duplex in half occupancy) in the asymmetric unit by the operation: Y+2/3,X-2/3,-Z+1/3. The 2-fold symmetry operation generates another overlapping half RNA in opposite orientation, compensating the lack of symmetry in RNA duplex itself. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER C 16 ? THR C 27 ? SER A 38 THR A 49 1 ? 12 HELX_P HELX_P2 2 THR C 57 ? GLY C 66 ? THR A 79 GLY A 88 1 ? 10 HELX_P HELX_P3 3 THR C 69 ? ARG C 79 ? THR A 91 ARG A 101 1 ? 11 HELX_P HELX_P4 4 THR C 107 ? GLN C 124 ? THR A 129 GLN A 146 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C HIS 3 C ? ? ? 1_555 C MSE 4 N ? ? A HIS 25 A MSE 26 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? C MSE 4 C ? ? ? 1_555 C THR 5 N ? ? A MSE 26 A THR 27 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? C GLU 113 C ? ? ? 1_555 C MSE 114 N ? ? A GLU 135 A MSE 136 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? C MSE 114 C ? ? ? 1_555 C ALA 115 N ? ? A MSE 136 A ALA 137 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale both ? C GLU 121 C ? ? ? 1_555 C MSE 122 N ? ? A GLU 143 A MSE 144 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale6 covale both ? C MSE 122 C ? ? ? 1_555 C LEU 123 N ? ? A MSE 144 A LEU 145 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale7 covale both ? C GLN 124 C ? ? ? 1_555 C MSE 125 N ? ? A GLN 146 A MSE 147 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale8 covale both ? C MSE 125 C ? ? ? 1_555 C ALA 126 N ? ? A MSE 147 A ALA 148 1_555 ? ? ? ? ? ? ? 1.329 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 19 N1 ? ? B C 1 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 19 O6 ? ? B C 1 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 19 N2 ? ? B C 1 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 18 N3 ? ? B G 2 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 18 O2 ? ? B G 2 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 18 N4 ? ? B G 2 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 B A 17 N1 ? ? B U 3 C A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 B A 17 N6 ? ? B U 3 C A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 B U 16 N3 ? ? B A 4 C U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 B U 16 O4 ? ? B A 4 C U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 15 N1 ? ? B C 5 C G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 15 O6 ? ? B C 5 C G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 15 N2 ? ? B C 5 C G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 14 N3 ? ? B G 6 C C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 14 O2 ? ? B G 6 C C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 14 N4 ? ? B G 6 C C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 13 N1 ? ? B C 7 C G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 13 O6 ? ? B C 7 C G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 13 N2 ? ? B C 7 C G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 12 N3 ? ? B G 8 C C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 12 O2 ? ? B G 8 C C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 12 N4 ? ? B G 8 C C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 11 N3 ? ? B G 9 C C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 11 O2 ? ? B G 9 C C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 11 N4 ? ? B G 9 C C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 10 N3 ? ? B A 10 C U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 10 O4 ? ? B A 10 C U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 11 N1 ? ? ? 1_555 B U 9 N3 ? ? B A 11 C U 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 11 N6 ? ? ? 1_555 B U 9 O4 ? ? B A 11 C U 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 8 N1 ? ? B U 12 C A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 8 N6 ? ? B U 12 C A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 13 N1 ? ? ? 1_555 B U 7 N3 ? ? B A 13 C U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 13 N6 ? ? ? 1_555 B U 7 O4 ? ? B A 13 C U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 14 N3 ? ? ? 1_555 B G 6 N1 ? ? B C 14 C G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 14 N4 ? ? ? 1_555 B G 6 O6 ? ? B C 14 C G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 14 O2 ? ? ? 1_555 B G 6 N2 ? ? B C 14 C G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 15 N3 ? ? ? 1_555 B A 5 N1 ? ? B U 15 C A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 15 O4 ? ? ? 1_555 B A 5 N6 ? ? B U 15 C A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 16 N3 ? ? ? 1_555 B A 4 N1 ? ? B U 16 C A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 16 O4 ? ? ? 1_555 B A 4 N6 ? ? B U 16 C A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 17 N3 ? ? ? 1_555 B G 3 N1 ? ? B C 17 C G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 17 N4 ? ? ? 1_555 B G 3 O6 ? ? B C 17 C G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 17 O2 ? ? ? 1_555 B G 3 N2 ? ? B C 17 C G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 18 N1 ? ? ? 1_555 B C 2 N3 ? ? B G 18 C C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 18 N2 ? ? ? 1_555 B C 2 O2 ? ? B G 18 C C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 18 O6 ? ? ? 1_555 B C 2 N4 ? ? B G 18 C C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A A 19 N1 ? ? ? 1_555 B U 1 N3 ? ? B A 19 C U 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 19 N6 ? ? ? 1_555 B U 1 O4 ? ? B A 19 C U 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE C 4 ? . . . . MSE A 26 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE C 114 ? . . . . MSE A 136 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE C 122 ? . . . . MSE A 144 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE C 125 ? . . . . MSE A 147 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL C 46 ? ARG C 53 ? VAL A 68 ARG A 75 A 2 GLY C 36 ? PHE C 43 ? GLY A 58 PHE A 65 A 3 GLY C 87 ? PHE C 94 ? GLY A 109 PHE A 116 A 4 VAL C 97 ? GLY C 104 ? VAL A 119 GLY A 126 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL C 46 ? O VAL A 68 N PHE C 43 ? N PHE A 65 A 2 3 N GLY C 42 ? N GLY A 64 O THR C 89 ? O THR A 111 A 3 4 N CYS C 88 ? N CYS A 110 O GLY C 103 ? O GLY A 125 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 159 ? 5 'BINDING SITE FOR RESIDUE SO4 A 159' AC2 Software A SO4 160 ? 5 'BINDING SITE FOR RESIDUE SO4 A 160' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 SER C 6 ? SER A 28 . ? 1_555 ? 2 AC1 5 PHE C 48 ? PHE A 70 . ? 1_555 ? 3 AC1 5 ARG C 50 ? ARG A 72 . ? 1_555 ? 4 AC1 5 HOH H . ? HOH A 168 . ? 1_555 ? 5 AC1 5 HOH H . ? HOH A 208 . ? 1_555 ? 6 AC2 5 SER C 16 ? SER A 38 . ? 1_555 ? 7 AC2 5 THR C 18 ? THR A 40 . ? 1_555 ? 8 AC2 5 HIS C 62 ? HIS A 84 . ? 5_555 ? 9 AC2 5 HOH H . ? HOH A 167 . ? 1_555 ? 10 AC2 5 HOH H . ? HOH A 174 . ? 1_555 ? # _pdbx_entry_details.entry_id 1R9F _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C MSE 4 A MSE 26 ? MET SELENOMETHIONINE 2 C MSE 114 A MSE 136 ? MET SELENOMETHIONINE 3 C MSE 122 A MSE 144 ? MET SELENOMETHIONINE 4 C MSE 125 A MSE 147 ? MET SELENOMETHIONINE # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id A _pdbx_struct_special_symmetry.auth_seq_id 10 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id A _pdbx_struct_special_symmetry.label_comp_id A _pdbx_struct_special_symmetry.label_seq_id 10 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B U 21 ? A U 21 2 1 Y 1 C U 21 ? B U 21 3 1 Y 1 A GLY 23 ? C GLY 1 4 1 Y 1 A SER 24 ? C SER 2 5 1 Y 1 A ASN 50 ? C ASN 28 6 1 Y 1 A SER 51 ? C SER 29 7 1 Y 1 A ASN 52 ? C ASN 30 8 1 Y 1 A PRO 149 ? C PRO 127 9 1 Y 1 A ILE 150 ? C ILE 128 10 1 Y 1 A GLU 151 ? C GLU 129 11 1 Y 1 A VAL 152 ? C VAL 130 12 1 Y 1 A GLU 153 ? C GLU 131 13 1 Y 1 A SER 154 ? C SER 132 14 1 Y 1 A ASN 155 ? C ASN 133 15 1 Y 1 A VAL 156 ? C VAL 134 16 1 Y 1 A SER 157 ? C SER 135 17 1 Y 1 A ARG 158 ? C ARG 136 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 HOH O O N N 268 HOH H1 H N N 269 HOH H2 H N N 270 ILE N N N N 271 ILE CA C N S 272 ILE C C N N 273 ILE O O N N 274 ILE CB C N S 275 ILE CG1 C N N 276 ILE CG2 C N N 277 ILE CD1 C N N 278 ILE OXT O N N 279 ILE H H N N 280 ILE H2 H N N 281 ILE HA H N N 282 ILE HB H N N 283 ILE HG12 H N N 284 ILE HG13 H N N 285 ILE HG21 H N N 286 ILE HG22 H N N 287 ILE HG23 H N N 288 ILE HD11 H N N 289 ILE HD12 H N N 290 ILE HD13 H N N 291 ILE HXT H N N 292 LEU N N N N 293 LEU CA C N S 294 LEU C C N N 295 LEU O O N N 296 LEU CB C N N 297 LEU CG C N N 298 LEU CD1 C N N 299 LEU CD2 C N N 300 LEU OXT O N N 301 LEU H H N N 302 LEU H2 H N N 303 LEU HA H N N 304 LEU HB2 H N N 305 LEU HB3 H N N 306 LEU HG H N N 307 LEU HD11 H N N 308 LEU HD12 H N N 309 LEU HD13 H N N 310 LEU HD21 H N N 311 LEU HD22 H N N 312 LEU HD23 H N N 313 LEU HXT H N N 314 LYS N N N N 315 LYS CA C N S 316 LYS C C N N 317 LYS O O N N 318 LYS CB C N N 319 LYS CG C N N 320 LYS CD C N N 321 LYS CE C N N 322 LYS NZ N N N 323 LYS OXT O N N 324 LYS H H N N 325 LYS H2 H N N 326 LYS HA H N N 327 LYS HB2 H N N 328 LYS HB3 H N N 329 LYS HG2 H N N 330 LYS HG3 H N N 331 LYS HD2 H N N 332 LYS HD3 H N N 333 LYS HE2 H N N 334 LYS HE3 H N N 335 LYS HZ1 H N N 336 LYS HZ2 H N N 337 LYS HZ3 H N N 338 LYS HXT H N N 339 MET N N N N 340 MET CA C N S 341 MET C C N N 342 MET O O N N 343 MET CB C N N 344 MET CG C N N 345 MET SD S N N 346 MET CE C N N 347 MET OXT O N N 348 MET H H N N 349 MET H2 H N N 350 MET HA H N N 351 MET HB2 H N N 352 MET HB3 H N N 353 MET HG2 H N N 354 MET HG3 H N N 355 MET HE1 H N N 356 MET HE2 H N N 357 MET HE3 H N N 358 MET HXT H N N 359 MSE N N N N 360 MSE CA C N S 361 MSE C C N N 362 MSE O O N N 363 MSE OXT O N N 364 MSE CB C N N 365 MSE CG C N N 366 MSE SE SE N N 367 MSE CE C N N 368 MSE H H N N 369 MSE H2 H N N 370 MSE HA H N N 371 MSE HXT H N N 372 MSE HB2 H N N 373 MSE HB3 H N N 374 MSE HG2 H N N 375 MSE HG3 H N N 376 MSE HE1 H N N 377 MSE HE2 H N N 378 MSE HE3 H N N 379 PHE N N N N 380 PHE CA C N S 381 PHE C C N N 382 PHE O O N N 383 PHE CB C N N 384 PHE CG C Y N 385 PHE CD1 C Y N 386 PHE CD2 C Y N 387 PHE CE1 C Y N 388 PHE CE2 C Y N 389 PHE CZ C Y N 390 PHE OXT O N N 391 PHE H H N N 392 PHE H2 H N N 393 PHE HA H N N 394 PHE HB2 H N N 395 PHE HB3 H N N 396 PHE HD1 H N N 397 PHE HD2 H N N 398 PHE HE1 H N N 399 PHE HE2 H N N 400 PHE HZ H N N 401 PHE HXT H N N 402 PRO N N N N 403 PRO CA C N S 404 PRO C C N N 405 PRO O O N N 406 PRO CB C N N 407 PRO CG C N N 408 PRO CD C N N 409 PRO OXT O N N 410 PRO H H N N 411 PRO HA H N N 412 PRO HB2 H N N 413 PRO HB3 H N N 414 PRO HG2 H N N 415 PRO HG3 H N N 416 PRO HD2 H N N 417 PRO HD3 H N N 418 PRO HXT H N N 419 SER N N N N 420 SER CA C N S 421 SER C C N N 422 SER O O N N 423 SER CB C N N 424 SER OG O N N 425 SER OXT O N N 426 SER H H N N 427 SER H2 H N N 428 SER HA H N N 429 SER HB2 H N N 430 SER HB3 H N N 431 SER HG H N N 432 SER HXT H N N 433 SO4 S S N N 434 SO4 O1 O N N 435 SO4 O2 O N N 436 SO4 O3 O N N 437 SO4 O4 O N N 438 THR N N N N 439 THR CA C N S 440 THR C C N N 441 THR O O N N 442 THR CB C N R 443 THR OG1 O N N 444 THR CG2 C N N 445 THR OXT O N N 446 THR H H N N 447 THR H2 H N N 448 THR HA H N N 449 THR HB H N N 450 THR HG1 H N N 451 THR HG21 H N N 452 THR HG22 H N N 453 THR HG23 H N N 454 THR HXT H N N 455 TRP N N N N 456 TRP CA C N S 457 TRP C C N N 458 TRP O O N N 459 TRP CB C N N 460 TRP CG C Y N 461 TRP CD1 C Y N 462 TRP CD2 C Y N 463 TRP NE1 N Y N 464 TRP CE2 C Y N 465 TRP CE3 C Y N 466 TRP CZ2 C Y N 467 TRP CZ3 C Y N 468 TRP CH2 C Y N 469 TRP OXT O N N 470 TRP H H N N 471 TRP H2 H N N 472 TRP HA H N N 473 TRP HB2 H N N 474 TRP HB3 H N N 475 TRP HD1 H N N 476 TRP HE1 H N N 477 TRP HE3 H N N 478 TRP HZ2 H N N 479 TRP HZ3 H N N 480 TRP HH2 H N N 481 TRP HXT H N N 482 TYR N N N N 483 TYR CA C N S 484 TYR C C N N 485 TYR O O N N 486 TYR CB C N N 487 TYR CG C Y N 488 TYR CD1 C Y N 489 TYR CD2 C Y N 490 TYR CE1 C Y N 491 TYR CE2 C Y N 492 TYR CZ C Y N 493 TYR OH O N N 494 TYR OXT O N N 495 TYR H H N N 496 TYR H2 H N N 497 TYR HA H N N 498 TYR HB2 H N N 499 TYR HB3 H N N 500 TYR HD1 H N N 501 TYR HD2 H N N 502 TYR HE1 H N N 503 TYR HE2 H N N 504 TYR HH H N N 505 TYR HXT H N N 506 U OP3 O N N 507 U P P N N 508 U OP1 O N N 509 U OP2 O N N 510 U "O5'" O N N 511 U "C5'" C N N 512 U "C4'" C N R 513 U "O4'" O N N 514 U "C3'" C N S 515 U "O3'" O N N 516 U "C2'" C N R 517 U "O2'" O N N 518 U "C1'" C N R 519 U N1 N N N 520 U C2 C N N 521 U O2 O N N 522 U N3 N N N 523 U C4 C N N 524 U O4 O N N 525 U C5 C N N 526 U C6 C N N 527 U HOP3 H N N 528 U HOP2 H N N 529 U "H5'" H N N 530 U "H5''" H N N 531 U "H4'" H N N 532 U "H3'" H N N 533 U "HO3'" H N N 534 U "H2'" H N N 535 U "HO2'" H N N 536 U "H1'" H N N 537 U H3 H N N 538 U H5 H N N 539 U H6 H N N 540 VAL N N N N 541 VAL CA C N S 542 VAL C C N N 543 VAL O O N N 544 VAL CB C N N 545 VAL CG1 C N N 546 VAL CG2 C N N 547 VAL OXT O N N 548 VAL H H N N 549 VAL H2 H N N 550 VAL HA H N N 551 VAL HB H N N 552 VAL HG11 H N N 553 VAL HG12 H N N 554 VAL HG13 H N N 555 VAL HG21 H N N 556 VAL HG22 H N N 557 VAL HG23 H N N 558 VAL HXT H N N 559 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 MSE N CA sing N N 352 MSE N H sing N N 353 MSE N H2 sing N N 354 MSE CA C sing N N 355 MSE CA CB sing N N 356 MSE CA HA sing N N 357 MSE C O doub N N 358 MSE C OXT sing N N 359 MSE OXT HXT sing N N 360 MSE CB CG sing N N 361 MSE CB HB2 sing N N 362 MSE CB HB3 sing N N 363 MSE CG SE sing N N 364 MSE CG HG2 sing N N 365 MSE CG HG3 sing N N 366 MSE SE CE sing N N 367 MSE CE HE1 sing N N 368 MSE CE HE2 sing N N 369 MSE CE HE3 sing N N 370 PHE N CA sing N N 371 PHE N H sing N N 372 PHE N H2 sing N N 373 PHE CA C sing N N 374 PHE CA CB sing N N 375 PHE CA HA sing N N 376 PHE C O doub N N 377 PHE C OXT sing N N 378 PHE CB CG sing N N 379 PHE CB HB2 sing N N 380 PHE CB HB3 sing N N 381 PHE CG CD1 doub Y N 382 PHE CG CD2 sing Y N 383 PHE CD1 CE1 sing Y N 384 PHE CD1 HD1 sing N N 385 PHE CD2 CE2 doub Y N 386 PHE CD2 HD2 sing N N 387 PHE CE1 CZ doub Y N 388 PHE CE1 HE1 sing N N 389 PHE CE2 CZ sing Y N 390 PHE CE2 HE2 sing N N 391 PHE CZ HZ sing N N 392 PHE OXT HXT sing N N 393 PRO N CA sing N N 394 PRO N CD sing N N 395 PRO N H sing N N 396 PRO CA C sing N N 397 PRO CA CB sing N N 398 PRO CA HA sing N N 399 PRO C O doub N N 400 PRO C OXT sing N N 401 PRO CB CG sing N N 402 PRO CB HB2 sing N N 403 PRO CB HB3 sing N N 404 PRO CG CD sing N N 405 PRO CG HG2 sing N N 406 PRO CG HG3 sing N N 407 PRO CD HD2 sing N N 408 PRO CD HD3 sing N N 409 PRO OXT HXT sing N N 410 SER N CA sing N N 411 SER N H sing N N 412 SER N H2 sing N N 413 SER CA C sing N N 414 SER CA CB sing N N 415 SER CA HA sing N N 416 SER C O doub N N 417 SER C OXT sing N N 418 SER CB OG sing N N 419 SER CB HB2 sing N N 420 SER CB HB3 sing N N 421 SER OG HG sing N N 422 SER OXT HXT sing N N 423 SO4 S O1 doub N N 424 SO4 S O2 doub N N 425 SO4 S O3 sing N N 426 SO4 S O4 sing N N 427 THR N CA sing N N 428 THR N H sing N N 429 THR N H2 sing N N 430 THR CA C sing N N 431 THR CA CB sing N N 432 THR CA HA sing N N 433 THR C O doub N N 434 THR C OXT sing N N 435 THR CB OG1 sing N N 436 THR CB CG2 sing N N 437 THR CB HB sing N N 438 THR OG1 HG1 sing N N 439 THR CG2 HG21 sing N N 440 THR CG2 HG22 sing N N 441 THR CG2 HG23 sing N N 442 THR OXT HXT sing N N 443 TRP N CA sing N N 444 TRP N H sing N N 445 TRP N H2 sing N N 446 TRP CA C sing N N 447 TRP CA CB sing N N 448 TRP CA HA sing N N 449 TRP C O doub N N 450 TRP C OXT sing N N 451 TRP CB CG sing N N 452 TRP CB HB2 sing N N 453 TRP CB HB3 sing N N 454 TRP CG CD1 doub Y N 455 TRP CG CD2 sing Y N 456 TRP CD1 NE1 sing Y N 457 TRP CD1 HD1 sing N N 458 TRP CD2 CE2 doub Y N 459 TRP CD2 CE3 sing Y N 460 TRP NE1 CE2 sing Y N 461 TRP NE1 HE1 sing N N 462 TRP CE2 CZ2 sing Y N 463 TRP CE3 CZ3 doub Y N 464 TRP CE3 HE3 sing N N 465 TRP CZ2 CH2 doub Y N 466 TRP CZ2 HZ2 sing N N 467 TRP CZ3 CH2 sing Y N 468 TRP CZ3 HZ3 sing N N 469 TRP CH2 HH2 sing N N 470 TRP OXT HXT sing N N 471 TYR N CA sing N N 472 TYR N H sing N N 473 TYR N H2 sing N N 474 TYR CA C sing N N 475 TYR CA CB sing N N 476 TYR CA HA sing N N 477 TYR C O doub N N 478 TYR C OXT sing N N 479 TYR CB CG sing N N 480 TYR CB HB2 sing N N 481 TYR CB HB3 sing N N 482 TYR CG CD1 doub Y N 483 TYR CG CD2 sing Y N 484 TYR CD1 CE1 sing Y N 485 TYR CD1 HD1 sing N N 486 TYR CD2 CE2 doub Y N 487 TYR CD2 HD2 sing N N 488 TYR CE1 CZ doub Y N 489 TYR CE1 HE1 sing N N 490 TYR CE2 CZ sing Y N 491 TYR CE2 HE2 sing N N 492 TYR CZ OH sing N N 493 TYR OH HH sing N N 494 TYR OXT HXT sing N N 495 U OP3 P sing N N 496 U OP3 HOP3 sing N N 497 U P OP1 doub N N 498 U P OP2 sing N N 499 U P "O5'" sing N N 500 U OP2 HOP2 sing N N 501 U "O5'" "C5'" sing N N 502 U "C5'" "C4'" sing N N 503 U "C5'" "H5'" sing N N 504 U "C5'" "H5''" sing N N 505 U "C4'" "O4'" sing N N 506 U "C4'" "C3'" sing N N 507 U "C4'" "H4'" sing N N 508 U "O4'" "C1'" sing N N 509 U "C3'" "O3'" sing N N 510 U "C3'" "C2'" sing N N 511 U "C3'" "H3'" sing N N 512 U "O3'" "HO3'" sing N N 513 U "C2'" "O2'" sing N N 514 U "C2'" "C1'" sing N N 515 U "C2'" "H2'" sing N N 516 U "O2'" "HO2'" sing N N 517 U "C1'" N1 sing N N 518 U "C1'" "H1'" sing N N 519 U N1 C2 sing N N 520 U N1 C6 sing N N 521 U C2 O2 doub N N 522 U C2 N3 sing N N 523 U N3 C4 sing N N 524 U N3 H3 sing N N 525 U C4 O4 doub N N 526 U C4 C5 sing N N 527 U C5 C6 doub N N 528 U C5 H5 sing N N 529 U C6 H6 sing N N 530 VAL N CA sing N N 531 VAL N H sing N N 532 VAL N H2 sing N N 533 VAL CA C sing N N 534 VAL CA CB sing N N 535 VAL CA HA sing N N 536 VAL C O doub N N 537 VAL C OXT sing N N 538 VAL CB CG1 sing N N 539 VAL CB CG2 sing N N 540 VAL CB HB sing N N 541 VAL CG1 HG11 sing N N 542 VAL CG1 HG12 sing N N 543 VAL CG1 HG13 sing N N 544 VAL CG2 HG21 sing N N 545 VAL CG2 HG22 sing N N 546 VAL CG2 HG23 sing N N 547 VAL OXT HXT sing N N 548 # _ndb_struct_conf_na.entry_id 1R9F _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 19 1_555 0.066 -0.086 0.082 5.457 -6.116 -2.394 1 B_C1:G19_C B 1 ? C 19 ? 19 1 1 A G 2 1_555 B C 18 1_555 -0.239 -0.084 -0.100 -5.597 -8.483 2.281 2 B_G2:C18_C B 2 ? C 18 ? 19 1 1 A U 3 1_555 B A 17 1_555 -0.030 -0.105 0.281 -6.762 1.225 7.195 3 B_U3:A17_C B 3 ? C 17 ? 20 1 1 A A 4 1_555 B U 16 1_555 0.033 -0.092 -0.274 5.047 -7.830 3.058 4 B_A4:U16_C B 4 ? C 16 ? 20 1 1 A C 5 1_555 B G 15 1_555 0.170 -0.026 -0.610 10.192 -12.108 3.855 5 B_C5:G15_C B 5 ? C 15 ? 19 1 1 A G 6 1_555 B C 14 1_555 -0.199 -0.049 -0.200 -6.134 -13.726 1.722 6 B_G6:C14_C B 6 ? C 14 ? 19 1 1 A C 7 1_555 B G 13 1_555 0.174 -0.070 -0.016 6.740 -10.400 1.097 7 B_C7:G13_C B 7 ? C 13 ? 19 1 1 A G 8 1_555 B C 12 1_555 -0.081 -0.094 -0.488 1.369 -7.596 -0.094 8 B_G8:C12_C B 8 ? C 12 ? 19 1 1 A G 9 1_555 B C 11 1_555 -0.232 -0.041 -0.233 -0.223 -10.230 2.986 9 B_G9:C11_C B 9 ? C 11 ? 19 1 1 A A 10 1_555 B U 10 1_555 0.024 -0.140 0.300 1.069 -13.918 3.045 10 B_A10:U10_C B 10 ? C 10 ? 20 1 1 A A 11 1_555 B U 9 1_555 -0.056 -0.184 -0.015 5.075 -11.956 5.863 11 B_A11:U9_C B 11 ? C 9 ? 20 1 1 A U 12 1_555 B A 8 1_555 -0.066 -0.146 0.509 5.054 -8.394 0.937 12 B_U12:A8_C B 12 ? C 8 ? 20 1 1 A A 13 1_555 B U 7 1_555 0.009 -0.097 0.080 3.034 -13.191 3.590 13 B_A13:U7_C B 13 ? C 7 ? 20 1 1 A C 14 1_555 B G 6 1_555 0.194 -0.033 0.144 3.689 -9.158 1.096 14 B_C14:G6_C B 14 ? C 6 ? 19 1 1 A U 15 1_555 B A 5 1_555 -0.019 -0.050 -0.013 6.312 -11.918 4.821 15 B_U15:A5_C B 15 ? C 5 ? 20 1 1 A U 16 1_555 B A 4 1_555 -0.016 -0.081 -0.102 4.769 -8.047 4.348 16 B_U16:A4_C B 16 ? C 4 ? 20 1 1 A C 17 1_555 B G 3 1_555 0.181 -0.049 -0.339 3.867 -8.897 1.989 17 B_C17:G3_C B 17 ? C 3 ? 19 1 1 A G 18 1_555 B C 2 1_555 -0.055 -0.067 0.250 -8.086 -5.846 0.574 18 B_G18:C2_C B 18 ? C 2 ? 19 1 1 A A 19 1_555 B U 1 1_555 0.079 -0.081 -0.365 1.150 2.002 -1.833 19 B_A19:U1_C B 19 ? C 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 19 1_555 A G 2 1_555 B C 18 1_555 0.752 -2.141 3.462 2.182 4.669 30.644 -4.910 -0.978 3.153 8.757 -4.092 31.064 1 BB_C1G2:C18G19_CC B 1 ? C 19 ? B 2 ? C 18 ? 1 A G 2 1_555 B C 18 1_555 A U 3 1_555 B A 17 1_555 -0.361 -1.789 3.507 -3.887 -0.117 29.183 -3.493 -0.187 3.531 -0.230 7.671 29.436 2 BB_G2U3:A17C18_CC B 2 ? C 18 ? B 3 ? C 17 ? 1 A U 3 1_555 B A 17 1_555 A A 4 1_555 B U 16 1_555 -0.588 -1.310 2.856 3.771 15.234 28.327 -4.428 1.570 1.840 28.528 -7.061 32.306 3 BB_U3A4:U16A17_CC B 3 ? C 17 ? B 4 ? C 16 ? 1 A A 4 1_555 B U 16 1_555 A C 5 1_555 B G 15 1_555 0.257 -1.900 3.304 1.472 9.235 26.422 -5.932 -0.211 2.519 19.445 -3.099 28.000 4 BB_A4C5:G15U16_CC B 4 ? C 16 ? B 5 ? C 15 ? 1 A C 5 1_555 B G 15 1_555 A G 6 1_555 B C 14 1_555 -0.464 -1.472 3.866 -2.874 12.540 29.038 -5.238 0.266 3.019 23.602 5.410 31.704 5 BB_C5G6:C14G15_CC B 5 ? C 15 ? B 6 ? C 14 ? 1 A G 6 1_555 B C 14 1_555 A C 7 1_555 B G 13 1_555 -0.027 -1.126 3.030 -1.173 3.224 33.450 -2.427 -0.127 2.911 5.583 2.032 33.621 6 BB_G6C7:G13C14_CC B 6 ? C 14 ? B 7 ? C 13 ? 1 A C 7 1_555 B G 13 1_555 A G 8 1_555 B C 12 1_555 0.129 -1.339 3.270 3.581 15.464 29.929 -4.581 0.305 2.320 27.633 -6.400 33.793 7 BB_C7G8:C12G13_CC B 7 ? C 13 ? B 8 ? C 12 ? 1 A G 8 1_555 B C 12 1_555 A G 9 1_555 B C 11 1_555 0.540 -1.456 3.000 -1.671 13.220 29.821 -4.490 -1.202 2.146 24.224 3.061 32.601 8 BB_G8G9:C11C12_CC B 8 ? C 12 ? B 9 ? C 11 ? 1 A G 9 1_555 B C 11 1_555 A A 10 1_555 B U 10 1_555 0.079 -1.665 3.028 -5.190 5.768 29.581 -4.162 -1.053 2.613 11.060 9.950 30.560 9 BB_G9A10:U10C11_CC B 9 ? C 11 ? B 10 ? C 10 ? 1 A A 10 1_555 B U 10 1_555 A A 11 1_555 B U 9 1_555 -0.090 -1.344 3.521 -0.495 -4.006 33.526 -1.600 0.067 3.653 -6.913 0.854 33.762 10 BB_A10A11:U9U10_CC B 10 ? C 10 ? B 11 ? C 9 ? 1 A A 11 1_555 B U 9 1_555 A U 12 1_555 B A 8 1_555 -0.228 -1.351 3.494 -3.782 5.782 29.380 -3.813 -0.358 3.180 11.206 7.330 30.164 11 BB_A11U12:A8U9_CC B 11 ? C 9 ? B 12 ? C 8 ? 1 A U 12 1_555 B A 8 1_555 A A 13 1_555 B U 7 1_555 -0.198 -1.521 3.104 2.382 13.284 31.713 -4.352 0.655 2.282 23.047 -4.133 34.398 12 BB_U12A13:U7A8_CC B 12 ? C 8 ? B 13 ? C 7 ? 1 A A 13 1_555 B U 7 1_555 A C 14 1_555 B G 6 1_555 -0.248 -1.538 3.230 -2.083 8.580 31.443 -4.123 0.105 2.737 15.454 3.752 32.629 13 BB_A13C14:G6U7_CC B 13 ? C 7 ? B 14 ? C 6 ? 1 A C 14 1_555 B G 6 1_555 A U 15 1_555 B A 5 1_555 0.627 -1.926 3.047 3.247 8.566 28.847 -5.185 -0.637 2.441 16.672 -6.319 30.238 14 BB_C14U15:A5G6_CC B 14 ? C 6 ? B 15 ? C 5 ? 1 A U 15 1_555 B A 5 1_555 A U 16 1_555 B A 4 1_555 0.328 -1.550 3.252 1.618 6.623 29.611 -4.217 -0.318 2.859 12.747 -3.113 30.368 15 BB_U15U16:A4A5_CC B 15 ? C 5 ? B 16 ? C 4 ? 1 A U 16 1_555 B A 4 1_555 A C 17 1_555 B G 3 1_555 -0.372 -1.725 3.233 -0.131 4.861 30.621 -4.116 0.672 2.932 9.131 0.246 30.996 16 BB_U16C17:G3A4_CC B 16 ? C 4 ? B 17 ? C 3 ? 1 A C 17 1_555 B G 3 1_555 A G 18 1_555 B C 2 1_555 0.028 -2.145 3.401 -4.202 13.089 28.955 -6.034 -0.738 2.223 24.510 7.868 31.989 17 BB_C17G18:C2G3_CC B 17 ? C 3 ? B 18 ? C 2 ? 1 A G 18 1_555 B C 2 1_555 A A 19 1_555 B U 1 1_555 -0.070 -2.164 3.132 7.831 8.357 31.439 -4.974 1.255 2.408 14.821 -13.888 33.410 18 BB_G18A19:U1C2_CC B 18 ? C 2 ? B 19 ? C 1 ? # _atom_sites.entry_id 1R9F _atom_sites.fract_transf_matrix[1][1] 0.010959 _atom_sites.fract_transf_matrix[1][2] 0.006327 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012654 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006728 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE # loop_