HEADER OXIDOREDUCTASE 30-OCT-03 1R9O TITLE CRYSTAL STRUCTURE OF P4502C9 WITH FLURBIPROFEN BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 2C9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: CYPIIC9, P450 PB-1, P450 MP-4, S-MEPHENYTOIN 4-HYDROXYLASE, COMPND 6 P-450MP; COMPND 7 EC: 1.14.14.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CYP2C9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5A; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCWORI KEYWDS P450, MONOOXYGENASE, DRUG METABOLIZING ENZYME, OXIDOREDUCTASE, HEME EXPDTA X-RAY DIFFRACTION AUTHOR M.R.WESTER,J.K.YANO,G.A.SCHOCH,K.J.GRIFFIN,C.D.STOUT,E.F.JOHNSON REVDAT 6 23-AUG-23 1R9O 1 REMARK REVDAT 5 27-OCT-21 1R9O 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1R9O 1 VERSN REVDAT 3 24-FEB-09 1R9O 1 VERSN REVDAT 2 31-AUG-04 1R9O 1 JRNL REVDAT 1 15-JUN-04 1R9O 0 JRNL AUTH M.R.WESTER,J.K.YANO,G.A.SCHOCH,C.YANG,K.J.GRIFFIN,C.D.STOUT, JRNL AUTH 2 E.F.JOHNSON JRNL TITL THE STRUCTURE OF HUMAN CYTOCHROME P450 2C9 COMPLEXED WITH JRNL TITL 2 FLURBIPROFEN AT 2.0 A RESOLUTION JRNL REF J.BIOL.CHEM. V. 279 35630 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15181000 JRNL DOI 10.1074/JBC.M405427200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1772 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 296 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.052 REMARK 3 BOND ANGLES (DEGREES) : 2.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.910 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R9O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020610. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI (311) REMARK 200 OPTICS : FLAT MIRROR (VERTICLE FOCUSING), REMARK 200 SINGLE CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35418 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.08200 REMARK 200 R SYM FOR SHELL (I) : 0.40600 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1N6B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, HEPES, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.52350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.28300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.49333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 45.52350 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 26.28300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.49333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 45.52350 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 26.28300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.49333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.56601 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 112.98667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 52.56601 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 112.98667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 52.56601 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 112.98667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 18 REMARK 465 ALA A 19 REMARK 465 LYS A 20 REMARK 465 LYS A 21 REMARK 465 THR A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 GLY A 25 REMARK 465 VAL A 38 REMARK 465 ILE A 39 REMARK 465 GLY A 40 REMARK 465 ASN A 41 REMARK 465 ILE A 42 REMARK 465 GLN A 214 REMARK 465 ILE A 215 REMARK 465 CYS A 216 REMARK 465 ASN A 217 REMARK 465 ASN A 218 REMARK 465 PHE A 219 REMARK 465 SER A 220 REMARK 465 HIS A 493 REMARK 465 HIS A 494 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 72 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 35 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 132 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 PHE A 183 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 ARG A 433 NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 433 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 35 154.87 -23.43 REMARK 500 LEU A 36 -7.01 75.76 REMARK 500 ALA A 86 -71.10 -78.44 REMARK 500 ILE A 99 -44.53 -29.35 REMARK 500 PHE A 100 168.39 88.07 REMARK 500 PRO A 101 12.48 -56.91 REMARK 500 LEU A 102 -177.83 177.41 REMARK 500 GLU A 104 85.44 56.27 REMARK 500 ASN A 107 64.26 63.54 REMARK 500 ASN A 133 37.15 70.10 REMARK 500 ILE A 223 -148.05 -58.17 REMARK 500 ASP A 224 -5.47 -141.57 REMARK 500 PHE A 226 -47.08 -163.09 REMARK 500 PRO A 227 -88.81 -6.19 REMARK 500 THR A 229 -51.10 -139.96 REMARK 500 MET A 257 -8.57 -59.75 REMARK 500 ASN A 259 41.93 -141.36 REMARK 500 ASN A 277 41.66 -152.04 REMARK 500 ASN A 334 -76.91 -87.14 REMARK 500 SER A 365 -139.25 49.62 REMARK 500 ARG A 377 -137.73 58.06 REMARK 500 SER A 429 -153.13 80.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 435 SG REMARK 620 2 HEM A 500 NA 98.3 REMARK 620 3 HEM A 500 NB 89.6 87.1 REMARK 620 4 HEM A 500 NC 82.8 176.2 89.3 REMARK 620 5 HEM A 500 ND 96.7 92.4 173.7 91.1 REMARK 620 6 HOH A 600 O 168.1 85.6 79.3 92.6 94.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N6B RELATED DB: PDB REMARK 900 MICROSOMAL CYTOCHROME P450 2C5/3LVDH COMPLEX WITH A DIMETHYL REMARK 900 DERIVATIVE OF SULFAPHENAZOLE REMARK 900 RELATED ID: 1OG5 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN CYTOCHROME P450 CYP2C9 REMARK 900 RELATED ID: 1PO5 RELATED DB: PDB REMARK 900 STRUCTURE OF MAMMALIAN CYTOCHROME P450 2B4 REMARK 900 RELATED ID: 1PQ2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN DRUG METABOLIZING CYTOCHROME P450 2C8 REMARK 900 RELATED ID: 1NR6 RELATED DB: PDB REMARK 900 MICROSOMAL CYTOCHROME P450 2C5/3LVDH COMPLEX WITH DICLOFENAC REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FIRST 22 RESIDUES OF THE SWISS PROT REMARK 999 REFERENCE SEQUENCE (ACCESSION CODE P11712) REMARK 999 WERE REPLACED BY RESIDUES MAKKT. DBREF 1R9O A 23 490 UNP P11712 CP2C9_HUMAN 23 490 SEQADV 1R9O MET A 18 UNP P11712 ENGINEERED MUTATION SEQADV 1R9O ALA A 19 UNP P11712 ENGINEERED MUTATION SEQADV 1R9O LYS A 20 UNP P11712 ENGINEERED MUTATION SEQADV 1R9O LYS A 21 UNP P11712 ENGINEERED MUTATION SEQADV 1R9O THR A 22 UNP P11712 ENGINEERED MUTATION SEQADV 1R9O ILE A 490 UNP P11712 VAL 490 ENGINEERED MUTATION SEQADV 1R9O HIS A 491 UNP P11712 EXPRESSION TAG SEQADV 1R9O HIS A 492 UNP P11712 EXPRESSION TAG SEQADV 1R9O HIS A 493 UNP P11712 EXPRESSION TAG SEQADV 1R9O HIS A 494 UNP P11712 EXPRESSION TAG SEQRES 1 A 477 MET ALA LYS LYS THR SER SER GLY ARG GLY LYS LEU PRO SEQRES 2 A 477 PRO GLY PRO THR PRO LEU PRO VAL ILE GLY ASN ILE LEU SEQRES 3 A 477 GLN ILE GLY ILE LYS ASP ILE SER LYS SER LEU THR ASN SEQRES 4 A 477 LEU SER LYS VAL TYR GLY PRO VAL PHE THR LEU TYR PHE SEQRES 5 A 477 GLY LEU LYS PRO ILE VAL VAL LEU HIS GLY TYR GLU ALA SEQRES 6 A 477 VAL LYS GLU ALA LEU ILE ASP LEU GLY GLU GLU PHE SER SEQRES 7 A 477 GLY ARG GLY ILE PHE PRO LEU ALA GLU ARG ALA ASN ARG SEQRES 8 A 477 GLY PHE GLY ILE VAL PHE SER ASN GLY LYS LYS TRP LYS SEQRES 9 A 477 GLU ILE ARG ARG PHE SER LEU MET THR LEU ARG ASN PHE SEQRES 10 A 477 GLY MET GLY LYS ARG SER ILE GLU ASP ARG VAL GLN GLU SEQRES 11 A 477 GLU ALA ARG CYS LEU VAL GLU GLU LEU ARG LYS THR LYS SEQRES 12 A 477 ALA SER PRO CYS ASP PRO THR PHE ILE LEU GLY CYS ALA SEQRES 13 A 477 PRO CYS ASN VAL ILE CYS SER ILE ILE PHE HIS LYS ARG SEQRES 14 A 477 PHE ASP TYR LYS ASP GLN GLN PHE LEU ASN LEU MET GLU SEQRES 15 A 477 LYS LEU ASN GLU ASN ILE LYS ILE LEU SER SER PRO TRP SEQRES 16 A 477 ILE GLN ILE CYS ASN ASN PHE SER PRO ILE ILE ASP TYR SEQRES 17 A 477 PHE PRO GLY THR HIS ASN LYS LEU LEU LYS ASN VAL ALA SEQRES 18 A 477 PHE MET LYS SER TYR ILE LEU GLU LYS VAL LYS GLU HIS SEQRES 19 A 477 GLN GLU SER MET ASP MET ASN ASN PRO GLN ASP PHE ILE SEQRES 20 A 477 ASP CYS PHE LEU MET LYS MET GLU LYS GLU LYS HIS ASN SEQRES 21 A 477 GLN PRO SER GLU PHE THR ILE GLU SER LEU GLU ASN THR SEQRES 22 A 477 ALA VAL ASP LEU PHE GLY ALA GLY THR GLU THR THR SER SEQRES 23 A 477 THR THR LEU ARG TYR ALA LEU LEU LEU LEU LEU LYS HIS SEQRES 24 A 477 PRO GLU VAL THR ALA LYS VAL GLN GLU GLU ILE GLU ARG SEQRES 25 A 477 VAL ILE GLY ARG ASN ARG SER PRO CYS MET GLN ASP ARG SEQRES 26 A 477 SER HIS MET PRO TYR THR ASP ALA VAL VAL HIS GLU VAL SEQRES 27 A 477 GLN ARG TYR ILE ASP LEU LEU PRO THR SER LEU PRO HIS SEQRES 28 A 477 ALA VAL THR CYS ASP ILE LYS PHE ARG ASN TYR LEU ILE SEQRES 29 A 477 PRO LYS GLY THR THR ILE LEU ILE SER LEU THR SER VAL SEQRES 30 A 477 LEU HIS ASP ASN LYS GLU PHE PRO ASN PRO GLU MET PHE SEQRES 31 A 477 ASP PRO HIS HIS PHE LEU ASP GLU GLY GLY ASN PHE LYS SEQRES 32 A 477 LYS SER LYS TYR PHE MET PRO PHE SER ALA GLY LYS ARG SEQRES 33 A 477 ILE CYS VAL GLY GLU ALA LEU ALA GLY MET GLU LEU PHE SEQRES 34 A 477 LEU PHE LEU THR SER ILE LEU GLN ASN PHE ASN LEU LYS SEQRES 35 A 477 SER LEU VAL ASP PRO LYS ASN LEU ASP THR THR PRO VAL SEQRES 36 A 477 VAL ASN GLY PHE ALA SER VAL PRO PRO PHE TYR GLN LEU SEQRES 37 A 477 CYS PHE ILE PRO ILE HIS HIS HIS HIS HET HEM A 500 43 HET FLP A 501 18 HET GOL A 502 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM FLP FLURBIPROFEN HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 FLP C15 H13 F O2 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *255(H2 O) HELIX 1 1 GLY A 46 GLY A 62 1 17 HELIX 2 2 GLY A 79 ILE A 88 1 10 HELIX 3 3 ASN A 116 ARG A 132 1 17 HELIX 4 4 SER A 140 LYS A 158 1 19 HELIX 5 5 PRO A 166 HIS A 184 1 19 HELIX 6 6 ASP A 191 SER A 209 1 19 HELIX 7 7 THR A 229 SER A 254 1 26 HELIX 8 8 ASP A 262 LYS A 275 1 14 HELIX 9 9 THR A 283 HIS A 316 1 34 HELIX 10 10 HIS A 316 ILE A 331 1 16 HELIX 11 11 CYS A 338 HIS A 344 5 7 HELIX 12 12 MET A 345 ASP A 360 1 16 HELIX 13 13 LEU A 391 HIS A 396 1 6 HELIX 14 14 ASP A 408 LEU A 413 5 6 HELIX 15 15 ALA A 430 ILE A 434 5 5 HELIX 16 16 GLY A 437 ASN A 455 1 19 HELIX 17 17 ASP A 463 LEU A 467 5 5 SHEET 1 A 5 VAL A 64 TYR A 68 0 SHEET 2 A 5 PRO A 73 LEU A 77 -1 O VAL A 76 N PHE A 65 SHEET 3 A 5 THR A 386 ILE A 389 1 O LEU A 388 N VAL A 75 SHEET 4 A 5 HIS A 368 ALA A 369 -1 N HIS A 368 O ILE A 387 SHEET 5 A 5 GLY A 96 ARG A 97 -1 N GLY A 96 O ALA A 369 SHEET 1 B 2 ILE A 374 PHE A 376 0 SHEET 2 B 2 TYR A 379 ILE A 381 -1 O ILE A 381 N ILE A 374 SHEET 1 C 2 PHE A 456 SER A 460 0 SHEET 2 C 2 LEU A 485 PRO A 489 -1 O ILE A 488 N ASN A 457 LINK SG CYS A 435 FE HEM A 500 1555 1555 2.38 LINK FE HEM A 500 O HOH A 600 1555 1555 2.44 CISPEP 1 GLN A 278 PRO A 279 0 -0.93 SITE 1 AC1 24 ARG A 97 ILE A 112 VAL A 113 TRP A 120 SITE 2 AC1 24 ALA A 297 GLY A 298 THR A 301 THR A 302 SITE 3 AC1 24 THR A 305 GLN A 356 LEU A 362 SER A 365 SITE 4 AC1 24 HIS A 368 PRO A 427 PHE A 428 SER A 429 SITE 5 AC1 24 ARG A 433 CYS A 435 VAL A 436 GLY A 437 SITE 6 AC1 24 ALA A 441 GLU A 444 HOH A 600 HOH A 696 SITE 1 AC2 9 ARG A 108 ASN A 204 ILE A 205 LEU A 208 SITE 2 AC2 9 MET A 240 ASP A 293 GLY A 296 ALA A 297 SITE 3 AC2 9 HOH A 600 SITE 1 AC3 3 ILE A 205 GLU A 300 ALA A 477 CRYST1 91.047 91.047 169.480 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010983 0.006341 0.000000 0.00000 SCALE2 0.000000 0.012682 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005900 0.00000