data_1RAU # _entry.id 1RAU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1RAU pdb_00001rau 10.2210/pdb1rau/pdb WWPDB D_1000175979 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-01-31 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RAU _pdbx_database_status.recvd_initial_deposition_date 1993-07-29 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cheong, C.' 1 'Moore, P.B.' 2 # _citation.id primary _citation.title 'Solution structure of an unusually stable RNA tetraplex containing G- and U-quartet structures.' _citation.journal_abbrev Biochemistry _citation.journal_volume 31 _citation.page_first 8406 _citation.page_last 8414 _citation.year 1992 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 1382577 _citation.pdbx_database_id_DOI 10.1021/bi00151a003 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cheong, C.' 1 ? primary 'Moore, P.B.' 2 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') ; _entity.formula_weight 1948.197 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_keywords.entity_id 1 _entity_keywords.text 'RIBONUCLEIC ACID' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UGGGGU _entity_poly.pdbx_seq_one_letter_code_can UGGGGU _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 G n 1 3 G n 1 4 G n 1 5 G n 1 6 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'CHEMICALLY SYNTHESIZED' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n B 1 1 U 1 1 1 U U B . n B 1 2 G 2 2 2 G G B . n B 1 3 G 3 3 3 G G B . n B 1 4 G 4 4 4 G G B . n B 1 5 G 5 5 5 G G B . n B 1 6 U 6 6 6 U U B . n C 1 1 U 1 1 1 U U C . n C 1 2 G 2 2 2 G G C . n C 1 3 G 3 3 3 G G C . n C 1 4 G 4 4 4 G G C . n C 1 5 G 5 5 5 G G C . n C 1 6 U 6 6 6 U U C . n D 1 1 U 1 1 1 U U D . n D 1 2 G 2 2 2 G G D . n D 1 3 G 3 3 3 G G D . n D 1 4 G 4 4 4 G G D . n D 1 5 G 5 5 5 G G D . n D 1 6 U 6 6 6 U U D . n # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # _cell.entry_id 1RAU _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RAU _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1RAU _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1RAU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1RAU _struct.title 'SOLUTION STRUCTURE OF AN UNUSUALLY STABLE RNA TETRAPLEX CONTAINING G-AND U-QUARTET STRUCTURES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RAU _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, TETRAPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1RAU _struct_ref.pdbx_db_accession 1RAU _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1RAU A 1 ? 6 ? 1RAU 1 ? 6 ? 1 6 2 1 1RAU B 1 ? 6 ? 1RAU 1 ? 6 ? 1 6 3 1 1RAU C 1 ? 6 ? 1RAU 1 ? 6 ? 1 6 4 1 1RAU D 1 ? 6 ? 1RAU 1 ? 6 ? 1 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 B G 2 O6 ? ? A G 2 B G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 B G 2 N7 ? ? A G 2 B G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A G 2 N7 ? ? ? 1_555 D G 2 N2 ? ? A G 2 D G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A G 2 O6 ? ? ? 1_555 D G 2 N1 ? ? A G 2 D G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A G 3 N1 ? ? ? 1_555 B G 3 O6 ? ? A G 3 B G 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A G 3 N2 ? ? ? 1_555 B G 3 N7 ? ? A G 3 B G 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A G 3 N7 ? ? ? 1_555 D G 3 N2 ? ? A G 3 D G 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 D G 3 N1 ? ? A G 3 D G 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 B G 4 O6 ? ? A G 4 B G 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B G 4 N7 ? ? A G 4 B G 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A G 4 N7 ? ? ? 1_555 D G 4 N2 ? ? A G 4 D G 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 D G 4 N1 ? ? A G 4 D G 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 B G 5 O6 ? ? A G 5 B G 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 B G 5 N7 ? ? A G 5 B G 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A G 5 N1 ? ? ? 1_555 B U 6 O4 ? ? A G 5 B U 6 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog16 hydrog ? ? A G 5 N7 ? ? ? 1_555 D G 5 N2 ? ? A G 5 D G 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A G 5 O6 ? ? ? 1_555 D G 5 N1 ? ? A G 5 D G 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A U 6 N3 ? ? ? 1_555 B U 6 O4 ? ? A U 6 B U 6 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog19 hydrog ? ? A U 6 O4 ? ? ? 1_555 D G 5 N1 ? ? A U 6 D G 5 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog20 hydrog ? ? A U 6 O4 ? ? ? 1_555 D U 6 N3 ? ? A U 6 D U 6 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog21 hydrog ? ? B G 2 N1 ? ? ? 1_555 C G 2 O6 ? ? B G 2 C G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? B G 2 N2 ? ? ? 1_555 C G 2 N7 ? ? B G 2 C G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? B G 3 N1 ? ? ? 1_555 C G 3 O6 ? ? B G 3 C G 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? B G 3 N2 ? ? ? 1_555 C G 3 N7 ? ? B G 3 C G 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? B G 4 N1 ? ? ? 1_555 C G 4 O6 ? ? B G 4 C G 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? B G 4 N2 ? ? ? 1_555 C G 4 N7 ? ? B G 4 C G 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? B G 5 N1 ? ? ? 1_555 C G 5 O6 ? ? B G 5 C G 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? B G 5 N2 ? ? ? 1_555 C G 5 N7 ? ? B G 5 C G 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? B G 5 N1 ? ? ? 1_555 C U 6 O4 ? ? B G 5 C U 6 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog30 hydrog ? ? B U 6 N3 ? ? ? 1_555 C U 6 O4 ? ? B U 6 C U 6 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog31 hydrog ? ? C G 2 N1 ? ? ? 1_555 D G 2 O6 ? ? C G 2 D G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? C G 2 N2 ? ? ? 1_555 D G 2 N7 ? ? C G 2 D G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? C G 3 N1 ? ? ? 1_555 D G 3 O6 ? ? C G 3 D G 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? C G 3 N2 ? ? ? 1_555 D G 3 N7 ? ? C G 3 D G 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? C G 4 N1 ? ? ? 1_555 D G 4 O6 ? ? C G 4 D G 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? C G 4 N2 ? ? ? 1_555 D G 4 N7 ? ? C G 4 D G 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? C G 5 N1 ? ? ? 1_555 D G 5 O6 ? ? C G 5 D G 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? C G 5 N2 ? ? ? 1_555 D G 5 N7 ? ? C G 5 D G 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? C G 5 N1 ? ? ? 1_555 D U 6 O4 ? ? C G 5 D U 6 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog40 hydrog ? ? C U 6 N3 ? ? ? 1_555 D U 6 O4 ? ? C U 6 D U 6 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A U 1 ? ? "C1'" A U 1 ? ? N1 A U 1 ? ? 113.29 108.50 4.79 0.70 N 2 1 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 116.57 113.10 3.47 0.50 N 3 1 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.60 106.40 -2.80 0.40 N 4 1 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 116.39 113.10 3.29 0.50 N 5 1 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 103.83 106.40 -2.57 0.40 N 6 1 N9 A G 5 ? ? "C1'" A G 5 ? ? "C2'" A G 5 ? ? 101.40 112.00 -10.60 1.10 N 7 1 "C5'" A U 6 ? ? "C4'" A U 6 ? ? "C3'" A U 6 ? ? 105.75 115.20 -9.45 1.40 N 8 1 "C5'" A U 6 ? ? "C4'" A U 6 ? ? "O4'" A U 6 ? ? 117.64 109.80 7.84 0.90 N 9 1 "O4'" A U 6 ? ? "C1'" A U 6 ? ? "C2'" A U 6 ? ? 98.62 105.80 -7.18 1.00 N 10 1 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 122.07 108.50 13.57 0.70 N 11 1 "O4'" B U 1 ? ? "C1'" B U 1 ? ? N1 B U 1 ? ? 113.22 108.50 4.72 0.70 N 12 1 N7 B G 2 ? ? C8 B G 2 ? ? N9 B G 2 ? ? 116.50 113.10 3.40 0.50 N 13 1 C8 B G 2 ? ? N9 B G 2 ? ? C4 B G 2 ? ? 103.63 106.40 -2.77 0.40 N 14 1 N7 B G 4 ? ? C8 B G 4 ? ? N9 B G 4 ? ? 116.40 113.10 3.30 0.50 N 15 1 C8 B G 4 ? ? N9 B G 4 ? ? C4 B G 4 ? ? 103.84 106.40 -2.56 0.40 N 16 1 N9 B G 5 ? ? "C1'" B G 5 ? ? "C2'" B G 5 ? ? 101.46 112.00 -10.54 1.10 N 17 1 "C5'" B U 6 ? ? "C4'" B U 6 ? ? "C3'" B U 6 ? ? 105.79 115.20 -9.41 1.40 N 18 1 "C5'" B U 6 ? ? "C4'" B U 6 ? ? "O4'" B U 6 ? ? 117.64 109.80 7.84 0.90 N 19 1 "O4'" B U 6 ? ? "C1'" B U 6 ? ? "C2'" B U 6 ? ? 98.58 105.80 -7.22 1.00 N 20 1 "O4'" B U 6 ? ? "C1'" B U 6 ? ? N1 B U 6 ? ? 122.19 108.50 13.69 0.70 N 21 1 "O4'" C U 1 ? ? "C1'" C U 1 ? ? N1 C U 1 ? ? 113.27 108.50 4.77 0.70 N 22 1 N7 C G 2 ? ? C8 C G 2 ? ? N9 C G 2 ? ? 116.48 113.10 3.38 0.50 N 23 1 C8 C G 2 ? ? N9 C G 2 ? ? C4 C G 2 ? ? 103.71 106.40 -2.69 0.40 N 24 1 N7 C G 4 ? ? C8 C G 4 ? ? N9 C G 4 ? ? 116.39 113.10 3.29 0.50 N 25 1 C8 C G 4 ? ? N9 C G 4 ? ? C4 C G 4 ? ? 103.88 106.40 -2.52 0.40 N 26 1 N9 C G 5 ? ? "C1'" C G 5 ? ? "C2'" C G 5 ? ? 101.45 112.00 -10.55 1.10 N 27 1 "C5'" C U 6 ? ? "C4'" C U 6 ? ? "C3'" C U 6 ? ? 105.80 115.20 -9.40 1.40 N 28 1 "C5'" C U 6 ? ? "C4'" C U 6 ? ? "O4'" C U 6 ? ? 117.58 109.80 7.78 0.90 N 29 1 "O4'" C U 6 ? ? "C1'" C U 6 ? ? "C2'" C U 6 ? ? 98.59 105.80 -7.21 1.00 N 30 1 "O4'" C U 6 ? ? "C1'" C U 6 ? ? N1 C U 6 ? ? 122.10 108.50 13.60 0.70 N 31 1 "O4'" D U 1 ? ? "C1'" D U 1 ? ? N1 D U 1 ? ? 113.26 108.50 4.76 0.70 N 32 1 N7 D G 2 ? ? C8 D G 2 ? ? N9 D G 2 ? ? 116.48 113.10 3.38 0.50 N 33 1 C8 D G 2 ? ? N9 D G 2 ? ? C4 D G 2 ? ? 103.68 106.40 -2.72 0.40 N 34 1 "O4'" D G 4 ? ? "C1'" D G 4 ? ? N9 D G 4 ? ? 112.70 108.50 4.20 0.70 N 35 1 N7 D G 4 ? ? C8 D G 4 ? ? N9 D G 4 ? ? 116.39 113.10 3.29 0.50 N 36 1 C8 D G 4 ? ? N9 D G 4 ? ? C4 D G 4 ? ? 103.83 106.40 -2.57 0.40 N 37 1 N9 D G 5 ? ? "C1'" D G 5 ? ? "C2'" D G 5 ? ? 101.50 112.00 -10.50 1.10 N 38 1 "C5'" D U 6 ? ? "C4'" D U 6 ? ? "C3'" D U 6 ? ? 105.80 115.20 -9.40 1.40 N 39 1 "C5'" D U 6 ? ? "C4'" D U 6 ? ? "O4'" D U 6 ? ? 117.62 109.80 7.82 0.90 N 40 1 "O4'" D U 6 ? ? "C1'" D U 6 ? ? "C2'" D U 6 ? ? 98.61 105.80 -7.19 1.00 N 41 1 "O4'" D U 6 ? ? "C1'" D U 6 ? ? N1 D U 6 ? ? 122.09 108.50 13.59 0.70 N # _pdbx_nmr_ensemble.entry_id 1RAU _pdbx_nmr_ensemble.conformers_calculated_total_number 8 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 ? 'H2O AND 100% D2O' 2 ? 'H2O AND 100% D2O' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'POTASSIUM PHOSPHATE' 10 mM ? 1 KCL 50 mM ? 1 EDTA .5 mM ? 2 'POTASSIUM PHOSPHATE' 18 mM ? 2 KCL 88 mM ? 2 EDTA .9 mM ? # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 278 ? 6.7 ? . K 2 313 ? 5.2 ? . K # _pdbx_nmr_details.entry_id 1RAU _pdbx_nmr_details.text ;ATA COLLECTION PARAMETERS: FREQUENCY: 500 MHZ FOR 1H, 202 MHZ FOR 31P SAMPLE TUBE: 5 MM SPECTRA FOR ASSIGNMENTS: HOMONUCLEAR PROTON 2D, 1H-31P COSY; SPECTRA FOR CONSTRAINTS: NOESY, DQF-COSY, 1H-31P COSY MOLECULAR CHARACTERISTICS: OLIGOMER STATE: TETRAMERIC MOLECULAR WEIGHT: 13 KD NUCLEOTIDES: 24 SOLUTION CONDITIONS: SOLVENT: H2O AND 100% D2O TEMPERATURES: 5C AND 40C PH: 6.7 AND 5.2 STRAND CONCENTRATION: 2.2 MM ADDITIVES: 10 MM POTASSIUM PHOSPHATE, 50 MM KCL, 0.5 MM EDTA OR 18 MM POTASSIUM PHOSPHATE, 88 MM KCL, 0.9 MM EDTA ; # _pdbx_nmr_constraints.entry_id 1RAU _pdbx_nmr_constraints.NOE_constraints_total 428 _pdbx_nmr_constraints.NOE_intraresidue_total_count 212 _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 36 _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? # _pdbx_nmr_refine.entry_id 1RAU _pdbx_nmr_refine.method ? _pdbx_nmr_refine.details ;STRUCTURE CALCULATION: MOLECULAR DYNAMICS AND ENERGY MINIMIZATION USING RELAXATION MATRIX ROUTINE IN X-PLOR CONSTRAINTS: TOTAL 428 DISTANCE CONSTRAINTS (ABOUT 18/NUCLEOTIDE) 212 FROM INTRANUCLEOTIDE NOES 112 FROM INTERNUCLEOTIDE NOES 36 FROM HYDROGEN BONDS 8 FROM EXCHANGEABLE PROTON NOES 60 DERIVED FROM BACKBONE TORSION ANGLES DIHEDRAL ANGLE CONSTRAINTS 104 BACKBONE AND GLYCOSIDIC TORSION ANGLES SUGAR RING TORSION ANGLES CONSTRAINTS TO MAKE QUARTET PLANES PLANAR 4-FOLD ROTATIONAL SYMMETRY CONSTRAINTS QUALITY OF STRUCTURE NUMBER OF REFINED STRUCTURES: 8 RMS DEVIATION: 0.71A FOR ALL HEAVY ATOMS ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_software.name X-PLOR _pdbx_nmr_software.version ? _pdbx_nmr_software.classification refinement _pdbx_nmr_software.authors BRUNGER _pdbx_nmr_software.ordinal 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal G OP3 O N N 1 G P P N N 2 G OP1 O N N 3 G OP2 O N N 4 G "O5'" O N N 5 G "C5'" C N N 6 G "C4'" C N R 7 G "O4'" O N N 8 G "C3'" C N S 9 G "O3'" O N N 10 G "C2'" C N R 11 G "O2'" O N N 12 G "C1'" C N R 13 G N9 N Y N 14 G C8 C Y N 15 G N7 N Y N 16 G C5 C Y N 17 G C6 C N N 18 G O6 O N N 19 G N1 N N N 20 G C2 C N N 21 G N2 N N N 22 G N3 N N N 23 G C4 C Y N 24 G HOP3 H N N 25 G HOP2 H N N 26 G "H5'" H N N 27 G "H5''" H N N 28 G "H4'" H N N 29 G "H3'" H N N 30 G "HO3'" H N N 31 G "H2'" H N N 32 G "HO2'" H N N 33 G "H1'" H N N 34 G H8 H N N 35 G H1 H N N 36 G H21 H N N 37 G H22 H N N 38 U OP3 O N N 39 U P P N N 40 U OP1 O N N 41 U OP2 O N N 42 U "O5'" O N N 43 U "C5'" C N N 44 U "C4'" C N R 45 U "O4'" O N N 46 U "C3'" C N S 47 U "O3'" O N N 48 U "C2'" C N R 49 U "O2'" O N N 50 U "C1'" C N R 51 U N1 N N N 52 U C2 C N N 53 U O2 O N N 54 U N3 N N N 55 U C4 C N N 56 U O4 O N N 57 U C5 C N N 58 U C6 C N N 59 U HOP3 H N N 60 U HOP2 H N N 61 U "H5'" H N N 62 U "H5''" H N N 63 U "H4'" H N N 64 U "H3'" H N N 65 U "HO3'" H N N 66 U "H2'" H N N 67 U "HO2'" H N N 68 U "H1'" H N N 69 U H3 H N N 70 U H5 H N N 71 U H6 H N N 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G OP3 P sing N N 1 G OP3 HOP3 sing N N 2 G P OP1 doub N N 3 G P OP2 sing N N 4 G P "O5'" sing N N 5 G OP2 HOP2 sing N N 6 G "O5'" "C5'" sing N N 7 G "C5'" "C4'" sing N N 8 G "C5'" "H5'" sing N N 9 G "C5'" "H5''" sing N N 10 G "C4'" "O4'" sing N N 11 G "C4'" "C3'" sing N N 12 G "C4'" "H4'" sing N N 13 G "O4'" "C1'" sing N N 14 G "C3'" "O3'" sing N N 15 G "C3'" "C2'" sing N N 16 G "C3'" "H3'" sing N N 17 G "O3'" "HO3'" sing N N 18 G "C2'" "O2'" sing N N 19 G "C2'" "C1'" sing N N 20 G "C2'" "H2'" sing N N 21 G "O2'" "HO2'" sing N N 22 G "C1'" N9 sing N N 23 G "C1'" "H1'" sing N N 24 G N9 C8 sing Y N 25 G N9 C4 sing Y N 26 G C8 N7 doub Y N 27 G C8 H8 sing N N 28 G N7 C5 sing Y N 29 G C5 C6 sing N N 30 G C5 C4 doub Y N 31 G C6 O6 doub N N 32 G C6 N1 sing N N 33 G N1 C2 sing N N 34 G N1 H1 sing N N 35 G C2 N2 sing N N 36 G C2 N3 doub N N 37 G N2 H21 sing N N 38 G N2 H22 sing N N 39 G N3 C4 sing N N 40 U OP3 P sing N N 41 U OP3 HOP3 sing N N 42 U P OP1 doub N N 43 U P OP2 sing N N 44 U P "O5'" sing N N 45 U OP2 HOP2 sing N N 46 U "O5'" "C5'" sing N N 47 U "C5'" "C4'" sing N N 48 U "C5'" "H5'" sing N N 49 U "C5'" "H5''" sing N N 50 U "C4'" "O4'" sing N N 51 U "C4'" "C3'" sing N N 52 U "C4'" "H4'" sing N N 53 U "O4'" "C1'" sing N N 54 U "C3'" "O3'" sing N N 55 U "C3'" "C2'" sing N N 56 U "C3'" "H3'" sing N N 57 U "O3'" "HO3'" sing N N 58 U "C2'" "O2'" sing N N 59 U "C2'" "C1'" sing N N 60 U "C2'" "H2'" sing N N 61 U "O2'" "HO2'" sing N N 62 U "C1'" N1 sing N N 63 U "C1'" "H1'" sing N N 64 U N1 C2 sing N N 65 U N1 C6 sing N N 66 U C2 O2 doub N N 67 U C2 N3 sing N N 68 U N3 C4 sing N N 69 U N3 H3 sing N N 70 U C4 O4 doub N N 71 U C4 C5 sing N N 72 U C5 C6 doub N N 73 U C5 H5 sing N N 74 U C6 H6 sing N N 75 # _ndb_struct_conf_na.entry_id 1RAU _ndb_struct_conf_na.feature 'quadruple helix' # _atom_sites.entry_id 1RAU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_