HEADER METAL BINDING PROTEIN 09-NOV-03 1RFH TITLE SOLUTION STRUCTURE OF THE C1 DOMAIN OF NORE1, A NOVEL RAS EFFECTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS ASSOCIATION (RALGDS/AF-6) DOMAIN FAMILY 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CYSTEINE-RICH DOMAIN; COMPND 5 SYNONYM: NOVEL RAS EFFECTOR 1, RAP1-BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RASSF5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 KEYWDS ZINC, SIGNAL TRANSDUCTION, APOPTOSIS, CYSTEINE RICH DOMAIN, METAL KEYWDS 2 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 21 MDLTYP MINIMIZED AVERAGE AUTHOR E.GUIBERMAN,S.WOHLGEMUTH,C.HERRMANN,S.HARJES,K.H.MUELLER,P.BAYER REVDAT 4 22-MAY-24 1RFH 1 REMARK REVDAT 3 02-MAR-22 1RFH 1 REMARK LINK REVDAT 2 24-FEB-09 1RFH 1 VERSN REVDAT 1 14-JUN-05 1RFH 0 JRNL AUTH E.GUIBERMAN,S.WOHLGEMUTH,C.HERRMANN,S.HARJES,K.H.MUELLER, JRNL AUTH 2 P.BAYER JRNL TITL THE SOLUTION STRUCTURE OF C1 DOMAIN OF NORE1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AURELIA 2.8.11, CNS 1.1 REMARK 3 AUTHORS : BRUKER (AURELIA), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 557 RESTRAINTS, 475 ARE NOE- REMARK 3 DERIVED REMARK 3 DISTANCE CONSTRAINTS, 48 DIHEDRAL ANGLE RESTRAINTS, 34 DISTANCE REMARK 3 RESTRAINTS REMARK 3 FROM HYDROGEN BONDS. REMARK 4 REMARK 4 1RFH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020700. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 300; 300 REMARK 210 PH : 6.9; 6.9; 6.9 REMARK 210 IONIC STRENGTH : 0.5 MM NAN3; 0.5 MM NAN3; 0.5 MM REMARK 210 NAN3 REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.6MM C1 DOMAIN UNLABELED, 20MM REMARK 210 PHOSPHATE BUFFER K; 2MM C1 REMARK 210 DOMAIN U-15N, 20MM PHOSPHATE REMARK 210 BUFFER K; 2MM C1 DOMAIN U-15N/ REMARK 210 13C, 20MM PHOSPHATE BUFFER K REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY; REMARK 210 3D_15N-SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.5, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 130 H VAL A 139 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 113 90.52 -60.08 REMARK 500 1 PHE A 120 100.64 53.96 REMARK 500 1 ALA A 124 92.69 -58.99 REMARK 500 1 CYS A 132 83.20 -59.87 REMARK 500 1 ARG A 137 -167.38 -105.39 REMARK 500 1 GLN A 142 88.13 -58.81 REMARK 500 1 CYS A 149 -47.84 -169.79 REMARK 500 1 LYS A 150 -140.24 -82.52 REMARK 500 2 GLU A 113 90.52 -60.08 REMARK 500 2 PHE A 120 100.64 53.96 REMARK 500 2 ALA A 124 92.69 -58.99 REMARK 500 2 CYS A 132 83.20 -59.87 REMARK 500 2 ARG A 137 -167.38 -105.39 REMARK 500 2 GLN A 142 88.13 -58.81 REMARK 500 2 CYS A 149 -47.84 -169.79 REMARK 500 2 LYS A 150 -140.24 -82.52 REMARK 500 3 ARG A 114 94.75 -62.34 REMARK 500 3 PHE A 120 99.57 53.60 REMARK 500 3 PRO A 129 -178.16 -50.92 REMARK 500 3 CYS A 132 87.60 -57.17 REMARK 500 3 CYS A 135 -68.02 -91.40 REMARK 500 3 GLN A 142 92.05 -58.53 REMARK 500 3 ALA A 147 -9.02 -57.18 REMARK 500 3 CYS A 149 -48.40 -178.55 REMARK 500 3 LYS A 150 -141.76 -70.53 REMARK 500 3 SER A 155 -72.04 -48.23 REMARK 500 3 GLN A 162 69.24 -103.57 REMARK 500 3 CYS A 165 107.20 -59.54 REMARK 500 4 GLU A 113 82.30 -64.11 REMARK 500 4 PHE A 120 124.43 60.53 REMARK 500 4 ALA A 124 94.54 -64.31 REMARK 500 4 LEU A 125 -164.56 -78.91 REMARK 500 4 ARG A 126 36.74 71.74 REMARK 500 4 PRO A 129 171.64 -46.18 REMARK 500 4 CYS A 132 89.26 -50.10 REMARK 500 4 CYS A 135 -67.25 -91.73 REMARK 500 4 GLN A 142 89.79 -59.91 REMARK 500 4 ALA A 147 -9.47 -59.11 REMARK 500 4 CYS A 149 -45.54 -174.03 REMARK 500 4 LYS A 150 -141.82 -83.68 REMARK 500 5 PHE A 120 107.03 55.28 REMARK 500 5 LEU A 125 -73.16 -86.78 REMARK 500 5 ARG A 126 -72.79 65.77 REMARK 500 5 PRO A 129 179.42 -49.80 REMARK 500 5 CYS A 132 85.91 -57.94 REMARK 500 5 CYS A 135 -65.23 -92.16 REMARK 500 5 GLN A 142 98.00 -62.15 REMARK 500 5 ALA A 147 -8.54 -59.36 REMARK 500 5 CYS A 149 -46.55 -175.76 REMARK 500 5 LYS A 150 -141.83 -77.22 REMARK 500 REMARK 500 THIS ENTRY HAS 207 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 132 SG REMARK 620 2 CYS A 135 SG 83.6 REMARK 620 3 HIS A 154 ND1 79.0 120.9 REMARK 620 4 CYS A 157 SG 132.9 105.0 127.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 118 ND1 REMARK 620 2 CYS A 146 SG 92.1 REMARK 620 3 CYS A 149 SG 80.8 84.9 REMARK 620 4 CYS A 165 SG 113.8 154.0 100.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 DBREF 1RFH A 108 166 UNP O70407 O70407_MOUSE 108 166 SEQRES 1 A 59 PRO ARG VAL LEU ALA GLU ARG GLY GLU GLY HIS ARG PHE SEQRES 2 A 59 VAL GLU LEU ALA LEU ARG GLY GLY PRO GLY TRP CYS ASP SEQRES 3 A 59 LEU CYS GLY ARG GLU VAL LEU ARG GLN ALA LEU ARG CYS SEQRES 4 A 59 ALA ASN CYS LYS PHE THR CYS HIS SER GLU CYS ARG SER SEQRES 5 A 59 LEU ILE GLN LEU ASP CYS ARG HET ZN A 1 1 HET ZN A 2 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 HIS A 154 SER A 159 1 6 SHEET 1 A 3 VAL A 121 GLU A 122 0 SHEET 2 A 3 LEU A 144 ARG A 145 -1 O ARG A 145 N VAL A 121 SHEET 3 A 3 THR A 152 CYS A 153 -1 O CYS A 153 N LEU A 144 SHEET 1 B 2 GLY A 130 TRP A 131 0 SHEET 2 B 2 GLU A 138 VAL A 139 -1 O VAL A 139 N GLY A 130 LINK ZN ZN A 1 SG CYS A 132 1555 1555 2.51 LINK ZN ZN A 1 SG CYS A 135 1555 1555 2.52 LINK ZN ZN A 1 ND1 HIS A 154 1555 1555 2.23 LINK ZN ZN A 1 SG CYS A 157 1555 1555 2.30 LINK ZN ZN A 2 ND1 HIS A 118 1555 1555 2.20 LINK ZN ZN A 2 SG CYS A 146 1555 1555 2.50 LINK ZN ZN A 2 SG CYS A 149 1555 1555 2.50 LINK ZN ZN A 2 SG CYS A 165 1555 1555 2.30 SITE 1 AC1 5 CYS A 132 LEU A 134 CYS A 135 HIS A 154 SITE 2 AC1 5 CYS A 157 SITE 1 AC2 5 HIS A 118 CYS A 146 ASN A 148 CYS A 149 SITE 2 AC2 5 CYS A 165 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1