HEADER HYDROLASE 12-NOV-03 1RGB TITLE PHOSPHOLIPASE A2 FROM VIPERA AMMODYTES MERIDIONALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOLIPASE A2; COMPND 3 CHAIN: A, B, K, L; COMPND 4 SYNONYM: PHOSPHATIDYLCHOLINE 2-ACYLHYDROLASE, VIPOXIN NON-TOXIC COMPND 5 COMPONENT, VIPOXIN B CHAIN; COMPND 6 EC: 3.1.1.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIPERA AMMODYTES MERIDIONALIS; SOURCE 3 ORGANISM_TAXID: 73841; SOURCE 4 STRAIN: MERIDIONALIS; SOURCE 5 SECRETION: VENOM KEYWDS PHOSPHOLIPASE A2, NEUROTOXIN, ELAIDOYLAMIDE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.N.GEORGIEVA REVDAT 3 03-OCT-18 1RGB 1 REMARK REVDAT 2 24-FEB-09 1RGB 1 VERSN REVDAT 1 18-JAN-05 1RGB 0 JRNL AUTH D.N.GEORGIEVA,W.RYPNIEWSKI,A.GABDOULKHAKOV,N.GENOV,C.BETZEL JRNL TITL ASP49 PHOSPHOLIPASE A(2)-ELAIDOYLAMIDE COMPLEX: A NEW MODE JRNL TITL 2 OF INHIBITION. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 319 1314 2004 JRNL REFN ISSN 0006-291X JRNL PMID 15194511 JRNL DOI 10.1016/J.BBRC.2004.05.106 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 995111.910 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 6922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 349 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.015 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1030 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 64 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.048 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM SIGMAA (A) : 0.51 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.70 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.410 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.620 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 13.630; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 16.230; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.13 REMARK 3 BSOL : 23.65 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : OLA1.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : OLA1.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RGB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020725. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6922 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 19.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-8000, HEPES, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.28400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.73450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.33500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.73450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.28400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.33500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 7 CG CD CE NZ REMARK 480 ILE A 9 CD1 REMARK 480 LYS A 12 CG NZ REMARK 480 LEU A 13 CD2 REMARK 480 SER A 18 OG REMARK 480 GLN A 34 CG OE1 NE2 REMARK 480 LYS A 38 CG CD CE REMARK 480 ARG A 43 CG REMARK 480 ARG A 54 NE CZ NH1 NH2 REMARK 480 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 480 TYR A 75 OH REMARK 480 LYS A 78 CG NZ REMARK 480 LYS A 79 CG CD CE NZ REMARK 480 LYS A 86 CA CB CG CD CE NZ REMARK 480 ASN A 89 CB CG OD1 ND2 REMARK 480 ARG A 93 CD NE CZ NH1 NH2 REMARK 480 ILE A 95 CD1 REMARK 480 GLN A 108 CD OE1 NE2 REMARK 480 LYS A 110 CD CE REMARK 480 ASN A 111 CG OD1 ND2 REMARK 480 LYS A 115 CG CD CE NZ REMARK 480 ASN A 116 CB REMARK 480 LYS A 118 CD CE REMARK 480 LEU A 120 CD1 REMARK 480 SER A 121 OG REMARK 480 ARG A 127 CB CG CD NE REMARK 480 GLN A 128 CB CG CD OE1 NE2 REMARK 480 THR A 129 CB OG1 CG2 REMARK 480 SER A 130 N CB OG REMARK 480 GLU A 131 CD OE1 OE2 REMARK 480 LYS B 7 NZ REMARK 480 LYS B 12 CG CD REMARK 480 LEU B 13 CG CD1 CD2 REMARK 480 PHE B 17 CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS B 38 CG CD CE NZ REMARK 480 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 56 CG CD REMARK 480 ILE B 72 CD1 REMARK 480 LYS B 78 CG CD CE NZ REMARK 480 LYS B 86 CG CD CE NZ REMARK 480 ASN B 88 CG OD1 ND2 REMARK 480 ASN B 89 CB CG OD1 ND2 REMARK 480 ARG B 93 CD NE CZ NH1 NH2 REMARK 480 ILE B 95 CG1 CD1 REMARK 480 GLN B 108 CD OE1 NE2 REMARK 480 LYS B 110 CE NZ REMARK 480 ASN B 111 CG OD1 ND2 REMARK 480 LYS B 115 CG CD CE NZ REMARK 480 ASN B 116 CG OD1 ND2 REMARK 480 ARG B 127 CG CD NE REMARK 480 LYS K 7 CG CE NZ REMARK 480 LYS K 12 CG NZ REMARK 480 ILE K 23 CG1 CG2 CD1 REMARK 480 GLY K 35 C O REMARK 480 ASP K 42 OD1 OD2 REMARK 480 ARG K 43 CG CD NE CZ NH1 NH2 REMARK 480 ARG K 56 CG CD NE CZ NH1 NH2 REMARK 480 SER K 74 OG REMARK 480 LYS K 78 CG CD CE NZ REMARK 480 ASN K 81 CG OD1 ND2 REMARK 480 LYS K 86 CB CG CD CE NZ REMARK 480 ASN K 88 CB CG OD1 ND2 REMARK 480 ASN K 89 CG OD1 ND2 REMARK 480 ARG K 93 CG CD NE CZ NH1 NH2 REMARK 480 ASP K 94 CB CG OD1 OD2 REMARK 480 LYS K 110 CG CD CE NZ REMARK 480 ASN K 111 CB CG OD1 ND2 REMARK 480 ASN K 114 CB OD1 REMARK 480 LYS K 115 CB CG CD CE NZ REMARK 480 ASN K 116 CG OD1 ND2 REMARK 480 TYR K 117 CD1 CD2 CE1 CE2 CZ OH REMARK 480 ARG K 125 CG REMARK 480 GLN K 128 CB REMARK 480 THR K 129 C O CB OG1 CG2 REMARK 480 SER K 130 N REMARK 480 GLU K 131 CG REMARK 480 LYS L 7 NZ REMARK 480 MET L 8 CB CG CE REMARK 480 ILE L 9 CG1 CG2 CD1 REMARK 480 LEU L 13 CG CD1 CD2 REMARK 480 LYS L 38 CD CE NZ REMARK 480 ARG L 43 CG CD NE CZ NH1 NH2 REMARK 480 ARG L 54 CG CD NH1 REMARK 480 ARG L 56 CZ NH1 NH2 REMARK 480 CYS L 61 C O REMARK 480 LYS L 69 CD CE NZ REMARK 480 ILE L 72 CD1 REMARK 480 LYS L 78 CD CE NZ REMARK 480 ASN L 81 ND2 REMARK 480 LYS L 86 CG CD CE NZ REMARK 480 ASN L 89 CB CG OD1 ND2 REMARK 480 ARG L 93 CD NE CZ NH1 NH2 REMARK 480 GLN L 108 CG OE1 REMARK 480 LYS L 110 CD CE NZ REMARK 480 ASN L 111 CG OD1 REMARK 480 LYS L 115 CG CD CE NZ REMARK 480 ASN L 116 OD1 ND2 REMARK 480 TYR L 117 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 LEU L 120 CD1 CD2 REMARK 480 ARG L 125 CD NE CZ NH1 NH2 REMARK 480 ARG L 127 CB CG CD NH1 REMARK 480 THR L 129 CG2 REMARK 480 GLN L 132 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS K 61 CA - CB - SG ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 13 53.94 -105.76 REMARK 500 PHE A 17 -15.25 65.24 REMARK 500 TRP A 20 -15.79 -39.91 REMARK 500 TYR A 25 129.64 171.99 REMARK 500 PRO A 37 -166.42 -66.41 REMARK 500 LYS A 38 -78.15 -116.62 REMARK 500 ASP A 39 -111.11 -107.09 REMARK 500 CYS A 45 -83.91 -52.22 REMARK 500 PHE A 46 -72.94 -8.23 REMARK 500 VAL A 55 154.52 -28.98 REMARK 500 ILE A 72 84.01 -150.12 REMARK 500 SER A 76 154.71 168.32 REMARK 500 LYS A 79 -20.74 53.04 REMARK 500 LYS A 86 97.46 -10.57 REMARK 500 ASN A 89 63.15 -160.59 REMARK 500 ASP A 94 -76.16 -67.62 REMARK 500 ILE A 95 -48.50 -25.19 REMARK 500 CYS A 98 -72.18 -49.75 REMARK 500 ARG A 100 -73.01 -44.48 REMARK 500 ALA A 103 -72.19 -58.48 REMARK 500 ASN A 109 54.28 -146.87 REMARK 500 LYS A 110 -74.75 -63.89 REMARK 500 ASN A 111 -39.13 -38.76 REMARK 500 PHE A 119 108.21 81.49 REMARK 500 ARG A 127 87.59 -23.96 REMARK 500 GLN A 128 -176.19 -170.65 REMARK 500 GLU A 131 -159.10 -68.71 REMARK 500 PHE B 5 -32.86 -39.25 REMARK 500 ILE B 9 -71.46 -71.46 REMARK 500 ALA B 16 118.05 1.87 REMARK 500 PHE B 17 24.38 104.90 REMARK 500 TYR B 25 -164.78 -121.78 REMARK 500 TYR B 28 -33.55 -137.46 REMARK 500 PRO B 37 99.12 -52.71 REMARK 500 PHE B 46 -66.15 -27.33 REMARK 500 VAL B 47 -81.17 -36.67 REMARK 500 VAL B 55 120.08 -33.63 REMARK 500 LYS B 86 134.94 -25.75 REMARK 500 ASN B 88 39.47 -98.18 REMARK 500 ARG B 100 -79.95 -43.99 REMARK 500 ALA B 102 -79.62 -38.32 REMARK 500 PHE B 106 -72.97 -54.45 REMARK 500 ASN B 109 24.60 -142.92 REMARK 500 THR B 112 44.72 -101.40 REMARK 500 ASN B 116 -4.21 -52.90 REMARK 500 SER B 124 -4.35 -43.63 REMARK 500 ARG B 127 -19.08 -45.68 REMARK 500 SER B 130 -178.75 -61.66 REMARK 500 ALA K 6 -75.11 -61.37 REMARK 500 LYS K 7 -30.06 -39.96 REMARK 500 REMARK 500 THIS ENTRY HAS 104 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ELD B 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ELD L 134 DBREF 1RGB A 1 122 UNP P14420 PA21B_VIPAE 1 122 DBREF 1RGB B 1 122 UNP P14420 PA21B_VIPAE 1 122 DBREF 1RGB K 1 122 UNP P14420 PA21B_VIPAE 1 122 DBREF 1RGB L 1 122 UNP P14420 PA21B_VIPAE 1 122 SEQRES 1 A 122 ASN LEU PHE GLN PHE ALA LYS MET ILE ASN GLY LYS LEU SEQRES 2 A 122 GLY ALA PHE SER VAL TRP ASN TYR ILE SER TYR GLY CYS SEQRES 3 A 122 TYR CYS GLY TRP GLY GLY GLN GLY THR PRO LYS ASP ALA SEQRES 4 A 122 THR ASP ARG CYS CYS PHE VAL HIS ASP CYS CYS TYR GLY SEQRES 5 A 122 ARG VAL ARG GLY CYS ASN PRO LYS LEU ALA ILE TYR SER SEQRES 6 A 122 TYR SER PHE LYS LYS GLY ASN ILE VAL CYS GLY LYS ASN SEQRES 7 A 122 ASN GLY CYS LEU ARG ASP ILE CYS GLU CYS ASP ARG VAL SEQRES 8 A 122 ALA ALA ASN CYS PHE HIS GLN ASN LYS ASN THR TYR ASN SEQRES 9 A 122 LYS ASN TYR LYS PHE LEU SER SER SER ARG CYS ARG GLN SEQRES 10 A 122 THR SER GLU GLN CYS SEQRES 1 B 122 ASN LEU PHE GLN PHE ALA LYS MET ILE ASN GLY LYS LEU SEQRES 2 B 122 GLY ALA PHE SER VAL TRP ASN TYR ILE SER TYR GLY CYS SEQRES 3 B 122 TYR CYS GLY TRP GLY GLY GLN GLY THR PRO LYS ASP ALA SEQRES 4 B 122 THR ASP ARG CYS CYS PHE VAL HIS ASP CYS CYS TYR GLY SEQRES 5 B 122 ARG VAL ARG GLY CYS ASN PRO LYS LEU ALA ILE TYR SER SEQRES 6 B 122 TYR SER PHE LYS LYS GLY ASN ILE VAL CYS GLY LYS ASN SEQRES 7 B 122 ASN GLY CYS LEU ARG ASP ILE CYS GLU CYS ASP ARG VAL SEQRES 8 B 122 ALA ALA ASN CYS PHE HIS GLN ASN LYS ASN THR TYR ASN SEQRES 9 B 122 LYS ASN TYR LYS PHE LEU SER SER SER ARG CYS ARG GLN SEQRES 10 B 122 THR SER GLU GLN CYS SEQRES 1 K 122 ASN LEU PHE GLN PHE ALA LYS MET ILE ASN GLY LYS LEU SEQRES 2 K 122 GLY ALA PHE SER VAL TRP ASN TYR ILE SER TYR GLY CYS SEQRES 3 K 122 TYR CYS GLY TRP GLY GLY GLN GLY THR PRO LYS ASP ALA SEQRES 4 K 122 THR ASP ARG CYS CYS PHE VAL HIS ASP CYS CYS TYR GLY SEQRES 5 K 122 ARG VAL ARG GLY CYS ASN PRO LYS LEU ALA ILE TYR SER SEQRES 6 K 122 TYR SER PHE LYS LYS GLY ASN ILE VAL CYS GLY LYS ASN SEQRES 7 K 122 ASN GLY CYS LEU ARG ASP ILE CYS GLU CYS ASP ARG VAL SEQRES 8 K 122 ALA ALA ASN CYS PHE HIS GLN ASN LYS ASN THR TYR ASN SEQRES 9 K 122 LYS ASN TYR LYS PHE LEU SER SER SER ARG CYS ARG GLN SEQRES 10 K 122 THR SER GLU GLN CYS SEQRES 1 L 122 ASN LEU PHE GLN PHE ALA LYS MET ILE ASN GLY LYS LEU SEQRES 2 L 122 GLY ALA PHE SER VAL TRP ASN TYR ILE SER TYR GLY CYS SEQRES 3 L 122 TYR CYS GLY TRP GLY GLY GLN GLY THR PRO LYS ASP ALA SEQRES 4 L 122 THR ASP ARG CYS CYS PHE VAL HIS ASP CYS CYS TYR GLY SEQRES 5 L 122 ARG VAL ARG GLY CYS ASN PRO LYS LEU ALA ILE TYR SER SEQRES 6 L 122 TYR SER PHE LYS LYS GLY ASN ILE VAL CYS GLY LYS ASN SEQRES 7 L 122 ASN GLY CYS LEU ARG ASP ILE CYS GLU CYS ASP ARG VAL SEQRES 8 L 122 ALA ALA ASN CYS PHE HIS GLN ASN LYS ASN THR TYR ASN SEQRES 9 L 122 LYS ASN TYR LYS PHE LEU SER SER SER ARG CYS ARG GLN SEQRES 10 L 122 THR SER GLU GLN CYS HET ELD B 134 20 HET ELD L 134 20 HETNAM ELD (9E)-OCTADEC-9-ENAMIDE HETSYN ELD ELAIDOYLAMIDE FORMUL 5 ELD 2(C18 H35 N O) HELIX 1 1 ASN A 1 LEU A 13 1 13 HELIX 2 2 SER A 18 TYR A 22 5 5 HELIX 3 3 ALA A 40 VAL A 55 1 16 HELIX 4 4 GLY A 90 GLN A 108 1 19 HELIX 5 5 ASN A 114 LYS A 118 5 5 HELIX 6 6 LEU B 2 LYS B 12 1 11 HELIX 7 7 SER B 18 ILE B 23 5 6 HELIX 8 8 ASP B 39 VAL B 55 1 17 HELIX 9 9 PHE B 77 ASN B 81 5 5 HELIX 10 10 GLY B 90 GLN B 108 1 19 HELIX 11 11 ASN B 109 TYR B 113 5 5 HELIX 12 12 ASN B 114 LYS B 118 5 5 HELIX 13 13 SER B 121 ARG B 127 1 6 HELIX 14 14 ASN K 1 LEU K 13 1 13 HELIX 15 15 PHE K 17 TYR K 22 1 6 HELIX 16 16 ASP K 39 VAL K 55 1 17 HELIX 17 17 GLY K 90 ASN K 109 1 20 HELIX 18 18 SER K 121 ARG K 127 5 6 HELIX 19 19 ASN L 1 GLY L 14 1 14 HELIX 20 20 PHE L 17 TYR L 22 1 6 HELIX 21 21 ASP L 39 VAL L 55 1 17 HELIX 22 22 GLY L 90 ASN L 109 1 20 HELIX 23 23 ASN L 114 LYS L 118 5 5 HELIX 24 24 SER L 121 ARG L 127 5 6 SHEET 1 A 2 SER A 76 LYS A 78 0 SHEET 2 A 2 ASN A 81 VAL A 83 -1 O ASN A 81 N LYS A 78 SHEET 1 B 2 TYR B 75 SER B 76 0 SHEET 2 B 2 VAL B 83 CYS B 84 -1 O VAL B 83 N SER B 76 SHEET 1 C 2 TYR K 75 PHE K 77 0 SHEET 2 C 2 ILE K 82 CYS K 84 -1 O VAL K 83 N SER K 76 SSBOND 1 CYS A 27 CYS A 126 1555 1555 2.04 SSBOND 2 CYS A 29 CYS A 45 1555 1555 2.03 SSBOND 3 CYS A 44 CYS A 105 1555 1555 2.04 SSBOND 4 CYS A 50 CYS A 133 1555 1555 2.04 SSBOND 5 CYS A 51 CYS A 98 1555 1555 2.03 SSBOND 6 CYS A 61 CYS A 91 1555 1555 2.03 SSBOND 7 CYS A 84 CYS A 96 1555 1555 2.04 SSBOND 8 CYS B 27 CYS B 126 1555 1555 2.04 SSBOND 9 CYS B 29 CYS B 45 1555 1555 2.03 SSBOND 10 CYS B 44 CYS B 105 1555 1555 2.03 SSBOND 11 CYS B 50 CYS B 133 1555 1555 2.03 SSBOND 12 CYS B 51 CYS B 98 1555 1555 2.04 SSBOND 13 CYS B 61 CYS B 91 1555 1555 2.04 SSBOND 14 CYS B 84 CYS B 96 1555 1555 2.03 SSBOND 15 CYS K 27 CYS K 126 1555 1555 2.04 SSBOND 16 CYS K 29 CYS K 45 1555 1555 2.03 SSBOND 17 CYS K 44 CYS K 105 1555 1555 2.04 SSBOND 18 CYS K 50 CYS K 133 1555 1555 2.03 SSBOND 19 CYS K 51 CYS K 98 1555 1555 2.02 SSBOND 20 CYS K 61 CYS K 91 1555 1555 2.03 SSBOND 21 CYS K 84 CYS K 96 1555 1555 2.02 SSBOND 22 CYS L 27 CYS L 126 1555 1555 2.04 SSBOND 23 CYS L 29 CYS L 45 1555 1555 2.04 SSBOND 24 CYS L 44 CYS L 105 1555 1555 2.03 SSBOND 25 CYS L 50 CYS L 133 1555 1555 2.05 SSBOND 26 CYS L 51 CYS L 98 1555 1555 2.04 SSBOND 27 CYS L 61 CYS L 91 1555 1555 2.02 SSBOND 28 CYS L 84 CYS L 96 1555 1555 2.05 SITE 1 AC1 15 GLY A 30 TRP A 31 CYS A 45 HIS A 48 SITE 2 AC1 15 ASP A 49 LEU B 2 PHE B 5 TRP B 31 SITE 3 AC1 15 CYS B 44 CYS B 45 HIS B 48 ASP B 49 SITE 4 AC1 15 LYS B 69 ALA B 102 PHE B 106 SITE 1 AC2 17 LEU K 2 TYR K 28 CYS K 29 GLY K 30 SITE 2 AC2 17 TRP K 31 CYS K 45 HIS K 48 LYS K 69 SITE 3 AC2 17 LEU L 2 PHE L 5 TYR L 22 GLY L 30 SITE 4 AC2 17 TRP L 31 CYS L 44 CYS L 45 ALA L 102 SITE 5 AC2 17 PHE L 106 CRYST1 46.568 82.670 119.469 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021474 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012096 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008370 0.00000