HEADER DNA BINDING PROTEIN/DNA 13-NOV-03 1RH6 TITLE BACTERIOPHAGE LAMBDA EXCISIONASE (XIS)-DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*TP*AP*TP*GP*TP*AP*GP*TP*CP*TP*GP*TP*TP*G)-3'; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(P*CP*AP*AP*CP*AP*GP*AP*CP*TP*AP*CP*AP*TP*AP*G)-3'; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: EXCISIONASE; COMPND 11 CHAIN: A, B; COMPND 12 FRAGMENT: XIS DBD (RESIDUES 1-55); COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; SOURCE 7 ORGANISM_TAXID: 10710; SOURCE 8 GENE: XIS; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: RJ3386 (BL21-DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS PROTEIN-DNA COMPLEX, DNA ARCHITECTURAL PROTEIN, 'WINGED'-HELIX KEYWDS 2 PROTEIN, PHAGE EXCISION, SITE-SPECIFIC DNA RECOMBINATION, DNA KEYWDS 3 BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.D.SAM,D.CASCIO,R.C.JOHNSON,R.T.CLUBB REVDAT 5 14-FEB-24 1RH6 1 REMARK REVDAT 4 27-OCT-21 1RH6 1 REMARK SEQADV REVDAT 3 09-MAY-12 1RH6 1 REMARK VERSN REVDAT 2 24-FEB-09 1RH6 1 VERSN REVDAT 1 29-JUN-04 1RH6 0 JRNL AUTH M.D.SAM,D.CASCIO,R.C.JOHNSON,R.T.CLUBB JRNL TITL CRYSTAL STRUCTURE OF THE EXCISIONASE-DNA COMPLEX FROM JRNL TITL 2 BACTERIOPHAGE LAMBDA. JRNL REF J.MOL.BIOL. V. 338 229 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15066428 JRNL DOI 10.1016/J.JMB.2004.02.053 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 21990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1161 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1613 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 931 REMARK 3 NUCLEIC ACID ATOMS : 574 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.63000 REMARK 3 B22 (A**2) : -1.23000 REMARK 3 B33 (A**2) : -1.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.618 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1598 ; 0.025 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1173 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2278 ; 2.582 ; 2.397 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2752 ; 1.202 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 105 ; 6.203 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 215 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1329 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 241 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 239 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1286 ; 0.250 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 773 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 95 ; 0.238 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.297 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 95 ; 0.420 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.247 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 539 ; 1.471 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 882 ; 2.464 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1059 ; 3.102 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1396 ; 4.492 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1RH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000020742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32190 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 93.10 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.05000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 95.80 REMARK 200 R MERGE FOR SHELL (I) : 0.13500 REMARK 200 R SYM FOR SHELL (I) : 0.15200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NAOAC, IMIDAZOLE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.10750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.34550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.10750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.34550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC C 1 REMARK 465 DG D 30 REMARK 465 ASN B 53 REMARK 465 ARG B 54 REMARK 465 PRO B 55 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 55 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 DC D 19 O HOH D 51 1.69 REMARK 500 OP2 DA D 20 O HOH D 122 1.84 REMARK 500 NH2 ARG B 26 O HOH B 100 2.02 REMARK 500 O HOH D 31 O HOH D 117 2.16 REMARK 500 O HOH C 23 O HOH B 115 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 13 O HOH C 36 4545 1.81 REMARK 500 OE2 GLU A 27 O HOH B 122 4556 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 4 O3' DG C 5 P -0.075 REMARK 500 DG C 5 C8 DG C 5 N9 0.051 REMARK 500 DA C 7 O3' DA C 7 C3' -0.041 REMARK 500 DG C 8 C2 DG C 8 N3 0.059 REMARK 500 DG C 12 C6 DG C 12 O6 0.071 REMARK 500 DT C 14 C6 DT C 14 N1 -0.049 REMARK 500 DC D 16 O3' DC D 16 C3' -0.051 REMARK 500 DC D 19 P DC D 19 O5' 0.076 REMARK 500 DG D 21 C6 DG D 21 N1 -0.044 REMARK 500 DA D 22 O3' DA D 22 C3' -0.056 REMARK 500 DA D 22 C4 DA D 22 C5 -0.051 REMARK 500 DT D 24 P DT D 24 O5' 0.106 REMARK 500 DA D 25 P DA D 25 O5' 0.067 REMARK 500 DA D 25 C5' DA D 25 C4' 0.048 REMARK 500 VAL A 21 CB VAL A 21 CG1 0.146 REMARK 500 GLU A 40 CD GLU A 40 OE2 0.076 REMARK 500 ARG B 13 CG ARG B 13 CD -0.239 REMARK 500 GLU B 40 CD GLU B 40 OE2 0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 2 N1 - C1' - C2' ANGL. DEV. = 8.9 DEGREES REMARK 500 DA C 3 N9 - C4 - C5 ANGL. DEV. = -3.3 DEGREES REMARK 500 DA C 3 N1 - C6 - N6 ANGL. DEV. = 5.0 DEGREES REMARK 500 DA C 3 C5 - C6 - N6 ANGL. DEV. = -6.2 DEGREES REMARK 500 DT C 4 O5' - P - OP2 ANGL. DEV. = -6.7 DEGREES REMARK 500 DT C 4 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG C 5 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG C 5 N1 - C6 - O6 ANGL. DEV. = -4.1 DEGREES REMARK 500 DT C 6 O3' - P - OP2 ANGL. DEV. = 6.9 DEGREES REMARK 500 DT C 6 O4' - C1' - N1 ANGL. DEV. = -5.2 DEGREES REMARK 500 DA C 7 O4' - C1' - N9 ANGL. DEV. = 8.1 DEGREES REMARK 500 DA C 7 C6 - N1 - C2 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG C 8 O4' - C4' - C3' ANGL. DEV. = -4.5 DEGREES REMARK 500 DG C 8 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DG C 8 C4' - C3' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG C 8 C6 - N1 - C2 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG C 8 N1 - C2 - N3 ANGL. DEV. = -4.1 DEGREES REMARK 500 DG C 8 N3 - C4 - C5 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG C 8 C4 - C5 - N7 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG C 8 N3 - C2 - N2 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG C 8 N1 - C6 - O6 ANGL. DEV. = 5.4 DEGREES REMARK 500 DG C 8 C5 - C6 - O6 ANGL. DEV. = -4.7 DEGREES REMARK 500 DC C 10 C2 - N3 - C4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT C 11 N3 - C4 - O4 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG C 12 OP1 - P - OP2 ANGL. DEV. = 10.3 DEGREES REMARK 500 DG C 12 O5' - P - OP2 ANGL. DEV. = -9.4 DEGREES REMARK 500 DG C 12 O4' - C1' - N9 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG C 12 C2 - N3 - C4 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG C 12 N1 - C6 - O6 ANGL. DEV. = -4.3 DEGREES REMARK 500 DT C 13 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT C 13 O4' - C1' - N1 ANGL. DEV. = -4.3 DEGREES REMARK 500 DT C 13 C5 - C4 - O4 ANGL. DEV. = -4.6 DEGREES REMARK 500 DT C 13 C4 - C5 - C7 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT C 14 C6 - N1 - C2 ANGL. DEV. = -3.1 DEGREES REMARK 500 DT C 14 N1 - C2 - N3 ANGL. DEV. = -3.7 DEGREES REMARK 500 DT C 14 C2 - N3 - C4 ANGL. DEV. = 7.1 DEGREES REMARK 500 DT C 14 C4 - C5 - C6 ANGL. DEV. = -4.1 DEGREES REMARK 500 DT C 14 C5 - C6 - N1 ANGL. DEV. = 6.2 DEGREES REMARK 500 DT C 14 N3 - C2 - O2 ANGL. DEV. = 4.9 DEGREES REMARK 500 DT C 14 N3 - C4 - O4 ANGL. DEV. = 9.5 DEGREES REMARK 500 DT C 14 C5 - C4 - O4 ANGL. DEV. = -6.9 DEGREES REMARK 500 DG C 15 C6 - N1 - C2 ANGL. DEV. = -3.7 DEGREES REMARK 500 DG C 15 N1 - C2 - N3 ANGL. DEV. = 7.1 DEGREES REMARK 500 DG C 15 C2 - N3 - C4 ANGL. DEV. = -6.3 DEGREES REMARK 500 DG C 15 C5 - N7 - C8 ANGL. DEV. = -3.1 DEGREES REMARK 500 DG C 15 N3 - C4 - N9 ANGL. DEV. = -3.7 DEGREES REMARK 500 DG C 15 N3 - C2 - N2 ANGL. DEV. = -7.1 DEGREES REMARK 500 DC D 16 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA D 17 O4' - C1' - N9 ANGL. DEV. = -4.5 DEGREES REMARK 500 DA D 18 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 85 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1RH6 A 1 55 UNP P03699 VXIS_LAMBD 1 55 DBREF 1RH6 B 1 55 UNP P03699 VXIS_LAMBD 1 55 DBREF 1RH6 C 1 15 PDB 1RH6 1RH6 1 15 DBREF 1RH6 D 16 30 PDB 1RH6 1RH6 16 30 SEQADV 1RH6 SER A 28 UNP P03699 CYS 28 ENGINEERED MUTATION SEQADV 1RH6 SER B 28 UNP P03699 CYS 28 ENGINEERED MUTATION SEQRES 1 C 15 DC DT DA DT DG DT DA DG DT DC DT DG DT SEQRES 2 C 15 DT DG SEQRES 1 D 15 DC DA DA DC DA DG DA DC DT DA DC DA DT SEQRES 2 D 15 DA DG SEQRES 1 A 55 MET TYR LEU THR LEU GLN GLU TRP ASN ALA ARG GLN ARG SEQRES 2 A 55 ARG PRO ARG SER LEU GLU THR VAL ARG ARG TRP VAL ARG SEQRES 3 A 55 GLU SER ARG ILE PHE PRO PRO PRO VAL LYS ASP GLY ARG SEQRES 4 A 55 GLU TYR LEU PHE HIS GLU SER ALA VAL LYS VAL ASP LEU SEQRES 5 A 55 ASN ARG PRO SEQRES 1 B 55 MET TYR LEU THR LEU GLN GLU TRP ASN ALA ARG GLN ARG SEQRES 2 B 55 ARG PRO ARG SER LEU GLU THR VAL ARG ARG TRP VAL ARG SEQRES 3 B 55 GLU SER ARG ILE PHE PRO PRO PRO VAL LYS ASP GLY ARG SEQRES 4 B 55 GLU TYR LEU PHE HIS GLU SER ALA VAL LYS VAL ASP LEU SEQRES 5 B 55 ASN ARG PRO FORMUL 5 HOH *152(H2 O) HELIX 1 1 THR A 4 ARG A 11 1 8 HELIX 2 2 SER A 17 GLU A 27 1 11 HELIX 3 3 LEU B 5 GLN B 12 1 8 HELIX 4 4 SER B 17 GLU B 27 1 11 SHEET 1 A 3 TYR A 2 LEU A 3 0 SHEET 2 A 3 GLU A 40 HIS A 44 -1 O PHE A 43 N LEU A 3 SHEET 3 A 3 VAL A 35 ASP A 37 -1 N VAL A 35 O LEU A 42 SHEET 1 B 2 ILE A 30 PHE A 31 0 SHEET 2 B 2 VAL A 48 LYS A 49 -1 O VAL A 48 N PHE A 31 SHEET 1 C 3 TYR B 2 THR B 4 0 SHEET 2 C 3 GLU B 40 HIS B 44 -1 O PHE B 43 N LEU B 3 SHEET 3 C 3 VAL B 35 ASP B 37 -1 N ASP B 37 O GLU B 40 SHEET 1 D 2 ILE B 30 PHE B 31 0 SHEET 2 D 2 VAL B 48 LYS B 49 -1 O VAL B 48 N PHE B 31 CISPEP 1 PHE A 31 PRO A 32 0 -7.30 CISPEP 2 PHE B 31 PRO B 32 0 -0.78 CRYST1 80.215 72.691 38.801 90.00 104.11 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012466 0.000000 0.003134 0.00000 SCALE2 0.000000 0.013757 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026575 0.00000