HEADER LECTIN 27-JAN-93 1RIN TITLE X-RAY CRYSTAL STRUCTURE OF A PEA LECTIN-TRIMANNOSIDE COMPLEX AT 2.6 TITLE 2 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEA LECTIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PEA LECTIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PISUM SATIVUM; SOURCE 3 ORGANISM_COMMON: PEA; SOURCE 4 ORGANISM_TAXID: 3888; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: PISUM SATIVUM; SOURCE 7 ORGANISM_COMMON: PEA; SOURCE 8 ORGANISM_TAXID: 3888 KEYWDS LECTIN EXPDTA X-RAY DIFFRACTION AUTHOR J.M.RINI,K.D.HARDMAN,H.EINSPAHR,F.L.SUDDATH,J.P.CARVER REVDAT 6 14-FEB-24 1RIN 1 HETSYN REVDAT 5 29-JUL-20 1RIN 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 13-JUL-11 1RIN 1 VERSN REVDAT 3 24-FEB-09 1RIN 1 VERSN REVDAT 2 01-APR-03 1RIN 1 JRNL REVDAT 1 31-OCT-93 1RIN 0 JRNL AUTH J.M.RINI,K.D.HARDMAN,H.EINSPAHR,F.L.SUDDATH,J.P.CARVER JRNL TITL X-RAY CRYSTAL STRUCTURE OF A PEA LECTIN-TRIMANNOSIDE COMPLEX JRNL TITL 2 AT 2.6 A RESOLUTION. JRNL REF J.BIOL.CHEM. V. 268 10126 1993 JRNL REFN ISSN 0021-9258 JRNL PMID 8486683 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.M.RINI,J.P.CARVER,K.D.HARDMAN REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF REMARK 1 TITL 2 A PEA LECTIN-METHYL REMARK 1 TITL 3 3,6-DI-O(ALPHA-D-MANNOPYRANOSYL)-ALPHA-D-MANNOPYRANOSIDE REMARK 1 TITL 4 COMPLEX REMARK 1 REF J.MOL.BIOL. V. 189 259 1986 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3563 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 2.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RIN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176099. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.15000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 235 REMARK 465 THR B 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 230 NE2 HIS B 230 CD2 -0.067 REMARK 500 HIS C 51 NE2 HIS C 51 CD2 -0.072 REMARK 500 HIS C 136 NE2 HIS C 136 CD2 -0.071 REMARK 500 HIS D 222 NE2 HIS D 222 CD2 -0.070 REMARK 500 HIS D 230 NE2 HIS D 230 CD2 -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 53 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP A 53 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 55 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 TRP A 128 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 128 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP A 128 CG - CD2 - CE3 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 TRP A 152 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 152 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 TRP B 206 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP B 206 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP B 227 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP B 227 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG C 43 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG C 43 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 TRP C 53 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP C 53 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 TYR C 109 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 TRP C 128 CD1 - CG - CD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 TRP C 128 CE2 - CD2 - CG ANGL. DEV. = -6.8 DEGREES REMARK 500 TRP C 128 CG - CD2 - CE3 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP C 152 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP C 152 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 TRP D 206 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP D 206 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP D 227 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TRP D 227 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 SER D 234 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 14 72.19 -118.19 REMARK 500 THR A 27 -166.35 -120.65 REMARK 500 GLU A 29 -55.72 81.75 REMARK 500 ASN A 39 61.41 39.17 REMARK 500 SER A 76 1.87 -66.30 REMARK 500 GLN A 95 -148.30 -102.75 REMARK 500 LEU A 101 11.71 57.10 REMARK 500 TRP A 128 -18.89 -144.93 REMARK 500 GLU C 29 -38.41 87.72 REMARK 500 GLN C 95 -159.04 -94.25 REMARK 500 TRP C 128 -20.75 -154.02 REMARK 500 ARG C 133 6.59 58.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ELECTRON DENSITY FOR ONE TERMINAL MANNOSE RESIDUE OF THE REMARK 600 TRISACCHARIDE IS SEEN IN EACH OF THE BINDING SITES OF THE REMARK 600 DIMER. SEE *SITE* RECORDS BELOW. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 240 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 119 OE2 REMARK 620 2 ASP A 121 OD2 95.6 REMARK 620 3 ASP A 129 OD1 174.2 84.3 REMARK 620 4 HIS A 136 NE2 82.2 101.4 103.5 REMARK 620 5 HOH A 251 O 94.4 167.9 85.1 86.8 REMARK 620 6 HOH A 252 O 87.8 88.4 86.4 166.7 85.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 243 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 121 OD1 REMARK 620 2 ASP A 121 OD2 53.8 REMARK 620 3 PHE A 123 O 73.9 115.2 REMARK 620 4 ASN A 125 OD1 159.0 146.2 93.4 REMARK 620 5 ASP A 129 OD2 109.8 85.6 78.2 83.1 REMARK 620 6 HOH A 253 O 121.5 75.6 164.0 73.0 91.4 REMARK 620 7 HOH A 254 O 76.1 111.6 86.1 86.6 160.6 101.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 240 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 119 OE2 REMARK 620 2 ASP C 121 OD2 90.2 REMARK 620 3 ASP C 129 OD1 168.3 88.2 REMARK 620 4 HIS C 136 NE2 92.8 97.3 98.9 REMARK 620 5 HOH C 341 O 88.1 178.3 93.3 83.2 REMARK 620 6 HOH C 342 O 86.3 93.0 82.2 169.7 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 243 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 121 OD1 REMARK 620 2 ASP C 121 OD2 52.2 REMARK 620 3 PHE C 123 O 78.1 110.2 REMARK 620 4 ASN C 125 OD1 152.2 155.4 86.4 REMARK 620 5 ASP C 129 OD2 110.6 79.1 76.7 87.7 REMARK 620 6 HOH C 343 O 120.7 82.1 160.8 77.6 91.9 REMARK 620 7 HOH C 344 O 73.4 113.9 88.8 83.5 163.5 99.8 REMARK 620 N 1 2 3 4 5 6 DBREF 1RIN A 1 180 UNP P02867 LEC_PEA 31 210 DBREF 1RIN B 188 236 UNP P02867 LEC_PEA 218 266 DBREF 1RIN C 1 180 UNP P02867 LEC_PEA 31 210 DBREF 1RIN D 188 236 UNP P02867 LEC_PEA 218 266 SEQADV 1RIN GLU A 114 UNP P02867 GLN 144 CONFLICT SEQADV 1RIN GLU C 114 UNP P02867 GLN 144 CONFLICT SEQRES 1 A 180 THR GLU THR THR SER PHE LEU ILE THR LYS PHE SER PRO SEQRES 2 A 180 ASP GLN GLN ASN LEU ILE PHE GLN GLY ASP GLY TYR THR SEQRES 3 A 180 THR LYS GLU LYS LEU THR LEU THR LYS ALA VAL LYS ASN SEQRES 4 A 180 THR VAL GLY ARG ALA LEU TYR SER SER PRO ILE HIS ILE SEQRES 5 A 180 TRP ASP ARG GLU THR GLY ASN VAL ALA ASN PHE VAL THR SEQRES 6 A 180 SER PHE THR PHE VAL ILE ASN ALA PRO ASN SER TYR ASN SEQRES 7 A 180 VAL ALA ASP GLY PHE THR PHE PHE ILE ALA PRO VAL ASP SEQRES 8 A 180 THR LYS PRO GLN THR GLY GLY GLY TYR LEU GLY VAL PHE SEQRES 9 A 180 ASN SER ALA GLU TYR ASP LYS THR THR GLU THR VAL ALA SEQRES 10 A 180 VAL GLU PHE ASP THR PHE TYR ASN ALA ALA TRP ASP PRO SEQRES 11 A 180 SER ASN ARG ASP ARG HIS ILE GLY ILE ASP VAL ASN SER SEQRES 12 A 180 ILE LYS SER VAL ASN THR LYS SER TRP LYS LEU GLN ASN SEQRES 13 A 180 GLY GLU GLU ALA ASN VAL VAL ILE ALA PHE ASN ALA ALA SEQRES 14 A 180 THR ASN VAL LEU THR VAL SER LEU THR TYR PRO SEQRES 1 B 49 VAL THR SER TYR THR LEU SER ASP VAL VAL SER LEU LYS SEQRES 2 B 49 ASP VAL VAL PRO GLU TRP VAL ARG ILE GLY PHE SER ALA SEQRES 3 B 49 THR THR GLY ALA GLU TYR ALA ALA HIS GLU VAL LEU SER SEQRES 4 B 49 TRP SER PHE HIS SER GLU LEU SER GLY THR SEQRES 1 C 180 THR GLU THR THR SER PHE LEU ILE THR LYS PHE SER PRO SEQRES 2 C 180 ASP GLN GLN ASN LEU ILE PHE GLN GLY ASP GLY TYR THR SEQRES 3 C 180 THR LYS GLU LYS LEU THR LEU THR LYS ALA VAL LYS ASN SEQRES 4 C 180 THR VAL GLY ARG ALA LEU TYR SER SER PRO ILE HIS ILE SEQRES 5 C 180 TRP ASP ARG GLU THR GLY ASN VAL ALA ASN PHE VAL THR SEQRES 6 C 180 SER PHE THR PHE VAL ILE ASN ALA PRO ASN SER TYR ASN SEQRES 7 C 180 VAL ALA ASP GLY PHE THR PHE PHE ILE ALA PRO VAL ASP SEQRES 8 C 180 THR LYS PRO GLN THR GLY GLY GLY TYR LEU GLY VAL PHE SEQRES 9 C 180 ASN SER ALA GLU TYR ASP LYS THR THR GLU THR VAL ALA SEQRES 10 C 180 VAL GLU PHE ASP THR PHE TYR ASN ALA ALA TRP ASP PRO SEQRES 11 C 180 SER ASN ARG ASP ARG HIS ILE GLY ILE ASP VAL ASN SER SEQRES 12 C 180 ILE LYS SER VAL ASN THR LYS SER TRP LYS LEU GLN ASN SEQRES 13 C 180 GLY GLU GLU ALA ASN VAL VAL ILE ALA PHE ASN ALA ALA SEQRES 14 C 180 THR ASN VAL LEU THR VAL SER LEU THR TYR PRO SEQRES 1 D 49 VAL THR SER TYR THR LEU SER ASP VAL VAL SER LEU LYS SEQRES 2 D 49 ASP VAL VAL PRO GLU TRP VAL ARG ILE GLY PHE SER ALA SEQRES 3 D 49 THR THR GLY ALA GLU TYR ALA ALA HIS GLU VAL LEU SER SEQRES 4 D 49 TRP SER PHE HIS SER GLU LEU SER GLY THR HET MAN A 250 12 HET MN A 240 1 HET CA A 243 1 HET MAN C 250 12 HET MN C 240 1 HET CA C 243 1 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 5 MAN 2(C6 H12 O6) FORMUL 6 MN 2(MN 2+) FORMUL 7 CA 2(CA 2+) FORMUL 11 HOH *87(H2 O) HELIX 1 1 GLY A 97 LEU A 101 5 5 HELIX 2 2 ASP A 110 GLU A 114 5 5 HELIX 3 3 SER B 198 VAL B 203 1 6 HELIX 4 4 GLY C 97 LEU C 101 5 5 HELIX 5 5 SER D 198 VAL D 203 1 6 SHEET 1 A 7 ASN A 148 SER A 151 0 SHEET 2 A 7 HIS A 136 VAL A 141 -1 N ILE A 137 O LYS A 150 SHEET 3 A 7 VAL A 116 ASP A 121 -1 O ALA A 117 N ASP A 140 SHEET 4 A 7 GLY A 82 PRO A 89 -1 O PHE A 83 N PHE A 120 SHEET 5 A 7 TRP B 206 THR B 214 -1 N ARG B 208 O ALA A 88 SHEET 6 A 7 VAL A 41 TYR A 46 -1 N GLY A 42 O ALA B 213 SHEET 7 A 7 LEU A 18 GLY A 22 -1 N ILE A 19 O LEU A 45 SHEET 1 B 6 ASN A 148 SER A 151 0 SHEET 2 B 6 HIS A 136 VAL A 141 -1 N ILE A 137 O LYS A 150 SHEET 3 B 6 VAL A 116 ASP A 121 -1 O ALA A 117 N ASP A 140 SHEET 4 B 6 GLY A 82 PRO A 89 -1 O PHE A 83 N PHE A 120 SHEET 5 B 6 TRP B 206 THR B 214 -1 N ARG B 208 O ALA A 88 SHEET 6 B 6 ILE A 50 HIS A 51 -1 N ILE A 50 O VAL B 207 SHEET 1 C 7 ASN C 148 SER C 151 0 SHEET 2 C 7 HIS C 136 VAL C 141 -1 N ILE C 137 O LYS C 150 SHEET 3 C 7 VAL C 116 ASP C 121 -1 N ALA C 117 O ASP C 140 SHEET 4 C 7 GLY C 82 ALA C 88 -1 O PHE C 83 N PHE C 120 SHEET 5 C 7 TRP D 206 THR D 214 -1 O ARG D 208 N ALA C 88 SHEET 6 C 7 VAL C 41 TYR C 46 -1 N GLY C 42 O ALA D 213 SHEET 7 C 7 LEU C 18 GLY C 22 -1 N ILE C 19 O LEU C 45 SHEET 1 D 6 ASN C 148 SER C 151 0 SHEET 2 D 6 HIS C 136 VAL C 141 -1 N ILE C 137 O LYS C 150 SHEET 3 D 6 VAL C 116 ASP C 121 -1 N ALA C 117 O ASP C 140 SHEET 4 D 6 GLY C 82 ALA C 88 -1 O PHE C 83 N PHE C 120 SHEET 5 D 6 TRP D 206 THR D 214 -1 O ARG D 208 N ALA C 88 SHEET 6 D 6 ILE C 50 HIS C 51 -1 N ILE C 50 O VAL D 207 LINK OE2 GLU A 119 MN MN A 240 1555 1555 2.21 LINK OD2 ASP A 121 MN MN A 240 1555 1555 2.15 LINK OD1 ASP A 121 CA CA A 243 1555 1555 2.32 LINK OD2 ASP A 121 CA CA A 243 1555 1555 2.45 LINK O PHE A 123 CA CA A 243 1555 1555 2.25 LINK OD1 ASN A 125 CA CA A 243 1555 1555 2.47 LINK OD1 ASP A 129 MN MN A 240 1555 1555 2.28 LINK OD2 ASP A 129 CA CA A 243 1555 1555 2.31 LINK NE2 HIS A 136 MN MN A 240 1555 1555 2.34 LINK MN MN A 240 O HOH A 251 1555 1555 2.20 LINK MN MN A 240 O HOH A 252 1555 1555 2.06 LINK CA CA A 243 O HOH A 253 1555 1555 2.44 LINK CA CA A 243 O HOH A 254 1555 1555 2.39 LINK OE2 GLU C 119 MN MN C 240 1555 1555 2.18 LINK OD2 ASP C 121 MN MN C 240 1555 1555 2.11 LINK OD1 ASP C 121 CA CA C 243 1555 1555 2.40 LINK OD2 ASP C 121 CA CA C 243 1555 1555 2.55 LINK O PHE C 123 CA CA C 243 1555 1555 2.37 LINK OD1 ASN C 125 CA CA C 243 1555 1555 2.49 LINK OD1 ASP C 129 MN MN C 240 1555 1555 2.29 LINK OD2 ASP C 129 CA CA C 243 1555 1555 2.45 LINK NE2 HIS C 136 MN MN C 240 1555 1555 2.27 LINK MN MN C 240 O HOH C 341 1555 1555 2.05 LINK MN MN C 240 O HOH C 342 1555 1555 2.26 LINK CA CA C 243 O HOH C 343 1555 1555 2.33 LINK CA CA C 243 O HOH C 344 1555 1555 2.38 CISPEP 1 ALA A 80 ASP A 81 0 -7.37 CISPEP 2 ALA C 80 ASP C 81 0 -4.72 CRYST1 64.300 73.400 108.500 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015552 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009217 0.00000