HEADER TRANSFERASE 18-NOV-03 1RJA TITLE SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF THE NONRECEPTOR TYROSINE TITLE 2 KINASE PTK6/BRK SH2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH2 DOMAIN; COMPND 5 SYNONYM: BREAST TUMOR KINASE, TYROSINE-PROTEIN KINASE BRK, PTK6/BRK; COMPND 6 EC: 2.7.1.112; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX 4T-3 KEYWDS HUMAN PROTEIN TYROSINE KINASE-6 (PTK6/BRK), SRC HOMOLOGY 2(SH2) KEYWDS 2 DOMAIN, SOLUTION STRUCTURE, BACKBONE DYNAMICS, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 21 MDLTYP MINIMIZED AVERAGE AUTHOR E.HONG,J.SHIN,W.LEE REVDAT 3 10-AUG-11 1RJA 1 SOURCE VERSN REVDAT 2 24-FEB-09 1RJA 1 VERSN REVDAT 1 20-JUL-04 1RJA 0 JRNL AUTH E.HONG,J.SHIN,H.I.KIM,S.T.LEE,W.LEE JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF THE NON-RECEPTOR JRNL TITL 2 PROTEIN-TYROSINE KINASE-6 SRC HOMOLOGY 2 DOMAIN JRNL REF J.BIOL.CHEM. V. 279 29700 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15056653 JRNL DOI 10.1074/JBC.M313185200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.HONG,J.SHIN,E.BANG,M.H.KIM,S.T.LEE,W.LEE REMARK 1 TITL LETTER TO THE EDITOR: COMPLETE SEQUENCE-SPECIFIC 1H, 13C AND REMARK 1 TITL 2 15N RESONANCE ASSIGNMENTS OF THE HUMAN PTK6 SH2 DOMAIN REMARK 1 REF J.BIOMOL.NMR V. 19 291 2001 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1011221125013 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RJA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-NOV-03. REMARK 100 THE RCSB ID CODE IS RCSB020796. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 1MM SH2 DOMAIN U-15N; 50MM REMARK 210 PHOSPAHTE BUFFER NA; 90% H2O, 10% REMARK 210 D2O; 1MM SH2 DOMAIN U-15N, 13C; REMARK 210 50MM PHOSPAHTE BUFFER NA; 90% REMARK 210 H2O, 10% D2O; 1MM SH2 DOMAIN U- REMARK 210 15N, 13C; 50MM PHOSPAHTE BUFFER REMARK 210 NA; 100% D2O; 1MM SH2 DOMAIN U- REMARK 210 13C; 50MM PHOSPAHTE BUFFER NA; REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 1.8, SPARKY REMARK 210 3.106, INSIGHTII 98 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H PHE A 6 O ILE A 30 1.58 REMARK 500 OD1 ASN A 23 H ARG A 97 1.58 REMARK 500 H VAL A 44 O ARG A 51 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 107.51 -178.54 REMARK 500 1 TRP A 4 86.27 85.34 REMARK 500 1 ALA A 20 169.27 -42.12 REMARK 500 1 ALA A 24 46.81 -92.45 REMARK 500 1 THR A 25 126.55 79.18 REMARK 500 1 ARG A 31 -168.68 -112.75 REMARK 500 1 PRO A 36 -156.24 -59.35 REMARK 500 1 ALA A 38 62.92 36.85 REMARK 500 1 ASP A 46 -90.27 55.46 REMARK 500 1 THR A 47 17.44 -149.25 REMARK 500 1 GLN A 48 -90.19 175.83 REMARK 500 1 ALA A 49 -168.64 -62.05 REMARK 500 1 ARG A 58 30.91 -91.25 REMARK 500 1 ALA A 59 77.36 41.03 REMARK 500 1 ARG A 62 113.53 -171.14 REMARK 500 1 LEU A 86 -89.68 -40.22 REMARK 500 1 LEU A 90 115.59 -166.63 REMARK 500 1 LEU A 92 170.71 -46.02 REMARK 500 1 ALA A 93 -84.88 -152.38 REMARK 500 1 LYS A 98 -153.99 -132.88 REMARK 500 2 GLU A 2 75.02 -178.78 REMARK 500 2 TRP A 4 90.92 75.76 REMARK 500 2 ALA A 20 173.86 -48.19 REMARK 500 2 THR A 25 141.97 56.63 REMARK 500 2 SER A 33 101.81 -53.00 REMARK 500 2 PRO A 36 -162.99 -57.73 REMARK 500 2 ASP A 46 -95.81 53.55 REMARK 500 2 GLN A 48 -73.80 -161.81 REMARK 500 2 ALA A 49 -173.10 -66.52 REMARK 500 2 ARG A 62 110.17 173.88 REMARK 500 2 GLU A 67 21.72 -79.75 REMARK 500 2 ALA A 68 13.46 -148.02 REMARK 500 2 LEU A 72 -39.21 -24.16 REMARK 500 2 LEU A 92 96.78 -46.73 REMARK 500 2 ALA A 93 -79.64 -90.28 REMARK 500 2 LYS A 98 -83.30 -138.81 REMARK 500 3 TRP A 4 93.97 76.23 REMARK 500 3 ALA A 20 172.09 -45.98 REMARK 500 3 ALA A 24 61.07 -108.63 REMARK 500 3 THR A 25 137.93 60.94 REMARK 500 3 SER A 33 91.05 -51.87 REMARK 500 3 PRO A 36 -176.80 -54.95 REMARK 500 3 SER A 37 -93.06 -84.17 REMARK 500 3 ALA A 38 61.83 -114.16 REMARK 500 3 ASP A 39 -161.62 -126.76 REMARK 500 3 ASP A 46 26.86 42.89 REMARK 500 3 THR A 47 -27.25 102.10 REMARK 500 3 GLN A 48 -114.01 -158.79 REMARK 500 3 ARG A 58 37.59 -92.01 REMARK 500 3 ALA A 59 73.07 45.49 REMARK 500 REMARK 500 THIS ENTRY HAS 429 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4902 RELATED DB: BMRB DBREF 1RJA A 1 100 UNP Q13882 PTK6_HUMAN 75 174 SEQRES 1 A 100 SER GLU PRO TRP PHE PHE GLY CYS ILE SER ARG SER GLU SEQRES 2 A 100 ALA VAL ARG ARG LEU GLN ALA GLU GLY ASN ALA THR GLY SEQRES 3 A 100 ALA PHE LEU ILE ARG VAL SER GLU LYS PRO SER ALA ASP SEQRES 4 A 100 TYR VAL LEU SER VAL ARG ASP THR GLN ALA VAL ARG HIS SEQRES 5 A 100 TYR LYS ILE TRP ARG ARG ALA GLY GLY ARG LEU HIS LEU SEQRES 6 A 100 ASN GLU ALA VAL SER PHE LEU SER LEU PRO GLU LEU VAL SEQRES 7 A 100 ASN TYR HIS ARG ALA GLN SER LEU SER HIS GLY LEU ARG SEQRES 8 A 100 LEU ALA ALA PRO CYS ARG LYS HIS GLU HELIX 1 1 SER A 10 GLN A 19 1 10 HELIX 2 2 SER A 73 GLN A 84 1 12 SHEET 1 A 5 PHE A 28 VAL A 32 0 SHEET 2 A 5 TYR A 40 VAL A 44 -1 O VAL A 41 N ARG A 31 SHEET 3 A 5 ARG A 51 ARG A 57 -1 O ARG A 51 N VAL A 44 SHEET 4 A 5 LEU A 63 ASN A 66 -1 O HIS A 64 N TRP A 56 SHEET 5 A 5 VAL A 69 PHE A 71 -1 O PHE A 71 N LEU A 63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1