data_1RK3
#
_entry.id 1RK3
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.376
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1RK3 pdb_00001rk3 10.2210/pdb1rk3/pdb
RCSB RCSB020824 ? ?
WWPDB D_1000020824 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 1RJK 'same protein complexed with 2MD [2-methylene-19-nor-(20S)-1alpha,25-dihydroxyvitamin D3]' unspecified
PDB 1RKG 'same protein complexed with 2MbisP [1alpha-hydroxy-2-methylene-19-nor-(20S)-bishomopregnacalciferol]' unspecified
PDB 1RKH 'same protein complexed with 2AM20R [2alpha-methyl-19-nor-1,25-dihydroxyvitamin D3]' unspecified
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1RK3
_pdbx_database_status.recvd_initial_deposition_date 2003-11-20
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Vanhooke, J.L.' 1
'M Benning, M.' 2
'Bauer, C.B.' 3
'Pike, J.W.' 4
'DeLuca, H.F.' 5
#
_citation.id primary
_citation.title
;Molecular Structure of the Rat Vitamin D Receptor Ligand Binding Domain Complexed with 2-Carbon-Substituted Vitamin D(3) Hormone Analogues and a LXXLL-Containing Coactivator Peptide
;
_citation.journal_abbrev Biochemistry
_citation.journal_volume 43
_citation.page_first 4101
_citation.page_last 4110
_citation.year 2004
_citation.journal_id_ASTM BICHAW
_citation.country US
_citation.journal_id_ISSN 0006-2960
_citation.journal_id_CSD 0033
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 15065852
_citation.pdbx_database_id_DOI 10.1021/bi036056y
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Vanhooke, J.L.' 1 ?
primary 'Benning, M.M.' 2 ?
primary 'Bauer, C.B.' 3 ?
primary 'Pike, J.W.' 4 ?
primary 'DeLuca, H.F.' 5 ?
#
_cell.entry_id 1RK3
_cell.length_a 154.726
_cell.length_b 44.154
_cell.length_c 42.072
_cell.angle_alpha 90.00
_cell.angle_beta 96.13
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1RK3
_symmetry.space_group_name_H-M 'C 1 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 5
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'Vitamin D3 receptor' 32983.730 1 ? 'Chain A, DEL(165-211)' 'ligand binding domain' ?
2 polymer syn 'Peroxisome proliferator-activated receptor binding protein' 1570.898 1 ? ?
'DRIP 205 NR2 box peptide' ?
3 non-polymer syn
'5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL' 416.636
1 ? ? ? ?
4 water nat water 18.015 92 ? ? ? ?
#
loop_
_entity_name_com.entity_id
_entity_name_com.name
1 'VDR, 1,25-dihydroxyvitamin D3 receptor'
2
;PBP, PPAR binding protein, Thyroid hormone receptor-associated protein complex 220 kDa component, Trap220, Thyroid receptor interacting protein 2, TRIP2, p53 regulatory protein RB18A, Vitamin D receptor-interacting protein complex component DRIP205, Activator-recruited cofactor 205 kDa component, ARC205
;
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 'polypeptide(L)' no no
;LKDSLRPKLSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTGSVTLDLSPLSMLPHLADLVSYSIQKVIGFAK
MIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLH
EEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSF
QPENSMKLTPLVLEVFGNEISLVPRGSMAISDPNSSSVDKLAAALEHHHHHH
;
;LKDSLRPKLSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTGSVTLDLSPLSMLPHLADLVSYSIQKVIGFAK
MIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLH
EEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSF
QPENSMKLTPLVLEVFGNEISLVPRGSMAISDPNSSSVDKLAAALEHHHHHH
;
A ?
2 'polypeptide(L)' no no KNHPMLMNLLKDN KNHPMLMNLLKDN C ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 LEU n
1 2 LYS n
1 3 ASP n
1 4 SER n
1 5 LEU n
1 6 ARG n
1 7 PRO n
1 8 LYS n
1 9 LEU n
1 10 SER n
1 11 GLU n
1 12 GLU n
1 13 GLN n
1 14 GLN n
1 15 HIS n
1 16 ILE n
1 17 ILE n
1 18 ALA n
1 19 ILE n
1 20 LEU n
1 21 LEU n
1 22 ASP n
1 23 ALA n
1 24 HIS n
1 25 HIS n
1 26 LYS n
1 27 THR n
1 28 TYR n
1 29 ASP n
1 30 PRO n
1 31 THR n
1 32 TYR n
1 33 ALA n
1 34 ASP n
1 35 PHE n
1 36 ARG n
1 37 ASP n
1 38 PHE n
1 39 ARG n
1 40 PRO n
1 41 PRO n
1 42 VAL n
1 43 ARG n
1 44 MET n
1 45 ASP n
1 46 GLY n
1 47 SER n
1 48 THR n
1 49 GLY n
1 50 SER n
1 51 VAL n
1 52 THR n
1 53 LEU n
1 54 ASP n
1 55 LEU n
1 56 SER n
1 57 PRO n
1 58 LEU n
1 59 SER n
1 60 MET n
1 61 LEU n
1 62 PRO n
1 63 HIS n
1 64 LEU n
1 65 ALA n
1 66 ASP n
1 67 LEU n
1 68 VAL n
1 69 SER n
1 70 TYR n
1 71 SER n
1 72 ILE n
1 73 GLN n
1 74 LYS n
1 75 VAL n
1 76 ILE n
1 77 GLY n
1 78 PHE n
1 79 ALA n
1 80 LYS n
1 81 MET n
1 82 ILE n
1 83 PRO n
1 84 GLY n
1 85 PHE n
1 86 ARG n
1 87 ASP n
1 88 LEU n
1 89 THR n
1 90 SER n
1 91 ASP n
1 92 ASP n
1 93 GLN n
1 94 ILE n
1 95 VAL n
1 96 LEU n
1 97 LEU n
1 98 LYS n
1 99 SER n
1 100 SER n
1 101 ALA n
1 102 ILE n
1 103 GLU n
1 104 VAL n
1 105 ILE n
1 106 MET n
1 107 LEU n
1 108 ARG n
1 109 SER n
1 110 ASN n
1 111 GLN n
1 112 SER n
1 113 PHE n
1 114 THR n
1 115 MET n
1 116 ASP n
1 117 ASP n
1 118 MET n
1 119 SER n
1 120 TRP n
1 121 ASP n
1 122 CYS n
1 123 GLY n
1 124 SER n
1 125 GLN n
1 126 ASP n
1 127 TYR n
1 128 LYS n
1 129 TYR n
1 130 ASP n
1 131 VAL n
1 132 THR n
1 133 ASP n
1 134 VAL n
1 135 SER n
1 136 LYS n
1 137 ALA n
1 138 GLY n
1 139 HIS n
1 140 THR n
1 141 LEU n
1 142 GLU n
1 143 LEU n
1 144 ILE n
1 145 GLU n
1 146 PRO n
1 147 LEU n
1 148 ILE n
1 149 LYS n
1 150 PHE n
1 151 GLN n
1 152 VAL n
1 153 GLY n
1 154 LEU n
1 155 LYS n
1 156 LYS n
1 157 LEU n
1 158 ASN n
1 159 LEU n
1 160 HIS n
1 161 GLU n
1 162 GLU n
1 163 GLU n
1 164 HIS n
1 165 VAL n
1 166 LEU n
1 167 LEU n
1 168 MET n
1 169 ALA n
1 170 ILE n
1 171 CYS n
1 172 ILE n
1 173 VAL n
1 174 SER n
1 175 PRO n
1 176 ASP n
1 177 ARG n
1 178 PRO n
1 179 GLY n
1 180 VAL n
1 181 GLN n
1 182 ASP n
1 183 ALA n
1 184 LYS n
1 185 LEU n
1 186 VAL n
1 187 GLU n
1 188 ALA n
1 189 ILE n
1 190 GLN n
1 191 ASP n
1 192 ARG n
1 193 LEU n
1 194 SER n
1 195 ASN n
1 196 THR n
1 197 LEU n
1 198 GLN n
1 199 THR n
1 200 TYR n
1 201 ILE n
1 202 ARG n
1 203 CYS n
1 204 ARG n
1 205 HIS n
1 206 PRO n
1 207 PRO n
1 208 PRO n
1 209 GLY n
1 210 SER n
1 211 HIS n
1 212 GLN n
1 213 LEU n
1 214 TYR n
1 215 ALA n
1 216 LYS n
1 217 MET n
1 218 ILE n
1 219 GLN n
1 220 LYS n
1 221 LEU n
1 222 ALA n
1 223 ASP n
1 224 LEU n
1 225 ARG n
1 226 SER n
1 227 LEU n
1 228 ASN n
1 229 GLU n
1 230 GLU n
1 231 HIS n
1 232 SER n
1 233 LYS n
1 234 GLN n
1 235 TYR n
1 236 ARG n
1 237 SER n
1 238 LEU n
1 239 SER n
1 240 PHE n
1 241 GLN n
1 242 PRO n
1 243 GLU n
1 244 ASN n
1 245 SER n
1 246 MET n
1 247 LYS n
1 248 LEU n
1 249 THR n
1 250 PRO n
1 251 LEU n
1 252 VAL n
1 253 LEU n
1 254 GLU n
1 255 VAL n
1 256 PHE n
1 257 GLY n
1 258 ASN n
1 259 GLU n
1 260 ILE n
1 261 SER n
1 262 LEU n
1 263 VAL n
1 264 PRO n
1 265 ARG n
1 266 GLY n
1 267 SER n
1 268 MET n
1 269 ALA n
1 270 ILE n
1 271 SER n
1 272 ASP n
1 273 PRO n
1 274 ASN n
1 275 SER n
1 276 SER n
1 277 SER n
1 278 VAL n
1 279 ASP n
1 280 LYS n
1 281 LEU n
1 282 ALA n
1 283 ALA n
1 284 ALA n
1 285 LEU n
1 286 GLU n
1 287 HIS n
1 288 HIS n
1 289 HIS n
1 290 HIS n
1 291 HIS n
1 292 HIS n
2 1 LYS n
2 2 ASN n
2 3 HIS n
2 4 PRO n
2 5 MET n
2 6 LEU n
2 7 MET n
2 8 ASN n
2 9 LEU n
2 10 LEU n
2 11 LYS n
2 12 ASP n
2 13 ASN n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name 'Norway rat'
_entity_src_gen.gene_src_genus Rattus
_entity_src_gen.pdbx_gene_src_gene 'VDR, NR1I1'
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562
_entity_src_gen.host_org_genus Escherichia
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain 'BL-21(DE3) CodonPlus RIL'
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type plasmid
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name pET-29b
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_db_isoform
1 UNP VDR_RAT P13053 1
;LKDSLRPKLSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTGSYSPRPTLSFSGNSSSSSSDLYTTSLDMMEP
SGFSNLDLNGEDSDDPSVTLDLSPLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSF
TMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRL
SNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGNEIS
;
116 ?
2 UNP PPRB_HUMAN Q15648 2 KNHPMLMNLLKDN 640 ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1RK3 A 1 ? 261 ? P13053 116 ? 423 ? 116 423
2 2 1RK3 C 1 ? 13 ? Q15648 640 ? 652 ? 625 637
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 1RK3 ? A ? ? UNP P13053 SER 165 deletion ? 1
1 1RK3 ? A ? ? UNP P13053 TYR 166 deletion ? 2
1 1RK3 ? A ? ? UNP P13053 SER 167 deletion ? 3
1 1RK3 ? A ? ? UNP P13053 PRO 168 deletion ? 4
1 1RK3 ? A ? ? UNP P13053 ARG 169 deletion ? 5
1 1RK3 ? A ? ? UNP P13053 PRO 170 deletion ? 6
1 1RK3 ? A ? ? UNP P13053 THR 171 deletion ? 7
1 1RK3 ? A ? ? UNP P13053 LEU 172 deletion ? 8
1 1RK3 ? A ? ? UNP P13053 SER 173 deletion ? 9
1 1RK3 ? A ? ? UNP P13053 PHE 174 deletion ? 10
1 1RK3 ? A ? ? UNP P13053 SER 175 deletion ? 11
1 1RK3 ? A ? ? UNP P13053 GLY 176 deletion ? 12
1 1RK3 ? A ? ? UNP P13053 ASN 177 deletion ? 13
1 1RK3 ? A ? ? UNP P13053 SER 178 deletion ? 14
1 1RK3 ? A ? ? UNP P13053 SER 179 deletion ? 15
1 1RK3 ? A ? ? UNP P13053 SER 180 deletion ? 16
1 1RK3 ? A ? ? UNP P13053 SER 181 deletion ? 17
1 1RK3 ? A ? ? UNP P13053 SER 182 deletion ? 18
1 1RK3 ? A ? ? UNP P13053 SER 183 deletion ? 19
1 1RK3 ? A ? ? UNP P13053 ASP 184 deletion ? 20
1 1RK3 ? A ? ? UNP P13053 LEU 185 deletion ? 21
1 1RK3 ? A ? ? UNP P13053 TYR 186 deletion ? 22
1 1RK3 ? A ? ? UNP P13053 THR 187 deletion ? 23
1 1RK3 ? A ? ? UNP P13053 THR 188 deletion ? 24
1 1RK3 ? A ? ? UNP P13053 SER 189 deletion ? 25
1 1RK3 ? A ? ? UNP P13053 LEU 190 deletion ? 26
1 1RK3 ? A ? ? UNP P13053 ASP 191 deletion ? 27
1 1RK3 ? A ? ? UNP P13053 MET 192 deletion ? 28
1 1RK3 ? A ? ? UNP P13053 MET 193 deletion ? 29
1 1RK3 ? A ? ? UNP P13053 GLU 194 deletion ? 30
1 1RK3 ? A ? ? UNP P13053 PRO 195 deletion ? 31
1 1RK3 ? A ? ? UNP P13053 SER 196 deletion ? 32
1 1RK3 ? A ? ? UNP P13053 GLY 197 deletion ? 33
1 1RK3 ? A ? ? UNP P13053 PHE 198 deletion ? 34
1 1RK3 ? A ? ? UNP P13053 SER 199 deletion ? 35
1 1RK3 ? A ? ? UNP P13053 ASN 200 deletion ? 36
1 1RK3 ? A ? ? UNP P13053 LEU 201 deletion ? 37
1 1RK3 ? A ? ? UNP P13053 ASP 202 deletion ? 38
1 1RK3 ? A ? ? UNP P13053 LEU 203 deletion ? 39
1 1RK3 ? A ? ? UNP P13053 ASN 204 deletion ? 40
1 1RK3 ? A ? ? UNP P13053 GLY 205 deletion ? 41
1 1RK3 ? A ? ? UNP P13053 GLU 206 deletion ? 42
1 1RK3 ? A ? ? UNP P13053 ASP 207 deletion ? 43
1 1RK3 ? A ? ? UNP P13053 SER 208 deletion ? 44
1 1RK3 ? A ? ? UNP P13053 ASP 209 deletion ? 45
1 1RK3 ? A ? ? UNP P13053 ASP 210 deletion ? 46
1 1RK3 ? A ? ? UNP P13053 PRO 211 deletion ? 47
1 1RK3 LEU A 262 ? UNP P13053 ? ? 'cloning artifact' 424 48
1 1RK3 VAL A 263 ? UNP P13053 ? ? 'cloning artifact' 425 49
1 1RK3 PRO A 264 ? UNP P13053 ? ? 'cloning artifact' 426 50
1 1RK3 ARG A 265 ? UNP P13053 ? ? 'cloning artifact' 427 51
1 1RK3 GLY A 266 ? UNP P13053 ? ? 'cloning artifact' 428 52
1 1RK3 SER A 267 ? UNP P13053 ? ? 'cloning artifact' 429 53
1 1RK3 MET A 268 ? UNP P13053 ? ? 'cloning artifact' 430 54
1 1RK3 ALA A 269 ? UNP P13053 ? ? 'cloning artifact' 431 55
1 1RK3 ILE A 270 ? UNP P13053 ? ? 'cloning artifact' 432 56
1 1RK3 SER A 271 ? UNP P13053 ? ? 'cloning artifact' 433 57
1 1RK3 ASP A 272 ? UNP P13053 ? ? 'cloning artifact' 434 58
1 1RK3 PRO A 273 ? UNP P13053 ? ? 'cloning artifact' 435 59
1 1RK3 ASN A 274 ? UNP P13053 ? ? 'cloning artifact' 436 60
1 1RK3 SER A 275 ? UNP P13053 ? ? 'cloning artifact' 437 61
1 1RK3 SER A 276 ? UNP P13053 ? ? 'cloning artifact' 438 62
1 1RK3 SER A 277 ? UNP P13053 ? ? 'cloning artifact' 439 63
1 1RK3 VAL A 278 ? UNP P13053 ? ? 'cloning artifact' 440 64
1 1RK3 ASP A 279 ? UNP P13053 ? ? 'cloning artifact' 441 65
1 1RK3 LYS A 280 ? UNP P13053 ? ? 'cloning artifact' 442 66
1 1RK3 LEU A 281 ? UNP P13053 ? ? 'cloning artifact' 443 67
1 1RK3 ALA A 282 ? UNP P13053 ? ? 'cloning artifact' 444 68
1 1RK3 ALA A 283 ? UNP P13053 ? ? 'cloning artifact' 445 69
1 1RK3 ALA A 284 ? UNP P13053 ? ? 'cloning artifact' 446 70
1 1RK3 LEU A 285 ? UNP P13053 ? ? 'cloning artifact' 447 71
1 1RK3 GLU A 286 ? UNP P13053 ? ? 'cloning artifact' 448 72
1 1RK3 HIS A 287 ? UNP P13053 ? ? 'expression tag' 449 73
1 1RK3 HIS A 288 ? UNP P13053 ? ? 'expression tag' 450 74
1 1RK3 HIS A 289 ? UNP P13053 ? ? 'expression tag' 451 75
1 1RK3 HIS A 290 ? UNP P13053 ? ? 'expression tag' 452 76
1 1RK3 HIS A 291 ? UNP P13053 ? ? 'expression tag' 453 77
1 1RK3 HIS A 292 ? UNP P13053 ? ? 'expression tag' 454 78
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
VDX non-polymer .
'5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL'
'1,25 DIHYDROXY VITAMIN D3' 'C27 H44 O3' 416.636
#
_exptl.entry_id 1RK3
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 40.48
_exptl_crystal.description ?
_exptl_crystal.density_Matthews 2.07
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 295
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pdbx_details
'PEG 4000, MOPS, ammonium citrate, isopropanol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K'
_exptl_crystal_grow.pdbx_pH_range .
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'BRUKER PROTEUM R'
_diffrn_detector.pdbx_collection_date 2002-10-24
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'Montel optics'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'ENRAF-NONIUS FR591'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.5418
#
_reflns.entry_id 1RK3
_reflns.observed_criterion_sigma_F 0
_reflns.observed_criterion_sigma_I 3.0
_reflns.d_resolution_high 2.20
_reflns.d_resolution_low 42.44
_reflns.number_all 14565
_reflns.number_obs 14475
_reflns.percent_possible_obs 99
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value 0.052
_reflns.pdbx_netI_over_sigmaI 10.9
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 5.7
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 2.20
_reflns_shell.d_res_low 2.30
_reflns_shell.percent_possible_all 95
_reflns_shell.Rmerge_I_obs ?
_reflns_shell.pdbx_Rsym_value 0.198
_reflns_shell.meanI_over_sigI_obs 2.7
_reflns_shell.pdbx_redundancy ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 1RK3
_refine.ls_number_reflns_obs 14468
_refine.ls_number_reflns_all 14468
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 30.00
_refine.ls_d_res_high 2.20
_refine.ls_percent_reflns_obs 99.42
_refine.ls_R_factor_obs 0.19303
_refine.ls_R_factor_all 0.19303
_refine.ls_R_factor_R_work 0.19048
_refine.ls_R_factor_R_free 0.24255
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 5.0
_refine.ls_number_reflns_R_free 727
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.950
_refine.correlation_coeff_Fo_to_Fc_free 0.919
_refine.B_iso_mean 34.700
_refine.aniso_B[1][1] -3.19
_refine.aniso_B[2][2] 3.31
_refine.aniso_B[3][3] -0.26
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] -0.62
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details 'BABINET MODEL WITH MASK'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.40
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model 'PDB entry 1RJK'
_refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.270
_refine.pdbx_overall_ESU_R_Free 0.213
_refine.overall_SU_ML 0.142
_refine.overall_SU_B 5.508
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1988
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 30
_refine_hist.number_atoms_solvent 92
_refine_hist.number_atoms_total 2110
_refine_hist.d_res_high 2.20
_refine_hist.d_res_low 30.00
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.016 0.021 ? 2061 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 1.384 1.990 ? 2791 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 5.111 5.000 ? 247 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.089 0.200 ? 320 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.006 0.020 ? 1507 'X-RAY DIFFRACTION' ?
r_nbd_refined 0.208 0.200 ? 923 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 0.137 0.200 ? 94 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 0.171 0.200 ? 14 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 0.116 0.200 ? 1 'X-RAY DIFFRACTION' ?
r_mcbond_it 0.822 1.500 ? 1253 'X-RAY DIFFRACTION' ?
r_mcangle_it 1.565 2.000 ? 2032 'X-RAY DIFFRACTION' ?
r_scbond_it 2.438 3.000 ? 808 'X-RAY DIFFRACTION' ?
r_scangle_it 3.998 4.500 ? 759 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 2.201
_refine_ls_shell.d_res_low 2.258
_refine_ls_shell.number_reflns_R_work 936
_refine_ls_shell.R_factor_R_work 0.199
_refine_ls_shell.percent_reflns_obs ?
_refine_ls_shell.R_factor_R_free 0.271
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 41
_refine_ls_shell.number_reflns_obs 977
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.R_factor_all ?
#
_struct.entry_id 1RK3
_struct.title
;crystal structure of the rat vitamin D receptor ligand binding domain complexed with 1,25-dihydroxyvitamin D3 and a synthetic peptide containing the NR2 box of DRIP 205
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1RK3
_struct_keywords.pdbx_keywords 'hormone/growth factor receptor'
_struct_keywords.text
'nuclear receptor-ligand complex, nuclear receptor-coactivator interactions, hormone-growth factor receptor COMPLEX'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 4 ?
#
_struct_biol.id 1
_struct_biol.details
;The asymmetric unit contains one biological unit. The biological unit is composed of one molecule of VDR, one ligand molecule, and one molecule of the synthetic peptide
;
_struct_biol.pdbx_parent_biol_id ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 SER A 10 ? TYR A 28 ? SER A 125 TYR A 143 1 ? 19
HELX_P HELX_P2 2 TYR A 32 ? PHE A 38 ? TYR A 147 PHE A 153 5 ? 7
HELX_P HELX_P3 3 MET A 60 ? MET A 81 ? MET A 222 MET A 243 1 ? 22
HELX_P HELX_P4 4 GLY A 84 ? LEU A 88 ? GLY A 246 LEU A 250 5 ? 5
HELX_P HELX_P5 5 THR A 89 ? ASN A 110 ? THR A 251 ASN A 272 1 ? 22
HELX_P HELX_P6 6 SER A 124 ? ASP A 126 ? SER A 286 ASP A 288 5 ? 3
HELX_P HELX_P7 7 ASP A 130 ? LYS A 136 ? ASP A 292 LYS A 298 1 ? 7
HELX_P HELX_P8 8 THR A 140 ? LEU A 157 ? THR A 302 LEU A 319 1 ? 18
HELX_P HELX_P9 9 HIS A 160 ? VAL A 173 ? HIS A 322 VAL A 335 1 ? 14
HELX_P HELX_P10 10 ASP A 182 ? HIS A 205 ? ASP A 344 HIS A 367 1 ? 24
HELX_P HELX_P11 11 GLN A 212 ? GLN A 241 ? GLN A 374 GLN A 403 1 ? 30
HELX_P HELX_P12 12 GLN A 241 ? MET A 246 ? GLN A 403 MET A 408 1 ? 6
HELX_P HELX_P13 13 THR A 249 ? GLY A 257 ? THR A 411 GLY A 419 1 ? 9
HELX_P HELX_P14 14 HIS B 3 ? LYS B 11 ? HIS C 627 LYS C 635 1 ? 9
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
_struct_mon_prot_cis.pdbx_id 1
_struct_mon_prot_cis.label_comp_id PRO
_struct_mon_prot_cis.label_seq_id 207
_struct_mon_prot_cis.label_asym_id A
_struct_mon_prot_cis.label_alt_id .
_struct_mon_prot_cis.pdbx_PDB_ins_code ?
_struct_mon_prot_cis.auth_comp_id PRO
_struct_mon_prot_cis.auth_seq_id 369
_struct_mon_prot_cis.auth_asym_id A
_struct_mon_prot_cis.pdbx_label_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_label_seq_id_2 208
_struct_mon_prot_cis.pdbx_label_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_ins_code_2 ?
_struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_auth_seq_id_2 370
_struct_mon_prot_cis.pdbx_auth_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_model_num 1
_struct_mon_prot_cis.pdbx_omega_angle 3.17
#
_struct_sheet.id A
_struct_sheet.type ?
_struct_sheet.number_strands 3
_struct_sheet.details ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 PHE A 113 ? THR A 114 ? PHE A 275 THR A 276
A 2 SER A 119 ? ASP A 121 ? SER A 281 ASP A 283
A 3 LYS A 128 ? TYR A 129 ? LYS A 290 TYR A 291
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N THR A 114 ? N THR A 276 O SER A 119 ? O SER A 281
A 2 3 N TRP A 120 ? N TRP A 282 O TYR A 129 ? O TYR A 291
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id A
_struct_site.pdbx_auth_comp_id VDX
_struct_site.pdbx_auth_seq_id 500
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 12
_struct_site.details 'BINDING SITE FOR RESIDUE VDX A 500'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 12 TYR A 28 ? TYR A 143 . ? 1_555 ?
2 AC1 12 VAL A 68 ? VAL A 230 . ? 1_555 ?
3 AC1 12 SER A 71 ? SER A 233 . ? 1_555 ?
4 AC1 12 ILE A 105 ? ILE A 267 . ? 1_555 ?
5 AC1 12 ARG A 108 ? ARG A 270 . ? 1_555 ?
6 AC1 12 SER A 109 ? SER A 271 . ? 1_555 ?
7 AC1 12 SER A 112 ? SER A 274 . ? 1_555 ?
8 AC1 12 TRP A 120 ? TRP A 282 . ? 1_555 ?
9 AC1 12 CYS A 122 ? CYS A 284 . ? 1_555 ?
10 AC1 12 VAL A 134 ? VAL A 296 . ? 1_555 ?
11 AC1 12 HIS A 139 ? HIS A 301 . ? 1_555 ?
12 AC1 12 HIS A 231 ? HIS A 393 . ? 1_555 ?
#
_database_PDB_matrix.entry_id 1RK3
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 1RK3
_atom_sites.fract_transf_matrix[1][1] 0.006463
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000694
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.022648
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.023905
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 LEU 1 116 ? ? ? A . n
A 1 2 LYS 2 117 ? ? ? A . n
A 1 3 ASP 3 118 ? ? ? A . n
A 1 4 SER 4 119 ? ? ? A . n
A 1 5 LEU 5 120 ? ? ? A . n
A 1 6 ARG 6 121 ? ? ? A . n
A 1 7 PRO 7 122 ? ? ? A . n
A 1 8 LYS 8 123 123 LYS GLY A . n
A 1 9 LEU 9 124 124 LEU LEU A . n
A 1 10 SER 10 125 125 SER SER A . n
A 1 11 GLU 11 126 126 GLU GLU A . n
A 1 12 GLU 12 127 127 GLU GLU A . n
A 1 13 GLN 13 128 128 GLN GLN A . n
A 1 14 GLN 14 129 129 GLN GLN A . n
A 1 15 HIS 15 130 130 HIS HIS A . n
A 1 16 ILE 16 131 131 ILE ILE A . n
A 1 17 ILE 17 132 132 ILE ILE A . n
A 1 18 ALA 18 133 133 ALA ALA A . n
A 1 19 ILE 19 134 134 ILE ILE A . n
A 1 20 LEU 20 135 135 LEU LEU A . n
A 1 21 LEU 21 136 136 LEU LEU A . n
A 1 22 ASP 22 137 137 ASP ASP A . n
A 1 23 ALA 23 138 138 ALA ALA A . n
A 1 24 HIS 24 139 139 HIS HIS A . n
A 1 25 HIS 25 140 140 HIS HIS A . n
A 1 26 LYS 26 141 141 LYS LYS A . n
A 1 27 THR 27 142 142 THR THR A . n
A 1 28 TYR 28 143 143 TYR TYR A . n
A 1 29 ASP 29 144 144 ASP ASP A . n
A 1 30 PRO 30 145 145 PRO PRO A . n
A 1 31 THR 31 146 146 THR THR A . n
A 1 32 TYR 32 147 147 TYR TYR A . n
A 1 33 ALA 33 148 148 ALA ALA A . n
A 1 34 ASP 34 149 149 ASP ASP A . n
A 1 35 PHE 35 150 150 PHE PHE A . n
A 1 36 ARG 36 151 151 ARG ALA A . n
A 1 37 ASP 37 152 152 ASP ASP A . n
A 1 38 PHE 38 153 153 PHE PHE A . n
A 1 39 ARG 39 154 154 ARG ARG A . n
A 1 40 PRO 40 155 155 PRO PRO A . n
A 1 41 PRO 41 156 156 PRO PRO A . n
A 1 42 VAL 42 157 157 VAL VAL A . n
A 1 43 ARG 43 158 158 ARG ARG A . n
A 1 44 MET 44 159 159 MET MET A . n
A 1 45 ASP 45 160 ? ? ? A . n
A 1 46 GLY 46 161 ? ? ? A . n
A 1 47 SER 47 162 ? ? ? A . n
A 1 48 THR 48 163 ? ? ? A . n
A 1 49 GLY 49 164 ? ? ? A . n
A 1 50 SER 50 212 ? ? ? A . n
A 1 51 VAL 51 213 ? ? ? A . n
A 1 52 THR 52 214 ? ? ? A . n
A 1 53 LEU 53 215 ? ? ? A . n
A 1 54 ASP 54 216 ? ? ? A . n
A 1 55 LEU 55 217 ? ? ? A . n
A 1 56 SER 56 218 ? ? ? A . n
A 1 57 PRO 57 219 219 PRO PRO A . n
A 1 58 LEU 58 220 220 LEU LEU A . n
A 1 59 SER 59 221 221 SER SER A . n
A 1 60 MET 60 222 222 MET MET A . n
A 1 61 LEU 61 223 223 LEU LEU A . n
A 1 62 PRO 62 224 224 PRO PRO A . n
A 1 63 HIS 63 225 225 HIS HIS A . n
A 1 64 LEU 64 226 226 LEU LEU A . n
A 1 65 ALA 65 227 227 ALA ALA A . n
A 1 66 ASP 66 228 228 ASP ASP A . n
A 1 67 LEU 67 229 229 LEU LEU A . n
A 1 68 VAL 68 230 230 VAL VAL A . n
A 1 69 SER 69 231 231 SER SER A . n
A 1 70 TYR 70 232 232 TYR TYR A . n
A 1 71 SER 71 233 233 SER SER A . n
A 1 72 ILE 72 234 234 ILE ILE A . n
A 1 73 GLN 73 235 235 GLN GLN A . n
A 1 74 LYS 74 236 236 LYS LYS A . n
A 1 75 VAL 75 237 237 VAL VAL A . n
A 1 76 ILE 76 238 238 ILE ILE A . n
A 1 77 GLY 77 239 239 GLY GLY A . n
A 1 78 PHE 78 240 240 PHE PHE A . n
A 1 79 ALA 79 241 241 ALA ALA A . n
A 1 80 LYS 80 242 242 LYS LYS A . n
A 1 81 MET 81 243 243 MET MET A . n
A 1 82 ILE 82 244 244 ILE ILE A . n
A 1 83 PRO 83 245 245 PRO PRO A . n
A 1 84 GLY 84 246 246 GLY GLY A . n
A 1 85 PHE 85 247 247 PHE PHE A . n
A 1 86 ARG 86 248 248 ARG ALA A . n
A 1 87 ASP 87 249 249 ASP ASP A . n
A 1 88 LEU 88 250 250 LEU LEU A . n
A 1 89 THR 89 251 251 THR THR A . n
A 1 90 SER 90 252 252 SER SER A . n
A 1 91 ASP 91 253 253 ASP ASP A . n
A 1 92 ASP 92 254 254 ASP ASP A . n
A 1 93 GLN 93 255 255 GLN GLN A . n
A 1 94 ILE 94 256 256 ILE ILE A . n
A 1 95 VAL 95 257 257 VAL VAL A . n
A 1 96 LEU 96 258 258 LEU LEU A . n
A 1 97 LEU 97 259 259 LEU LEU A . n
A 1 98 LYS 98 260 260 LYS LYS A . n
A 1 99 SER 99 261 261 SER SER A . n
A 1 100 SER 100 262 262 SER SER A . n
A 1 101 ALA 101 263 263 ALA ALA A . n
A 1 102 ILE 102 264 264 ILE ILE A . n
A 1 103 GLU 103 265 265 GLU GLU A . n
A 1 104 VAL 104 266 266 VAL VAL A . n
A 1 105 ILE 105 267 267 ILE ILE A . n
A 1 106 MET 106 268 268 MET MET A . n
A 1 107 LEU 107 269 269 LEU LEU A . n
A 1 108 ARG 108 270 270 ARG ARG A . n
A 1 109 SER 109 271 271 SER SER A . n
A 1 110 ASN 110 272 272 ASN ASN A . n
A 1 111 GLN 111 273 273 GLN GLN A . n
A 1 112 SER 112 274 274 SER SER A . n
A 1 113 PHE 113 275 275 PHE PHE A . n
A 1 114 THR 114 276 276 THR THR A . n
A 1 115 MET 115 277 277 MET MET A . n
A 1 116 ASP 116 278 278 ASP ASP A . n
A 1 117 ASP 117 279 279 ASP ASP A . n
A 1 118 MET 118 280 280 MET MET A . n
A 1 119 SER 119 281 281 SER SER A . n
A 1 120 TRP 120 282 282 TRP TRP A . n
A 1 121 ASP 121 283 283 ASP ASP A . n
A 1 122 CYS 122 284 284 CYS CYS A . n
A 1 123 GLY 123 285 285 GLY GLY A . n
A 1 124 SER 124 286 286 SER SER A . n
A 1 125 GLN 125 287 287 GLN GLN A . n
A 1 126 ASP 126 288 288 ASP ASP A . n
A 1 127 TYR 127 289 289 TYR TYR A . n
A 1 128 LYS 128 290 290 LYS LYS A . n
A 1 129 TYR 129 291 291 TYR TYR A . n
A 1 130 ASP 130 292 292 ASP ASP A . n
A 1 131 VAL 131 293 293 VAL VAL A . n
A 1 132 THR 132 294 294 THR THR A . n
A 1 133 ASP 133 295 295 ASP ASP A . n
A 1 134 VAL 134 296 296 VAL VAL A . n
A 1 135 SER 135 297 297 SER SER A . n
A 1 136 LYS 136 298 298 LYS LYS A . n
A 1 137 ALA 137 299 299 ALA ALA A . n
A 1 138 GLY 138 300 300 GLY GLY A . n
A 1 139 HIS 139 301 301 HIS HIS A . n
A 1 140 THR 140 302 302 THR THR A . n
A 1 141 LEU 141 303 303 LEU LEU A . n
A 1 142 GLU 142 304 304 GLU GLU A . n
A 1 143 LEU 143 305 305 LEU LEU A . n
A 1 144 ILE 144 306 306 ILE ILE A . n
A 1 145 GLU 145 307 307 GLU GLU A . n
A 1 146 PRO 146 308 308 PRO PRO A . n
A 1 147 LEU 147 309 309 LEU LEU A . n
A 1 148 ILE 148 310 310 ILE ILE A . n
A 1 149 LYS 149 311 311 LYS LYS A . n
A 1 150 PHE 150 312 312 PHE PHE A . n
A 1 151 GLN 151 313 313 GLN GLN A . n
A 1 152 VAL 152 314 314 VAL VAL A . n
A 1 153 GLY 153 315 315 GLY GLY A . n
A 1 154 LEU 154 316 316 LEU LEU A . n
A 1 155 LYS 155 317 317 LYS LYS A . n
A 1 156 LYS 156 318 318 LYS LYS A . n
A 1 157 LEU 157 319 319 LEU LEU A . n
A 1 158 ASN 158 320 320 ASN ASN A . n
A 1 159 LEU 159 321 321 LEU LEU A . n
A 1 160 HIS 160 322 322 HIS HIS A . n
A 1 161 GLU 161 323 323 GLU GLU A . n
A 1 162 GLU 162 324 324 GLU GLU A . n
A 1 163 GLU 163 325 325 GLU GLU A . n
A 1 164 HIS 164 326 326 HIS HIS A . n
A 1 165 VAL 165 327 327 VAL VAL A . n
A 1 166 LEU 166 328 328 LEU LEU A . n
A 1 167 LEU 167 329 329 LEU LEU A . n
A 1 168 MET 168 330 330 MET MET A . n
A 1 169 ALA 169 331 331 ALA ALA A . n
A 1 170 ILE 170 332 332 ILE ILE A . n
A 1 171 CYS 171 333 333 CYS CYS A . n
A 1 172 ILE 172 334 334 ILE ILE A . n
A 1 173 VAL 173 335 335 VAL VAL A . n
A 1 174 SER 174 336 336 SER SER A . n
A 1 175 PRO 175 337 337 PRO PRO A . n
A 1 176 ASP 176 338 338 ASP ASP A . n
A 1 177 ARG 177 339 339 ARG ARG A . n
A 1 178 PRO 178 340 340 PRO PRO A . n
A 1 179 GLY 179 341 341 GLY GLY A . n
A 1 180 VAL 180 342 342 VAL VAL A . n
A 1 181 GLN 181 343 343 GLN GLN A . n
A 1 182 ASP 182 344 344 ASP ASP A . n
A 1 183 ALA 183 345 345 ALA ALA A . n
A 1 184 LYS 184 346 346 LYS LYS A . n
A 1 185 LEU 185 347 347 LEU LEU A . n
A 1 186 VAL 186 348 348 VAL VAL A . n
A 1 187 GLU 187 349 349 GLU GLU A . n
A 1 188 ALA 188 350 350 ALA ALA A . n
A 1 189 ILE 189 351 351 ILE ILE A . n
A 1 190 GLN 190 352 352 GLN GLN A . n
A 1 191 ASP 191 353 353 ASP ASP A . n
A 1 192 ARG 192 354 354 ARG ARG A . n
A 1 193 LEU 193 355 355 LEU LEU A . n
A 1 194 SER 194 356 356 SER SER A . n
A 1 195 ASN 195 357 357 ASN ASN A . n
A 1 196 THR 196 358 358 THR THR A . n
A 1 197 LEU 197 359 359 LEU LEU A . n
A 1 198 GLN 198 360 360 GLN GLN A . n
A 1 199 THR 199 361 361 THR THR A . n
A 1 200 TYR 200 362 362 TYR TYR A . n
A 1 201 ILE 201 363 363 ILE ILE A . n
A 1 202 ARG 202 364 364 ARG ARG A . n
A 1 203 CYS 203 365 365 CYS CYS A . n
A 1 204 ARG 204 366 366 ARG ARG A . n
A 1 205 HIS 205 367 367 HIS HIS A . n
A 1 206 PRO 206 368 368 PRO PRO A . n
A 1 207 PRO 207 369 369 PRO PRO A . n
A 1 208 PRO 208 370 370 PRO PRO A . n
A 1 209 GLY 209 371 371 GLY GLY A . n
A 1 210 SER 210 372 372 SER SER A . n
A 1 211 HIS 211 373 373 HIS HIS A . n
A 1 212 GLN 212 374 374 GLN GLN A . n
A 1 213 LEU 213 375 375 LEU LEU A . n
A 1 214 TYR 214 376 376 TYR TYR A . n
A 1 215 ALA 215 377 377 ALA ALA A . n
A 1 216 LYS 216 378 378 LYS LYS A . n
A 1 217 MET 217 379 379 MET MET A . n
A 1 218 ILE 218 380 380 ILE ILE A . n
A 1 219 GLN 219 381 381 GLN GLN A . n
A 1 220 LYS 220 382 382 LYS LYS A . n
A 1 221 LEU 221 383 383 LEU LEU A . n
A 1 222 ALA 222 384 384 ALA ALA A . n
A 1 223 ASP 223 385 385 ASP ASP A . n
A 1 224 LEU 224 386 386 LEU LEU A . n
A 1 225 ARG 225 387 387 ARG ARG A . n
A 1 226 SER 226 388 388 SER SER A . n
A 1 227 LEU 227 389 389 LEU LEU A . n
A 1 228 ASN 228 390 390 ASN ASN A . n
A 1 229 GLU 229 391 391 GLU GLU A . n
A 1 230 GLU 230 392 392 GLU GLU A . n
A 1 231 HIS 231 393 393 HIS HIS A . n
A 1 232 SER 232 394 394 SER SER A . n
A 1 233 LYS 233 395 395 LYS LYS A . n
A 1 234 GLN 234 396 396 GLN GLN A . n
A 1 235 TYR 235 397 397 TYR TYR A . n
A 1 236 ARG 236 398 398 ARG ARG A . n
A 1 237 SER 237 399 399 SER SER A . n
A 1 238 LEU 238 400 400 LEU LEU A . n
A 1 239 SER 239 401 401 SER SER A . n
A 1 240 PHE 240 402 402 PHE PHE A . n
A 1 241 GLN 241 403 403 GLN ALA A . n
A 1 242 PRO 242 404 404 PRO PRO A . n
A 1 243 GLU 243 405 405 GLU GLU A . n
A 1 244 ASN 244 406 406 ASN ASN A . n
A 1 245 SER 245 407 407 SER SER A . n
A 1 246 MET 246 408 408 MET MET A . n
A 1 247 LYS 247 409 409 LYS LYS A . n
A 1 248 LEU 248 410 410 LEU LEU A . n
A 1 249 THR 249 411 411 THR THR A . n
A 1 250 PRO 250 412 412 PRO PRO A . n
A 1 251 LEU 251 413 413 LEU LEU A . n
A 1 252 VAL 252 414 414 VAL VAL A . n
A 1 253 LEU 253 415 415 LEU LEU A . n
A 1 254 GLU 254 416 416 GLU GLU A . n
A 1 255 VAL 255 417 417 VAL VAL A . n
A 1 256 PHE 256 418 418 PHE PHE A . n
A 1 257 GLY 257 419 419 GLY GLY A . n
A 1 258 ASN 258 420 420 ASN ASN A . n
A 1 259 GLU 259 421 ? ? ? A . n
A 1 260 ILE 260 422 ? ? ? A . n
A 1 261 SER 261 423 ? ? ? A . n
A 1 262 LEU 262 424 ? ? ? A . n
A 1 263 VAL 263 425 ? ? ? A . n
A 1 264 PRO 264 426 ? ? ? A . n
A 1 265 ARG 265 427 ? ? ? A . n
A 1 266 GLY 266 428 ? ? ? A . n
A 1 267 SER 267 429 ? ? ? A . n
A 1 268 MET 268 430 ? ? ? A . n
A 1 269 ALA 269 431 ? ? ? A . n
A 1 270 ILE 270 432 ? ? ? A . n
A 1 271 SER 271 433 ? ? ? A . n
A 1 272 ASP 272 434 ? ? ? A . n
A 1 273 PRO 273 435 ? ? ? A . n
A 1 274 ASN 274 436 ? ? ? A . n
A 1 275 SER 275 437 ? ? ? A . n
A 1 276 SER 276 438 ? ? ? A . n
A 1 277 SER 277 439 ? ? ? A . n
A 1 278 VAL 278 440 ? ? ? A . n
A 1 279 ASP 279 441 ? ? ? A . n
A 1 280 LYS 280 442 ? ? ? A . n
A 1 281 LEU 281 443 ? ? ? A . n
A 1 282 ALA 282 444 ? ? ? A . n
A 1 283 ALA 283 445 ? ? ? A . n
A 1 284 ALA 284 446 ? ? ? A . n
A 1 285 LEU 285 447 ? ? ? A . n
A 1 286 GLU 286 448 ? ? ? A . n
A 1 287 HIS 287 449 ? ? ? A . n
A 1 288 HIS 288 450 ? ? ? A . n
A 1 289 HIS 289 451 ? ? ? A . n
A 1 290 HIS 290 452 ? ? ? A . n
A 1 291 HIS 291 453 ? ? ? A . n
A 1 292 HIS 292 454 ? ? ? A . n
B 2 1 LYS 1 625 625 LYS LYS C . n
B 2 2 ASN 2 626 626 ASN ASN C . n
B 2 3 HIS 3 627 627 HIS HIS C . n
B 2 4 PRO 4 628 628 PRO PRO C . n
B 2 5 MET 5 629 629 MET MET C . n
B 2 6 LEU 6 630 630 LEU LEU C . n
B 2 7 MET 7 631 631 MET MET C . n
B 2 8 ASN 8 632 632 ASN ASN C . n
B 2 9 LEU 9 633 633 LEU LEU C . n
B 2 10 LEU 10 634 634 LEU LEU C . n
B 2 11 LYS 11 635 635 LYS LYS C . n
B 2 12 ASP 12 636 ? ? ? C . n
B 2 13 ASN 13 637 ? ? ? C . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 VDX 1 500 500 VDX VDX A .
D 4 HOH 1 1 1 HOH HOH A .
D 4 HOH 2 2 2 HOH HOH A .
D 4 HOH 3 3 3 HOH HOH A .
D 4 HOH 4 4 4 HOH HOH A .
D 4 HOH 5 5 5 HOH HOH A .
D 4 HOH 6 6 6 HOH HOH A .
D 4 HOH 7 7 7 HOH HOH A .
D 4 HOH 8 8 8 HOH HOH A .
D 4 HOH 9 9 9 HOH HOH A .
D 4 HOH 10 10 10 HOH HOH A .
D 4 HOH 11 11 11 HOH HOH A .
D 4 HOH 12 12 12 HOH HOH A .
D 4 HOH 13 13 13 HOH HOH A .
D 4 HOH 14 14 14 HOH HOH A .
D 4 HOH 15 15 15 HOH HOH A .
D 4 HOH 16 16 16 HOH HOH A .
D 4 HOH 17 17 17 HOH HOH A .
D 4 HOH 18 18 18 HOH HOH A .
D 4 HOH 19 19 19 HOH HOH A .
D 4 HOH 20 20 20 HOH HOH A .
D 4 HOH 21 21 21 HOH HOH A .
D 4 HOH 22 22 22 HOH HOH A .
D 4 HOH 23 23 23 HOH HOH A .
D 4 HOH 24 24 24 HOH HOH A .
D 4 HOH 25 25 25 HOH HOH A .
D 4 HOH 26 26 26 HOH HOH A .
D 4 HOH 27 27 27 HOH HOH A .
D 4 HOH 28 28 28 HOH HOH A .
D 4 HOH 29 29 29 HOH HOH A .
D 4 HOH 30 30 30 HOH HOH A .
D 4 HOH 31 31 31 HOH HOH A .
D 4 HOH 32 32 32 HOH HOH A .
D 4 HOH 33 33 33 HOH HOH A .
D 4 HOH 34 34 34 HOH HOH A .
D 4 HOH 35 35 35 HOH HOH A .
D 4 HOH 36 37 37 HOH HOH A .
D 4 HOH 37 38 38 HOH HOH A .
D 4 HOH 38 39 39 HOH HOH A .
D 4 HOH 39 40 40 HOH HOH A .
D 4 HOH 40 41 41 HOH HOH A .
D 4 HOH 41 42 42 HOH HOH A .
D 4 HOH 42 43 43 HOH HOH A .
D 4 HOH 43 44 44 HOH HOH A .
D 4 HOH 44 45 45 HOH HOH A .
D 4 HOH 45 46 46 HOH HOH A .
D 4 HOH 46 47 47 HOH HOH A .
D 4 HOH 47 48 48 HOH HOH A .
D 4 HOH 48 49 49 HOH HOH A .
D 4 HOH 49 50 50 HOH HOH A .
D 4 HOH 50 51 51 HOH HOH A .
D 4 HOH 51 52 52 HOH HOH A .
D 4 HOH 52 53 53 HOH HOH A .
D 4 HOH 53 54 54 HOH HOH A .
D 4 HOH 54 57 57 HOH HOH A .
D 4 HOH 55 58 58 HOH HOH A .
D 4 HOH 56 59 59 HOH HOH A .
D 4 HOH 57 60 60 HOH HOH A .
D 4 HOH 58 61 61 HOH HOH A .
D 4 HOH 59 62 62 HOH HOH A .
D 4 HOH 60 63 63 HOH HOH A .
D 4 HOH 61 64 64 HOH HOH A .
D 4 HOH 62 65 65 HOH HOH A .
D 4 HOH 63 66 66 HOH HOH A .
D 4 HOH 64 67 67 HOH HOH A .
D 4 HOH 65 68 68 HOH HOH A .
D 4 HOH 66 69 69 HOH HOH A .
D 4 HOH 67 70 70 HOH HOH A .
D 4 HOH 68 71 71 HOH HOH A .
D 4 HOH 69 72 72 HOH HOH A .
D 4 HOH 70 73 73 HOH HOH A .
D 4 HOH 71 74 74 HOH HOH A .
D 4 HOH 72 75 75 HOH HOH A .
D 4 HOH 73 76 76 HOH HOH A .
D 4 HOH 74 77 77 HOH HOH A .
D 4 HOH 75 78 78 HOH HOH A .
D 4 HOH 76 79 79 HOH HOH A .
D 4 HOH 77 80 80 HOH HOH A .
D 4 HOH 78 81 81 HOH HOH A .
D 4 HOH 79 82 82 HOH HOH A .
D 4 HOH 80 83 83 HOH HOH A .
D 4 HOH 81 84 84 HOH HOH A .
D 4 HOH 82 85 85 HOH HOH A .
D 4 HOH 83 86 86 HOH HOH A .
D 4 HOH 84 87 87 HOH HOH A .
D 4 HOH 85 88 88 HOH HOH A .
D 4 HOH 86 89 89 HOH HOH A .
D 4 HOH 87 90 90 HOH HOH A .
D 4 HOH 88 91 91 HOH HOH A .
D 4 HOH 89 92 92 HOH HOH A .
E 4 HOH 1 36 36 HOH HOH C .
E 4 HOH 2 55 55 HOH HOH C .
E 4 HOH 3 56 56 HOH HOH C .
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 author_and_software_defined_assembly PISA dimeric 2
2 software_defined_assembly PISA tetrameric 4
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B,C,D,E
2 1,2 A,B,C,D,E
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 2120 ?
1 MORE -8 ?
1 'SSA (A^2)' 11750 ?
2 'ABSA (A^2)' 5810 ?
2 MORE -35 ?
2 'SSA (A^2)' 21920 ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 2_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 154.7260000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2004-04-13
2 'Structure model' 1 1 2008-04-29
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2017-10-11
5 'Structure model' 1 4 2023-08-23
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Refinement description'
4 5 'Structure model' 'Data collection'
5 5 'Structure model' 'Database references'
6 5 'Structure model' 'Derived calculations'
7 5 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' software
2 5 'Structure model' chem_comp_atom
3 5 'Structure model' chem_comp_bond
4 5 'Structure model' database_2
5 5 'Structure model' pdbx_initial_refinement_model
6 5 'Structure model' struct_ref_seq_dif
7 5 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_software.name'
2 5 'Structure model' '_database_2.pdbx_DOI'
3 5 'Structure model' '_database_2.pdbx_database_accession'
4 5 'Structure model' '_struct_ref_seq_dif.details'
5 5 'Structure model' '_struct_site.pdbx_auth_asym_id'
6 5 'Structure model' '_struct_site.pdbx_auth_comp_id'
7 5 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
REFMAC refinement 5.1.24 ? 1
SAINT 'data reduction' . ? 2
LSCALE 'data scaling' . ? 3
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 CB A ASP 228 ? ? CG A ASP 228 ? ? OD2 A ASP 228 ? ? 124.11 118.30 5.81 0.90 N
2 1 CB A ASP 292 ? ? CG A ASP 292 ? ? OD2 A ASP 292 ? ? 124.31 118.30 6.01 0.90 N
3 1 CB A ASP 338 ? ? CG A ASP 338 ? ? OD2 A ASP 338 ? ? 123.83 118.30 5.53 0.90 N
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 CYS A 284 ? ? -102.84 41.66
2 1 TYR A 289 ? ? -110.38 50.29
3 1 GLN A 343 ? ? -90.15 -61.05
4 1 ASN C 626 ? ? 77.36 99.47
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A LYS 123 ? CB ? A LYS 8 CB
2 1 Y 1 A LYS 123 ? CG ? A LYS 8 CG
3 1 Y 1 A LYS 123 ? CD ? A LYS 8 CD
4 1 Y 1 A LYS 123 ? CE ? A LYS 8 CE
5 1 Y 1 A LYS 123 ? NZ ? A LYS 8 NZ
6 1 Y 1 A ARG 151 ? CG ? A ARG 36 CG
7 1 Y 1 A ARG 151 ? CD ? A ARG 36 CD
8 1 Y 1 A ARG 151 ? NE ? A ARG 36 NE
9 1 Y 1 A ARG 151 ? CZ ? A ARG 36 CZ
10 1 Y 1 A ARG 151 ? NH1 ? A ARG 36 NH1
11 1 Y 1 A ARG 151 ? NH2 ? A ARG 36 NH2
12 1 Y 1 A ARG 248 ? CG ? A ARG 86 CG
13 1 Y 1 A ARG 248 ? CD ? A ARG 86 CD
14 1 Y 1 A ARG 248 ? NE ? A ARG 86 NE
15 1 Y 1 A ARG 248 ? CZ ? A ARG 86 CZ
16 1 Y 1 A ARG 248 ? NH1 ? A ARG 86 NH1
17 1 Y 1 A ARG 248 ? NH2 ? A ARG 86 NH2
18 1 Y 1 A GLN 403 ? CG ? A GLN 241 CG
19 1 Y 1 A GLN 403 ? CD ? A GLN 241 CD
20 1 Y 1 A GLN 403 ? OE1 ? A GLN 241 OE1
21 1 Y 1 A GLN 403 ? NE2 ? A GLN 241 NE2
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A LEU 116 ? A LEU 1
2 1 Y 1 A LYS 117 ? A LYS 2
3 1 Y 1 A ASP 118 ? A ASP 3
4 1 Y 1 A SER 119 ? A SER 4
5 1 Y 1 A LEU 120 ? A LEU 5
6 1 Y 1 A ARG 121 ? A ARG 6
7 1 Y 1 A PRO 122 ? A PRO 7
8 1 Y 1 A ASP 160 ? A ASP 45
9 1 Y 1 A GLY 161 ? A GLY 46
10 1 Y 1 A SER 162 ? A SER 47
11 1 Y 1 A THR 163 ? A THR 48
12 1 Y 1 A GLY 164 ? A GLY 49
13 1 Y 1 A SER 212 ? A SER 50
14 1 Y 1 A VAL 213 ? A VAL 51
15 1 Y 1 A THR 214 ? A THR 52
16 1 Y 1 A LEU 215 ? A LEU 53
17 1 Y 1 A ASP 216 ? A ASP 54
18 1 Y 1 A LEU 217 ? A LEU 55
19 1 Y 1 A SER 218 ? A SER 56
20 1 Y 1 A GLU 421 ? A GLU 259
21 1 Y 1 A ILE 422 ? A ILE 260
22 1 Y 1 A SER 423 ? A SER 261
23 1 Y 1 A LEU 424 ? A LEU 262
24 1 Y 1 A VAL 425 ? A VAL 263
25 1 Y 1 A PRO 426 ? A PRO 264
26 1 Y 1 A ARG 427 ? A ARG 265
27 1 Y 1 A GLY 428 ? A GLY 266
28 1 Y 1 A SER 429 ? A SER 267
29 1 Y 1 A MET 430 ? A MET 268
30 1 Y 1 A ALA 431 ? A ALA 269
31 1 Y 1 A ILE 432 ? A ILE 270
32 1 Y 1 A SER 433 ? A SER 271
33 1 Y 1 A ASP 434 ? A ASP 272
34 1 Y 1 A PRO 435 ? A PRO 273
35 1 Y 1 A ASN 436 ? A ASN 274
36 1 Y 1 A SER 437 ? A SER 275
37 1 Y 1 A SER 438 ? A SER 276
38 1 Y 1 A SER 439 ? A SER 277
39 1 Y 1 A VAL 440 ? A VAL 278
40 1 Y 1 A ASP 441 ? A ASP 279
41 1 Y 1 A LYS 442 ? A LYS 280
42 1 Y 1 A LEU 443 ? A LEU 281
43 1 Y 1 A ALA 444 ? A ALA 282
44 1 Y 1 A ALA 445 ? A ALA 283
45 1 Y 1 A ALA 446 ? A ALA 284
46 1 Y 1 A LEU 447 ? A LEU 285
47 1 Y 1 A GLU 448 ? A GLU 286
48 1 Y 1 A HIS 449 ? A HIS 287
49 1 Y 1 A HIS 450 ? A HIS 288
50 1 Y 1 A HIS 451 ? A HIS 289
51 1 Y 1 A HIS 452 ? A HIS 290
52 1 Y 1 A HIS 453 ? A HIS 291
53 1 Y 1 A HIS 454 ? A HIS 292
54 1 Y 1 C ASP 636 ? B ASP 12
55 1 Y 1 C ASN 637 ? B ASN 13
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CYS N N N N 74
CYS CA C N R 75
CYS C C N N 76
CYS O O N N 77
CYS CB C N N 78
CYS SG S N N 79
CYS OXT O N N 80
CYS H H N N 81
CYS H2 H N N 82
CYS HA H N N 83
CYS HB2 H N N 84
CYS HB3 H N N 85
CYS HG H N N 86
CYS HXT H N N 87
GLN N N N N 88
GLN CA C N S 89
GLN C C N N 90
GLN O O N N 91
GLN CB C N N 92
GLN CG C N N 93
GLN CD C N N 94
GLN OE1 O N N 95
GLN NE2 N N N 96
GLN OXT O N N 97
GLN H H N N 98
GLN H2 H N N 99
GLN HA H N N 100
GLN HB2 H N N 101
GLN HB3 H N N 102
GLN HG2 H N N 103
GLN HG3 H N N 104
GLN HE21 H N N 105
GLN HE22 H N N 106
GLN HXT H N N 107
GLU N N N N 108
GLU CA C N S 109
GLU C C N N 110
GLU O O N N 111
GLU CB C N N 112
GLU CG C N N 113
GLU CD C N N 114
GLU OE1 O N N 115
GLU OE2 O N N 116
GLU OXT O N N 117
GLU H H N N 118
GLU H2 H N N 119
GLU HA H N N 120
GLU HB2 H N N 121
GLU HB3 H N N 122
GLU HG2 H N N 123
GLU HG3 H N N 124
GLU HE2 H N N 125
GLU HXT H N N 126
GLY N N N N 127
GLY CA C N N 128
GLY C C N N 129
GLY O O N N 130
GLY OXT O N N 131
GLY H H N N 132
GLY H2 H N N 133
GLY HA2 H N N 134
GLY HA3 H N N 135
GLY HXT H N N 136
HIS N N N N 137
HIS CA C N S 138
HIS C C N N 139
HIS O O N N 140
HIS CB C N N 141
HIS CG C Y N 142
HIS ND1 N Y N 143
HIS CD2 C Y N 144
HIS CE1 C Y N 145
HIS NE2 N Y N 146
HIS OXT O N N 147
HIS H H N N 148
HIS H2 H N N 149
HIS HA H N N 150
HIS HB2 H N N 151
HIS HB3 H N N 152
HIS HD1 H N N 153
HIS HD2 H N N 154
HIS HE1 H N N 155
HIS HE2 H N N 156
HIS HXT H N N 157
HOH O O N N 158
HOH H1 H N N 159
HOH H2 H N N 160
ILE N N N N 161
ILE CA C N S 162
ILE C C N N 163
ILE O O N N 164
ILE CB C N S 165
ILE CG1 C N N 166
ILE CG2 C N N 167
ILE CD1 C N N 168
ILE OXT O N N 169
ILE H H N N 170
ILE H2 H N N 171
ILE HA H N N 172
ILE HB H N N 173
ILE HG12 H N N 174
ILE HG13 H N N 175
ILE HG21 H N N 176
ILE HG22 H N N 177
ILE HG23 H N N 178
ILE HD11 H N N 179
ILE HD12 H N N 180
ILE HD13 H N N 181
ILE HXT H N N 182
LEU N N N N 183
LEU CA C N S 184
LEU C C N N 185
LEU O O N N 186
LEU CB C N N 187
LEU CG C N N 188
LEU CD1 C N N 189
LEU CD2 C N N 190
LEU OXT O N N 191
LEU H H N N 192
LEU H2 H N N 193
LEU HA H N N 194
LEU HB2 H N N 195
LEU HB3 H N N 196
LEU HG H N N 197
LEU HD11 H N N 198
LEU HD12 H N N 199
LEU HD13 H N N 200
LEU HD21 H N N 201
LEU HD22 H N N 202
LEU HD23 H N N 203
LEU HXT H N N 204
LYS N N N N 205
LYS CA C N S 206
LYS C C N N 207
LYS O O N N 208
LYS CB C N N 209
LYS CG C N N 210
LYS CD C N N 211
LYS CE C N N 212
LYS NZ N N N 213
LYS OXT O N N 214
LYS H H N N 215
LYS H2 H N N 216
LYS HA H N N 217
LYS HB2 H N N 218
LYS HB3 H N N 219
LYS HG2 H N N 220
LYS HG3 H N N 221
LYS HD2 H N N 222
LYS HD3 H N N 223
LYS HE2 H N N 224
LYS HE3 H N N 225
LYS HZ1 H N N 226
LYS HZ2 H N N 227
LYS HZ3 H N N 228
LYS HXT H N N 229
MET N N N N 230
MET CA C N S 231
MET C C N N 232
MET O O N N 233
MET CB C N N 234
MET CG C N N 235
MET SD S N N 236
MET CE C N N 237
MET OXT O N N 238
MET H H N N 239
MET H2 H N N 240
MET HA H N N 241
MET HB2 H N N 242
MET HB3 H N N 243
MET HG2 H N N 244
MET HG3 H N N 245
MET HE1 H N N 246
MET HE2 H N N 247
MET HE3 H N N 248
MET HXT H N N 249
PHE N N N N 250
PHE CA C N S 251
PHE C C N N 252
PHE O O N N 253
PHE CB C N N 254
PHE CG C Y N 255
PHE CD1 C Y N 256
PHE CD2 C Y N 257
PHE CE1 C Y N 258
PHE CE2 C Y N 259
PHE CZ C Y N 260
PHE OXT O N N 261
PHE H H N N 262
PHE H2 H N N 263
PHE HA H N N 264
PHE HB2 H N N 265
PHE HB3 H N N 266
PHE HD1 H N N 267
PHE HD2 H N N 268
PHE HE1 H N N 269
PHE HE2 H N N 270
PHE HZ H N N 271
PHE HXT H N N 272
PRO N N N N 273
PRO CA C N S 274
PRO C C N N 275
PRO O O N N 276
PRO CB C N N 277
PRO CG C N N 278
PRO CD C N N 279
PRO OXT O N N 280
PRO H H N N 281
PRO HA H N N 282
PRO HB2 H N N 283
PRO HB3 H N N 284
PRO HG2 H N N 285
PRO HG3 H N N 286
PRO HD2 H N N 287
PRO HD3 H N N 288
PRO HXT H N N 289
SER N N N N 290
SER CA C N S 291
SER C C N N 292
SER O O N N 293
SER CB C N N 294
SER OG O N N 295
SER OXT O N N 296
SER H H N N 297
SER H2 H N N 298
SER HA H N N 299
SER HB2 H N N 300
SER HB3 H N N 301
SER HG H N N 302
SER HXT H N N 303
THR N N N N 304
THR CA C N S 305
THR C C N N 306
THR O O N N 307
THR CB C N R 308
THR OG1 O N N 309
THR CG2 C N N 310
THR OXT O N N 311
THR H H N N 312
THR H2 H N N 313
THR HA H N N 314
THR HB H N N 315
THR HG1 H N N 316
THR HG21 H N N 317
THR HG22 H N N 318
THR HG23 H N N 319
THR HXT H N N 320
TRP N N N N 321
TRP CA C N S 322
TRP C C N N 323
TRP O O N N 324
TRP CB C N N 325
TRP CG C Y N 326
TRP CD1 C Y N 327
TRP CD2 C Y N 328
TRP NE1 N Y N 329
TRP CE2 C Y N 330
TRP CE3 C Y N 331
TRP CZ2 C Y N 332
TRP CZ3 C Y N 333
TRP CH2 C Y N 334
TRP OXT O N N 335
TRP H H N N 336
TRP H2 H N N 337
TRP HA H N N 338
TRP HB2 H N N 339
TRP HB3 H N N 340
TRP HD1 H N N 341
TRP HE1 H N N 342
TRP HE3 H N N 343
TRP HZ2 H N N 344
TRP HZ3 H N N 345
TRP HH2 H N N 346
TRP HXT H N N 347
TYR N N N N 348
TYR CA C N S 349
TYR C C N N 350
TYR O O N N 351
TYR CB C N N 352
TYR CG C Y N 353
TYR CD1 C Y N 354
TYR CD2 C Y N 355
TYR CE1 C Y N 356
TYR CE2 C Y N 357
TYR CZ C Y N 358
TYR OH O N N 359
TYR OXT O N N 360
TYR H H N N 361
TYR H2 H N N 362
TYR HA H N N 363
TYR HB2 H N N 364
TYR HB3 H N N 365
TYR HD1 H N N 366
TYR HD2 H N N 367
TYR HE1 H N N 368
TYR HE2 H N N 369
TYR HH H N N 370
TYR HXT H N N 371
VAL N N N N 372
VAL CA C N S 373
VAL C C N N 374
VAL O O N N 375
VAL CB C N N 376
VAL CG1 C N N 377
VAL CG2 C N N 378
VAL OXT O N N 379
VAL H H N N 380
VAL H2 H N N 381
VAL HA H N N 382
VAL HB H N N 383
VAL HG11 H N N 384
VAL HG12 H N N 385
VAL HG13 H N N 386
VAL HG21 H N N 387
VAL HG22 H N N 388
VAL HG23 H N N 389
VAL HXT H N N 390
VDX O2 O N N 391
VDX O3 O N N 392
VDX C1 C N S 393
VDX C2 C N N 394
VDX C3 C N R 395
VDX C4 C N N 396
VDX C5 C N N 397
VDX C6 C N N 398
VDX C7 C N N 399
VDX C8 C N N 400
VDX C9 C N N 401
VDX C10 C N N 402
VDX C11 C N N 403
VDX C12 C N N 404
VDX C13 C N R 405
VDX C14 C N S 406
VDX C15 C N N 407
VDX C16 C N N 408
VDX C17 C N R 409
VDX C18 C N N 410
VDX C19 C N N 411
VDX C20 C N R 412
VDX C21 C N N 413
VDX C22 C N N 414
VDX C23 C N N 415
VDX C24 C N N 416
VDX C25 C N N 417
VDX C26 C N N 418
VDX C27 C N N 419
VDX O1 O N N 420
VDX HO2 H N N 421
VDX HO3 H N N 422
VDX H11 H N N 423
VDX H21 H N N 424
VDX H22 H N N 425
VDX H31 H N N 426
VDX H41 H N N 427
VDX H42 H N N 428
VDX H61 H N N 429
VDX H71 H N N 430
VDX H91 H N N 431
VDX H92 H N N 432
VDX H111 H N N 433
VDX H112 H N N 434
VDX H121 H N N 435
VDX H122 H N N 436
VDX H141 H N N 437
VDX H151 H N N 438
VDX H152 H N N 439
VDX H161 H N N 440
VDX H162 H N N 441
VDX H171 H N N 442
VDX H181 H N N 443
VDX H182 H N N 444
VDX H183 H N N 445
VDX H191 H N N 446
VDX H192 H N N 447
VDX H201 H N N 448
VDX H211 H N N 449
VDX H212 H N N 450
VDX H213 H N N 451
VDX H221 H N N 452
VDX H222 H N N 453
VDX H231 H N N 454
VDX H232 H N N 455
VDX H241 H N N 456
VDX H242 H N N 457
VDX H261 H N N 458
VDX H262 H N N 459
VDX H263 H N N 460
VDX H271 H N N 461
VDX H272 H N N 462
VDX H273 H N N 463
VDX HO1 H N N 464
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
CYS N CA sing N N 70
CYS N H sing N N 71
CYS N H2 sing N N 72
CYS CA C sing N N 73
CYS CA CB sing N N 74
CYS CA HA sing N N 75
CYS C O doub N N 76
CYS C OXT sing N N 77
CYS CB SG sing N N 78
CYS CB HB2 sing N N 79
CYS CB HB3 sing N N 80
CYS SG HG sing N N 81
CYS OXT HXT sing N N 82
GLN N CA sing N N 83
GLN N H sing N N 84
GLN N H2 sing N N 85
GLN CA C sing N N 86
GLN CA CB sing N N 87
GLN CA HA sing N N 88
GLN C O doub N N 89
GLN C OXT sing N N 90
GLN CB CG sing N N 91
GLN CB HB2 sing N N 92
GLN CB HB3 sing N N 93
GLN CG CD sing N N 94
GLN CG HG2 sing N N 95
GLN CG HG3 sing N N 96
GLN CD OE1 doub N N 97
GLN CD NE2 sing N N 98
GLN NE2 HE21 sing N N 99
GLN NE2 HE22 sing N N 100
GLN OXT HXT sing N N 101
GLU N CA sing N N 102
GLU N H sing N N 103
GLU N H2 sing N N 104
GLU CA C sing N N 105
GLU CA CB sing N N 106
GLU CA HA sing N N 107
GLU C O doub N N 108
GLU C OXT sing N N 109
GLU CB CG sing N N 110
GLU CB HB2 sing N N 111
GLU CB HB3 sing N N 112
GLU CG CD sing N N 113
GLU CG HG2 sing N N 114
GLU CG HG3 sing N N 115
GLU CD OE1 doub N N 116
GLU CD OE2 sing N N 117
GLU OE2 HE2 sing N N 118
GLU OXT HXT sing N N 119
GLY N CA sing N N 120
GLY N H sing N N 121
GLY N H2 sing N N 122
GLY CA C sing N N 123
GLY CA HA2 sing N N 124
GLY CA HA3 sing N N 125
GLY C O doub N N 126
GLY C OXT sing N N 127
GLY OXT HXT sing N N 128
HIS N CA sing N N 129
HIS N H sing N N 130
HIS N H2 sing N N 131
HIS CA C sing N N 132
HIS CA CB sing N N 133
HIS CA HA sing N N 134
HIS C O doub N N 135
HIS C OXT sing N N 136
HIS CB CG sing N N 137
HIS CB HB2 sing N N 138
HIS CB HB3 sing N N 139
HIS CG ND1 sing Y N 140
HIS CG CD2 doub Y N 141
HIS ND1 CE1 doub Y N 142
HIS ND1 HD1 sing N N 143
HIS CD2 NE2 sing Y N 144
HIS CD2 HD2 sing N N 145
HIS CE1 NE2 sing Y N 146
HIS CE1 HE1 sing N N 147
HIS NE2 HE2 sing N N 148
HIS OXT HXT sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
ILE N CA sing N N 152
ILE N H sing N N 153
ILE N H2 sing N N 154
ILE CA C sing N N 155
ILE CA CB sing N N 156
ILE CA HA sing N N 157
ILE C O doub N N 158
ILE C OXT sing N N 159
ILE CB CG1 sing N N 160
ILE CB CG2 sing N N 161
ILE CB HB sing N N 162
ILE CG1 CD1 sing N N 163
ILE CG1 HG12 sing N N 164
ILE CG1 HG13 sing N N 165
ILE CG2 HG21 sing N N 166
ILE CG2 HG22 sing N N 167
ILE CG2 HG23 sing N N 168
ILE CD1 HD11 sing N N 169
ILE CD1 HD12 sing N N 170
ILE CD1 HD13 sing N N 171
ILE OXT HXT sing N N 172
LEU N CA sing N N 173
LEU N H sing N N 174
LEU N H2 sing N N 175
LEU CA C sing N N 176
LEU CA CB sing N N 177
LEU CA HA sing N N 178
LEU C O doub N N 179
LEU C OXT sing N N 180
LEU CB CG sing N N 181
LEU CB HB2 sing N N 182
LEU CB HB3 sing N N 183
LEU CG CD1 sing N N 184
LEU CG CD2 sing N N 185
LEU CG HG sing N N 186
LEU CD1 HD11 sing N N 187
LEU CD1 HD12 sing N N 188
LEU CD1 HD13 sing N N 189
LEU CD2 HD21 sing N N 190
LEU CD2 HD22 sing N N 191
LEU CD2 HD23 sing N N 192
LEU OXT HXT sing N N 193
LYS N CA sing N N 194
LYS N H sing N N 195
LYS N H2 sing N N 196
LYS CA C sing N N 197
LYS CA CB sing N N 198
LYS CA HA sing N N 199
LYS C O doub N N 200
LYS C OXT sing N N 201
LYS CB CG sing N N 202
LYS CB HB2 sing N N 203
LYS CB HB3 sing N N 204
LYS CG CD sing N N 205
LYS CG HG2 sing N N 206
LYS CG HG3 sing N N 207
LYS CD CE sing N N 208
LYS CD HD2 sing N N 209
LYS CD HD3 sing N N 210
LYS CE NZ sing N N 211
LYS CE HE2 sing N N 212
LYS CE HE3 sing N N 213
LYS NZ HZ1 sing N N 214
LYS NZ HZ2 sing N N 215
LYS NZ HZ3 sing N N 216
LYS OXT HXT sing N N 217
MET N CA sing N N 218
MET N H sing N N 219
MET N H2 sing N N 220
MET CA C sing N N 221
MET CA CB sing N N 222
MET CA HA sing N N 223
MET C O doub N N 224
MET C OXT sing N N 225
MET CB CG sing N N 226
MET CB HB2 sing N N 227
MET CB HB3 sing N N 228
MET CG SD sing N N 229
MET CG HG2 sing N N 230
MET CG HG3 sing N N 231
MET SD CE sing N N 232
MET CE HE1 sing N N 233
MET CE HE2 sing N N 234
MET CE HE3 sing N N 235
MET OXT HXT sing N N 236
PHE N CA sing N N 237
PHE N H sing N N 238
PHE N H2 sing N N 239
PHE CA C sing N N 240
PHE CA CB sing N N 241
PHE CA HA sing N N 242
PHE C O doub N N 243
PHE C OXT sing N N 244
PHE CB CG sing N N 245
PHE CB HB2 sing N N 246
PHE CB HB3 sing N N 247
PHE CG CD1 doub Y N 248
PHE CG CD2 sing Y N 249
PHE CD1 CE1 sing Y N 250
PHE CD1 HD1 sing N N 251
PHE CD2 CE2 doub Y N 252
PHE CD2 HD2 sing N N 253
PHE CE1 CZ doub Y N 254
PHE CE1 HE1 sing N N 255
PHE CE2 CZ sing Y N 256
PHE CE2 HE2 sing N N 257
PHE CZ HZ sing N N 258
PHE OXT HXT sing N N 259
PRO N CA sing N N 260
PRO N CD sing N N 261
PRO N H sing N N 262
PRO CA C sing N N 263
PRO CA CB sing N N 264
PRO CA HA sing N N 265
PRO C O doub N N 266
PRO C OXT sing N N 267
PRO CB CG sing N N 268
PRO CB HB2 sing N N 269
PRO CB HB3 sing N N 270
PRO CG CD sing N N 271
PRO CG HG2 sing N N 272
PRO CG HG3 sing N N 273
PRO CD HD2 sing N N 274
PRO CD HD3 sing N N 275
PRO OXT HXT sing N N 276
SER N CA sing N N 277
SER N H sing N N 278
SER N H2 sing N N 279
SER CA C sing N N 280
SER CA CB sing N N 281
SER CA HA sing N N 282
SER C O doub N N 283
SER C OXT sing N N 284
SER CB OG sing N N 285
SER CB HB2 sing N N 286
SER CB HB3 sing N N 287
SER OG HG sing N N 288
SER OXT HXT sing N N 289
THR N CA sing N N 290
THR N H sing N N 291
THR N H2 sing N N 292
THR CA C sing N N 293
THR CA CB sing N N 294
THR CA HA sing N N 295
THR C O doub N N 296
THR C OXT sing N N 297
THR CB OG1 sing N N 298
THR CB CG2 sing N N 299
THR CB HB sing N N 300
THR OG1 HG1 sing N N 301
THR CG2 HG21 sing N N 302
THR CG2 HG22 sing N N 303
THR CG2 HG23 sing N N 304
THR OXT HXT sing N N 305
TRP N CA sing N N 306
TRP N H sing N N 307
TRP N H2 sing N N 308
TRP CA C sing N N 309
TRP CA CB sing N N 310
TRP CA HA sing N N 311
TRP C O doub N N 312
TRP C OXT sing N N 313
TRP CB CG sing N N 314
TRP CB HB2 sing N N 315
TRP CB HB3 sing N N 316
TRP CG CD1 doub Y N 317
TRP CG CD2 sing Y N 318
TRP CD1 NE1 sing Y N 319
TRP CD1 HD1 sing N N 320
TRP CD2 CE2 doub Y N 321
TRP CD2 CE3 sing Y N 322
TRP NE1 CE2 sing Y N 323
TRP NE1 HE1 sing N N 324
TRP CE2 CZ2 sing Y N 325
TRP CE3 CZ3 doub Y N 326
TRP CE3 HE3 sing N N 327
TRP CZ2 CH2 doub Y N 328
TRP CZ2 HZ2 sing N N 329
TRP CZ3 CH2 sing Y N 330
TRP CZ3 HZ3 sing N N 331
TRP CH2 HH2 sing N N 332
TRP OXT HXT sing N N 333
TYR N CA sing N N 334
TYR N H sing N N 335
TYR N H2 sing N N 336
TYR CA C sing N N 337
TYR CA CB sing N N 338
TYR CA HA sing N N 339
TYR C O doub N N 340
TYR C OXT sing N N 341
TYR CB CG sing N N 342
TYR CB HB2 sing N N 343
TYR CB HB3 sing N N 344
TYR CG CD1 doub Y N 345
TYR CG CD2 sing Y N 346
TYR CD1 CE1 sing Y N 347
TYR CD1 HD1 sing N N 348
TYR CD2 CE2 doub Y N 349
TYR CD2 HD2 sing N N 350
TYR CE1 CZ doub Y N 351
TYR CE1 HE1 sing N N 352
TYR CE2 CZ sing Y N 353
TYR CE2 HE2 sing N N 354
TYR CZ OH sing N N 355
TYR OH HH sing N N 356
TYR OXT HXT sing N N 357
VAL N CA sing N N 358
VAL N H sing N N 359
VAL N H2 sing N N 360
VAL CA C sing N N 361
VAL CA CB sing N N 362
VAL CA HA sing N N 363
VAL C O doub N N 364
VAL C OXT sing N N 365
VAL CB CG1 sing N N 366
VAL CB CG2 sing N N 367
VAL CB HB sing N N 368
VAL CG1 HG11 sing N N 369
VAL CG1 HG12 sing N N 370
VAL CG1 HG13 sing N N 371
VAL CG2 HG21 sing N N 372
VAL CG2 HG22 sing N N 373
VAL CG2 HG23 sing N N 374
VAL OXT HXT sing N N 375
VDX O2 C3 sing N N 376
VDX O2 HO2 sing N N 377
VDX O3 C25 sing N N 378
VDX O3 HO3 sing N N 379
VDX C1 C2 sing N N 380
VDX C1 C10 sing N N 381
VDX C1 O1 sing N N 382
VDX C1 H11 sing N N 383
VDX C2 C3 sing N N 384
VDX C2 H21 sing N N 385
VDX C2 H22 sing N N 386
VDX C3 C4 sing N N 387
VDX C3 H31 sing N N 388
VDX C4 C5 sing N N 389
VDX C4 H41 sing N N 390
VDX C4 H42 sing N N 391
VDX C5 C6 doub N Z 392
VDX C5 C10 sing N N 393
VDX C6 C7 sing N N 394
VDX C6 H61 sing N N 395
VDX C7 C8 doub N E 396
VDX C7 H71 sing N N 397
VDX C8 C9 sing N N 398
VDX C8 C14 sing N N 399
VDX C9 C11 sing N N 400
VDX C9 H91 sing N N 401
VDX C9 H92 sing N N 402
VDX C10 C19 doub N N 403
VDX C11 C12 sing N N 404
VDX C11 H111 sing N N 405
VDX C11 H112 sing N N 406
VDX C12 C13 sing N N 407
VDX C12 H121 sing N N 408
VDX C12 H122 sing N N 409
VDX C13 C14 sing N N 410
VDX C13 C17 sing N N 411
VDX C13 C18 sing N N 412
VDX C14 C15 sing N N 413
VDX C14 H141 sing N N 414
VDX C15 C16 sing N N 415
VDX C15 H151 sing N N 416
VDX C15 H152 sing N N 417
VDX C16 C17 sing N N 418
VDX C16 H161 sing N N 419
VDX C16 H162 sing N N 420
VDX C17 C20 sing N N 421
VDX C17 H171 sing N N 422
VDX C18 H181 sing N N 423
VDX C18 H182 sing N N 424
VDX C18 H183 sing N N 425
VDX C19 H191 sing N N 426
VDX C19 H192 sing N N 427
VDX C20 C21 sing N N 428
VDX C20 C22 sing N N 429
VDX C20 H201 sing N N 430
VDX C21 H211 sing N N 431
VDX C21 H212 sing N N 432
VDX C21 H213 sing N N 433
VDX C22 C23 sing N N 434
VDX C22 H221 sing N N 435
VDX C22 H222 sing N N 436
VDX C23 C24 sing N N 437
VDX C23 H231 sing N N 438
VDX C23 H232 sing N N 439
VDX C24 C25 sing N N 440
VDX C24 H241 sing N N 441
VDX C24 H242 sing N N 442
VDX C25 C26 sing N N 443
VDX C25 C27 sing N N 444
VDX C26 H261 sing N N 445
VDX C26 H262 sing N N 446
VDX C26 H263 sing N N 447
VDX C27 H271 sing N N 448
VDX C27 H272 sing N N 449
VDX C27 H273 sing N N 450
VDX O1 HO1 sing N N 451
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 '5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL' VDX
4 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1RJK
_pdbx_initial_refinement_model.details 'PDB entry 1RJK'
#