HEADER ELECTRON TRANSPORT 17-MAY-97 1RKR TITLE CRYSTAL STRUCTURE OF AZURIN-I FROM ALCALIGENES XYLOSOXIDANS NCIMB TITLE 2 11015 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AZURIN-I; COMPND 3 CHAIN: A, B, C, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACHROMOBACTER XYLOSOXIDANS; SOURCE 3 ORGANISM_TAXID: 85698; SOURCE 4 STRAIN: NCIMB 11015 KEYWDS ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.LI,T.INOUE,M.GOTOWDA,S.SUZUKI,K.YAMAGUCHI,K.KATAOKA,Y.KAI REVDAT 5 20-NOV-24 1RKR 1 REMARK REVDAT 4 03-APR-24 1RKR 1 REMARK LINK REVDAT 3 24-FEB-09 1RKR 1 VERSN REVDAT 2 01-APR-03 1RKR 1 JRNL REVDAT 1 20-MAY-98 1RKR 0 JRNL AUTH C.LI,T.INOUE,M.GOTOWDA,S.SUZUKI,K.YAMAGUCHI,K.KUNISHIGE, JRNL AUTH 2 Y.KAI JRNL TITL STRUCTURE OF AZURIN I FROM THE DENITRIFYING BACTERIUM JRNL TITL 2 ALCALIGENES XYLOSOXIDANS NCIMB 11015 AT 2.45 A RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 54 347 1998 JRNL REFN ISSN 0907-4449 JRNL PMID 9761902 JRNL DOI 10.1107/S0907444997010974 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.YAMAGUCHI,DELIGEER,N.NAKAMURA,S.SHIDARA,H.IWASAKI,S.SUZUKI REMARK 1 TITL ISOLATION AND CHARACTERIZATION OF TWO DISTINCT AZURINS FROM REMARK 1 TITL 2 ALCALIGENES XYLOSOXIDANS SUBSP. XYLOSOXIDANS NCIB11015 OR REMARK 1 TITL 3 GIFU1051 REMARK 1 REF CHEM.LETT. V. 5 353 1995 REMARK 1 REFN ISSN 0366-7022 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.INOUE,N.SHIBATA,H.NAKANISHI,S.KOYAMA,H.ISHII,Y.KAI, REMARK 1 AUTH 2 S.HARADA,N.KASAI,Y.OHSHIRO,S.SUZUKI,T.KOHZUMA,K.YAMAGUCHI, REMARK 1 AUTH 3 S.SHIDARA,H.IWASAKI REMARK 1 TITL STRUCTURE OF AZURIN FROM ACHROMOBACTER XYLOSOXIDANS REMARK 1 TITL 2 NCIB11015 AT 2.5 A RESOLUTION REMARK 1 REF J.BIOCHEM.(TOKYO) V. 116 1193 1994 REMARK 1 REFN ISSN 0021-924X REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 58.6 REMARK 3 NUMBER OF REFLECTIONS : 10895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 568 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3888 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.024 REMARK 3 BOND ANGLES (DEGREES) : 5.488 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.32 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.473 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176104. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-96 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROCESS REMARK 200 DATA SCALING SOFTWARE : PROCESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11462 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 1.700 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.17100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: AZURIN-II FROM THE SAME BACTERIUM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING-DROP VAPOR DIFFUSION METHOD, REMARK 280 PH 8.0, VAPOR DIFFUSION - HANGING DROP, VAPOR DIFFUSION, HANGING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.33500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.33500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 35 NE2 HIS A 35 CD2 -0.066 REMARK 500 HIS A 46 NE2 HIS A 46 CD2 -0.074 REMARK 500 HIS A 83 NE2 HIS A 83 CD2 -0.069 REMARK 500 HIS B 35 NE2 HIS B 35 CD2 -0.069 REMARK 500 HIS B 46 NE2 HIS B 46 CD2 -0.070 REMARK 500 HIS B 83 NE2 HIS B 83 CD2 -0.069 REMARK 500 HIS C 35 NE2 HIS C 35 CD2 -0.075 REMARK 500 HIS C 46 NE2 HIS C 46 CD2 -0.068 REMARK 500 HIS C 83 NE2 HIS C 83 CD2 -0.070 REMARK 500 HIS C 117 NE2 HIS C 117 CD2 -0.076 REMARK 500 HIS D 35 NE2 HIS D 35 CD2 -0.067 REMARK 500 HIS D 46 NE2 HIS D 46 CD2 -0.067 REMARK 500 HIS D 83 NE2 HIS D 83 CD2 -0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 6 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 TRP A 48 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP A 48 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 TYR A 108 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 TRP B 48 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP B 48 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 LYS B 122 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 TRP C 48 CD1 - CG - CD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 TRP C 48 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG C 79 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG C 79 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR C 110 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TRP D 48 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP D 48 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 10 -169.68 -113.92 REMARK 500 MET B 44 56.56 -144.70 REMARK 500 PRO B 115 114.36 -33.91 REMARK 500 PRO C 115 107.40 -36.32 REMARK 500 MET D 44 46.74 -147.28 REMARK 500 PRO D 115 112.46 -33.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 200 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 45 O REMARK 620 2 HIS A 46 ND1 74.2 REMARK 620 3 CYS A 112 SG 109.2 128.8 REMARK 620 4 HIS A 117 ND1 98.4 111.4 118.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 45 O REMARK 620 2 HIS B 46 ND1 76.4 REMARK 620 3 CYS B 112 SG 111.3 131.0 REMARK 620 4 HIS B 117 ND1 87.5 111.0 117.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY C 45 O REMARK 620 2 HIS C 46 ND1 81.3 REMARK 620 3 CYS C 112 SG 106.6 124.9 REMARK 620 4 HIS C 117 ND1 91.4 114.0 120.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D 203 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY D 45 O REMARK 620 2 HIS D 46 ND1 76.4 REMARK 620 3 CYS D 112 SG 113.9 123.1 REMARK 620 4 HIS D 117 ND1 92.1 109.5 124.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU D 203 DBREF 1RKR A 1 129 UNP P56547 AZUR1_ALCXX 1 129 DBREF 1RKR B 1 129 UNP P56547 AZUR1_ALCXX 1 129 DBREF 1RKR C 1 129 UNP P56547 AZUR1_ALCXX 1 129 DBREF 1RKR D 1 129 UNP P56547 AZUR1_ALCXX 1 129 SEQRES 1 A 129 ALA GLU CYS SER VAL ASP ILE ALA GLY ASN ASP GLY MET SEQRES 2 A 129 GLN PHE ASP LYS LYS GLU ILE THR VAL SER LYS SER CYS SEQRES 3 A 129 LYS GLN PHE THR VAL ASN LEU LYS HIS PRO GLY LYS LEU SEQRES 4 A 129 ALA LYS ASN VAL MET GLY HIS ASN TRP VAL LEU THR LYS SEQRES 5 A 129 GLN ALA ASP MET GLN GLY ALA VAL ASN ASP GLY MET ALA SEQRES 6 A 129 ALA GLY LEU ASP ASN ASN TYR VAL LYS LYS ASP ASP ALA SEQRES 7 A 129 ARG VAL ILE ALA HIS THR LYS VAL ILE GLY GLY GLY GLU SEQRES 8 A 129 THR ASP SER VAL THR PHE ASP VAL SER LYS LEU ALA ALA SEQRES 9 A 129 GLY GLU ASP TYR ALA TYR PHE CYS SER PHE PRO GLY HIS SEQRES 10 A 129 PHE ALA LEU MET LYS GLY VAL LEU LYS LEU VAL ASP SEQRES 1 B 129 ALA GLU CYS SER VAL ASP ILE ALA GLY ASN ASP GLY MET SEQRES 2 B 129 GLN PHE ASP LYS LYS GLU ILE THR VAL SER LYS SER CYS SEQRES 3 B 129 LYS GLN PHE THR VAL ASN LEU LYS HIS PRO GLY LYS LEU SEQRES 4 B 129 ALA LYS ASN VAL MET GLY HIS ASN TRP VAL LEU THR LYS SEQRES 5 B 129 GLN ALA ASP MET GLN GLY ALA VAL ASN ASP GLY MET ALA SEQRES 6 B 129 ALA GLY LEU ASP ASN ASN TYR VAL LYS LYS ASP ASP ALA SEQRES 7 B 129 ARG VAL ILE ALA HIS THR LYS VAL ILE GLY GLY GLY GLU SEQRES 8 B 129 THR ASP SER VAL THR PHE ASP VAL SER LYS LEU ALA ALA SEQRES 9 B 129 GLY GLU ASP TYR ALA TYR PHE CYS SER PHE PRO GLY HIS SEQRES 10 B 129 PHE ALA LEU MET LYS GLY VAL LEU LYS LEU VAL ASP SEQRES 1 C 129 ALA GLU CYS SER VAL ASP ILE ALA GLY ASN ASP GLY MET SEQRES 2 C 129 GLN PHE ASP LYS LYS GLU ILE THR VAL SER LYS SER CYS SEQRES 3 C 129 LYS GLN PHE THR VAL ASN LEU LYS HIS PRO GLY LYS LEU SEQRES 4 C 129 ALA LYS ASN VAL MET GLY HIS ASN TRP VAL LEU THR LYS SEQRES 5 C 129 GLN ALA ASP MET GLN GLY ALA VAL ASN ASP GLY MET ALA SEQRES 6 C 129 ALA GLY LEU ASP ASN ASN TYR VAL LYS LYS ASP ASP ALA SEQRES 7 C 129 ARG VAL ILE ALA HIS THR LYS VAL ILE GLY GLY GLY GLU SEQRES 8 C 129 THR ASP SER VAL THR PHE ASP VAL SER LYS LEU ALA ALA SEQRES 9 C 129 GLY GLU ASP TYR ALA TYR PHE CYS SER PHE PRO GLY HIS SEQRES 10 C 129 PHE ALA LEU MET LYS GLY VAL LEU LYS LEU VAL ASP SEQRES 1 D 129 ALA GLU CYS SER VAL ASP ILE ALA GLY ASN ASP GLY MET SEQRES 2 D 129 GLN PHE ASP LYS LYS GLU ILE THR VAL SER LYS SER CYS SEQRES 3 D 129 LYS GLN PHE THR VAL ASN LEU LYS HIS PRO GLY LYS LEU SEQRES 4 D 129 ALA LYS ASN VAL MET GLY HIS ASN TRP VAL LEU THR LYS SEQRES 5 D 129 GLN ALA ASP MET GLN GLY ALA VAL ASN ASP GLY MET ALA SEQRES 6 D 129 ALA GLY LEU ASP ASN ASN TYR VAL LYS LYS ASP ASP ALA SEQRES 7 D 129 ARG VAL ILE ALA HIS THR LYS VAL ILE GLY GLY GLY GLU SEQRES 8 D 129 THR ASP SER VAL THR PHE ASP VAL SER LYS LEU ALA ALA SEQRES 9 D 129 GLY GLU ASP TYR ALA TYR PHE CYS SER PHE PRO GLY HIS SEQRES 10 D 129 PHE ALA LEU MET LYS GLY VAL LEU LYS LEU VAL ASP HET CU A 200 1 HET CU B 201 1 HET CU C 202 1 HET CU D 203 1 HETNAM CU COPPER (II) ION FORMUL 5 CU 4(CU 2+) FORMUL 9 HOH *81(H2 O) HELIX 1 1 LYS A 41 MET A 44 1 4 HELIX 2 2 GLN A 53 ALA A 66 5 14 HELIX 3 3 LEU A 68 ASN A 70 5 3 HELIX 4 4 VAL A 99 LYS A 101 5 3 HELIX 5 5 HIS A 117 ALA A 119 5 3 HELIX 6 6 LYS B 41 MET B 44 1 4 HELIX 7 7 GLN B 53 MET B 64 5 12 HELIX 8 8 LEU B 68 ASN B 70 5 3 HELIX 9 9 VAL B 99 LYS B 101 5 3 HELIX 10 10 HIS B 117 ALA B 119 5 3 HELIX 11 11 LYS C 41 MET C 44 1 4 HELIX 12 12 GLN C 53 ALA C 66 5 14 HELIX 13 13 LEU C 68 ASN C 70 5 3 HELIX 14 14 VAL C 99 LYS C 101 5 3 HELIX 15 15 HIS C 117 ALA C 119 5 3 HELIX 16 16 LYS D 41 MET D 44 1 4 HELIX 17 17 GLN D 53 ALA D 66 5 14 HELIX 18 18 LEU D 68 ASN D 70 5 3 HELIX 19 19 VAL D 99 LYS D 101 5 3 HELIX 20 20 HIS D 117 ALA D 119 5 3 SHEET 1 A 3 SER A 4 ALA A 8 0 SHEET 2 A 3 GLN A 28 LYS A 34 1 N THR A 30 O VAL A 5 SHEET 3 A 3 THR A 92 ASP A 98 -1 N PHE A 97 O PHE A 29 SHEET 1 B 4 GLU A 19 SER A 23 0 SHEET 2 B 4 LYS A 122 VAL A 128 1 N VAL A 124 O ILE A 20 SHEET 3 B 4 TYR A 108 PHE A 111 -1 N TYR A 110 O GLY A 123 SHEET 4 B 4 VAL A 49 LYS A 52 -1 N THR A 51 O ALA A 109 SHEET 1 C 3 SER B 4 ALA B 8 0 SHEET 2 C 3 GLN B 28 LYS B 34 1 N THR B 30 O VAL B 5 SHEET 3 C 3 THR B 92 ASP B 98 -1 N PHE B 97 O PHE B 29 SHEET 1 D 4 GLU B 19 SER B 23 0 SHEET 2 D 4 LYS B 122 VAL B 128 1 N VAL B 124 O ILE B 20 SHEET 3 D 4 TYR B 108 PHE B 111 -1 N TYR B 110 O GLY B 123 SHEET 4 D 4 VAL B 49 LYS B 52 -1 N THR B 51 O ALA B 109 SHEET 1 E 3 SER C 4 ALA C 8 0 SHEET 2 E 3 GLN C 28 LYS C 34 1 N THR C 30 O VAL C 5 SHEET 3 E 3 THR C 92 ASP C 98 -1 N PHE C 97 O PHE C 29 SHEET 1 F 4 GLU C 19 SER C 23 0 SHEET 2 F 4 LYS C 122 VAL C 128 1 N VAL C 124 O ILE C 20 SHEET 3 F 4 TYR C 108 PHE C 111 -1 N TYR C 110 O GLY C 123 SHEET 4 F 4 VAL C 49 LYS C 52 -1 N THR C 51 O ALA C 109 SHEET 1 G 3 SER D 4 ALA D 8 0 SHEET 2 G 3 GLN D 28 LYS D 34 1 N THR D 30 O VAL D 5 SHEET 3 G 3 THR D 92 ASP D 98 -1 N PHE D 97 O PHE D 29 SHEET 1 H 4 GLU D 19 SER D 23 0 SHEET 2 H 4 LYS D 122 VAL D 128 1 N VAL D 124 O ILE D 20 SHEET 3 H 4 TYR D 108 PHE D 111 -1 N TYR D 110 O GLY D 123 SHEET 4 H 4 VAL D 49 LYS D 52 -1 N THR D 51 O ALA D 109 SSBOND 1 CYS A 3 CYS A 26 1555 1555 2.02 SSBOND 2 CYS B 3 CYS B 26 1555 1555 2.02 SSBOND 3 CYS C 3 CYS C 26 1555 1555 2.02 SSBOND 4 CYS D 3 CYS D 26 1555 1555 2.01 LINK O GLY A 45 CU CU A 200 1555 1555 2.51 LINK ND1 HIS A 46 CU CU A 200 1555 1555 2.02 LINK SG CYS A 112 CU CU A 200 1555 1555 2.14 LINK ND1 HIS A 117 CU CU A 200 1555 1555 1.93 LINK O GLY B 45 CU CU B 201 1555 1555 2.46 LINK ND1 HIS B 46 CU CU B 201 1555 1555 1.96 LINK SG CYS B 112 CU CU B 201 1555 1555 2.14 LINK ND1 HIS B 117 CU CU B 201 1555 1555 1.99 LINK O GLY C 45 CU CU C 202 1555 1555 2.49 LINK ND1 HIS C 46 CU CU C 202 1555 1555 1.88 LINK SG CYS C 112 CU CU C 202 1555 1555 2.24 LINK ND1 HIS C 117 CU CU C 202 1555 1555 1.87 LINK O GLY D 45 CU CU D 203 1555 1555 2.59 LINK ND1 HIS D 46 CU CU D 203 1555 1555 2.03 LINK SG CYS D 112 CU CU D 203 1555 1555 2.12 LINK ND1 HIS D 117 CU CU D 203 1555 1555 1.91 SITE 1 AC1 6 GLY A 45 HIS A 46 CYS A 112 PHE A 114 SITE 2 AC1 6 HIS A 117 MET A 121 SITE 1 AC2 5 GLY B 45 HIS B 46 CYS B 112 HIS B 117 SITE 2 AC2 5 MET B 121 SITE 1 AC3 5 GLY C 45 HIS C 46 CYS C 112 HIS C 117 SITE 2 AC3 5 MET C 121 SITE 1 AC4 5 GLY D 45 HIS D 46 CYS D 112 HIS D 117 SITE 2 AC4 5 MET D 121 CRYST1 130.670 54.260 74.550 90.00 95.99 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007653 0.000000 0.000803 0.00000 SCALE2 0.000000 0.018430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013487 0.00000