HEADER HYDROLASE 01-DEC-03 1RO6 TITLE CRYSTAL STRUCTURE OF PDE4B2B COMPLEXED WITH ROLIPRAM (R & S) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: DPDE4, PDE32, PDE4B2B; COMPND 6 EC: 3.1.4.17; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE4B; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469 KEYWDS PDE, ROLIPRAM, CRYSTAL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.X.XU,W.J.ROCQUE,M.H.LAMBERT,D.E.VANDERWALL,R.T.NOLTE REVDAT 5 03-APR-24 1RO6 1 REMARK REVDAT 4 14-FEB-24 1RO6 1 REMARK REVDAT 3 27-OCT-21 1RO6 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1RO6 1 VERSN REVDAT 1 07-DEC-04 1RO6 0 JRNL AUTH R.X.XU,W.J.ROCQUE,M.H.LAMBERT,D.E.VANDERWALL,M.A.LUTHER, JRNL AUTH 2 R.T.NOLTE JRNL TITL CRYSTAL STRUCTURES OF THE CATALYTIC DOMAIN OF JRNL TITL 2 PHOSPHODIESTERASE 4B COMPLEXED WITH AMP, 8-BR-AMP, AND JRNL TITL 3 ROLIPRAM. JRNL REF J.MOL.BIOL. V. 337 355 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15003452 JRNL DOI 10.1016/J.JMB.2004.01.040 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : CNS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 55413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2248 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.261 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MASK REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RO6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000020909. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-99 REMARK 200 TEMPERATURE (KELVIN) : 98 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55413 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.05600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.34800 REMARK 200 R SYM FOR SHELL (I) : 0.34800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: HOLO-CATALYTIC DOMAIN OF PDE4B2B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3000, SODIUM ACETATE, GLYCEROL, REMARK 280 SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.39000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.39000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.57400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 80.44550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.57400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 80.44550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.39000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.57400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 80.44550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.39000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.57400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 80.44550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 151 REMARK 465 ASN A 496 REMARK 465 ARG A 497 REMARK 465 ASP A 498 REMARK 465 CYS A 499 REMARK 465 GLN A 500 REMARK 465 GLY A 501 REMARK 465 LEU A 502 REMARK 465 MET A 503 REMARK 465 GLU A 504 REMARK 465 LYS A 505 REMARK 465 PHE A 506 REMARK 465 GLN A 507 REMARK 465 PHE A 508 REMARK 465 GLU A 509 REMARK 465 LEU A 510 REMARK 465 THR A 511 REMARK 465 LEU A 512 REMARK 465 ASP A 513 REMARK 465 GLU A 514 REMARK 465 GLU A 515 REMARK 465 ASP A 516 REMARK 465 SER A 517 REMARK 465 GLU A 518 REMARK 465 GLY A 519 REMARK 465 PRO A 520 REMARK 465 GLU A 521 REMARK 465 LYS A 522 REMARK 465 GLU A 523 REMARK 465 GLY A 524 REMARK 465 GLU A 525 REMARK 465 GLY A 526 REMARK 465 HIS A 527 REMARK 465 SER A 528 REMARK 465 MET B 151 REMARK 465 ASN B 496 REMARK 465 ARG B 497 REMARK 465 ASP B 498 REMARK 465 CYS B 499 REMARK 465 GLN B 500 REMARK 465 GLY B 501 REMARK 465 LEU B 502 REMARK 465 MET B 503 REMARK 465 GLU B 504 REMARK 465 LYS B 505 REMARK 465 PHE B 506 REMARK 465 GLN B 507 REMARK 465 PHE B 508 REMARK 465 GLU B 509 REMARK 465 LEU B 510 REMARK 465 THR B 511 REMARK 465 LEU B 512 REMARK 465 ASP B 513 REMARK 465 GLU B 514 REMARK 465 GLU B 515 REMARK 465 ASP B 516 REMARK 465 SER B 517 REMARK 465 GLU B 518 REMARK 465 GLY B 519 REMARK 465 PRO B 520 REMARK 465 GLU B 521 REMARK 465 LYS B 522 REMARK 465 GLU B 523 REMARK 465 GLY B 524 REMARK 465 GLU B 525 REMARK 465 GLY B 526 REMARK 465 HIS B 527 REMARK 465 SER B 528 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 485 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 257 14.36 57.77 REMARK 500 ASP A 299 13.56 53.67 REMARK 500 SER A 301 51.19 39.68 REMARK 500 ILE A 450 -58.70 -131.25 REMARK 500 GLN A 486 38.09 88.62 REMARK 500 PRO A 490 68.04 13.96 REMARK 500 PRO A 491 69.29 -65.08 REMARK 500 LEU A 492 -1.20 175.75 REMARK 500 ASP A 493 5.49 -177.76 REMARK 500 GLU A 494 -148.15 -162.25 REMARK 500 ASP B 299 5.47 59.09 REMARK 500 SER B 301 50.01 38.79 REMARK 500 ASP B 375 46.27 -94.98 REMARK 500 LEU B 393 43.93 -107.26 REMARK 500 GLU B 427 -108.74 -58.96 REMARK 500 ILE B 428 121.23 -178.82 REMARK 500 ILE B 450 -63.93 -127.79 REMARK 500 PRO B 485 173.25 -45.47 REMARK 500 GLN B 486 166.16 33.88 REMARK 500 ALA B 487 105.95 65.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 529 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 238 NE2 REMARK 620 2 HIS A 274 NE2 107.9 REMARK 620 3 ASP A 275 OD2 91.5 86.1 REMARK 620 4 ASP A 392 OD1 90.8 90.3 176.1 REMARK 620 5 HOH A 788 O 151.5 100.6 91.2 88.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 530 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 275 OD1 REMARK 620 2 HOH A 618 O 78.3 REMARK 620 3 HOH A 650 O 132.5 74.3 REMARK 620 4 HOH A 788 O 86.4 152.1 100.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 529 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 238 NE2 REMARK 620 2 HIS B 274 NE2 108.3 REMARK 620 3 ASP B 275 OD2 90.3 88.9 REMARK 620 4 ASP B 392 OD1 95.7 86.1 173.2 REMARK 620 5 HOH B 715 O 152.1 99.5 91.5 84.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 530 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 695 O REMARK 620 2 HOH B 706 O 58.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 529 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 529 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 530 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 530 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARS A 531 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ROL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ROL B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RO9 RELATED DB: PDB REMARK 900 RELATED ID: 1ROR RELATED DB: PDB DBREF 1RO6 A 152 528 UNP Q07343 PDE4B_HUMAN 324 700 DBREF 1RO6 B 152 528 UNP Q07343 PDE4B_HUMAN 324 700 SEQADV 1RO6 MET A 151 UNP Q07343 INITIATING METHIONINE SEQADV 1RO6 ALA A 487 UNP Q07343 SER 659 ENGINEERED MUTATION SEQADV 1RO6 ALA A 489 UNP Q07343 SER 661 ENGINEERED MUTATION SEQADV 1RO6 MET B 151 UNP Q07343 INITIATING METHIONINE SEQADV 1RO6 ALA B 487 UNP Q07343 SER 659 ENGINEERED MUTATION SEQADV 1RO6 ALA B 489 UNP Q07343 SER 661 ENGINEERED MUTATION SEQRES 1 A 378 MET SER ILE SER ARG PHE GLY VAL ASN THR GLU ASN GLU SEQRES 2 A 378 ASP HIS LEU ALA LYS GLU LEU GLU ASP LEU ASN LYS TRP SEQRES 3 A 378 GLY LEU ASN ILE PHE ASN VAL ALA GLY TYR SER HIS ASN SEQRES 4 A 378 ARG PRO LEU THR CYS ILE MET TYR ALA ILE PHE GLN GLU SEQRES 5 A 378 ARG ASP LEU LEU LYS THR PHE ARG ILE SER SER ASP THR SEQRES 6 A 378 PHE ILE THR TYR MET MET THR LEU GLU ASP HIS TYR HIS SEQRES 7 A 378 SER ASP VAL ALA TYR HIS ASN SER LEU HIS ALA ALA ASP SEQRES 8 A 378 VAL ALA GLN SER THR HIS VAL LEU LEU SER THR PRO ALA SEQRES 9 A 378 LEU ASP ALA VAL PHE THR ASP LEU GLU ILE LEU ALA ALA SEQRES 10 A 378 ILE PHE ALA ALA ALA ILE HIS ASP VAL ASP HIS PRO GLY SEQRES 11 A 378 VAL SER ASN GLN PHE LEU ILE ASN THR ASN SER GLU LEU SEQRES 12 A 378 ALA LEU MET TYR ASN ASP GLU SER VAL LEU GLU ASN HIS SEQRES 13 A 378 HIS LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU GLU HIS SEQRES 14 A 378 CYS ASP ILE PHE MET ASN LEU THR LYS LYS GLN ARG GLN SEQRES 15 A 378 THR LEU ARG LYS MET VAL ILE ASP MET VAL LEU ALA THR SEQRES 16 A 378 ASP MET SER LYS HIS MET SER LEU LEU ALA ASP LEU LYS SEQRES 17 A 378 THR MET VAL GLU THR LYS LYS VAL THR SER SER GLY VAL SEQRES 18 A 378 LEU LEU LEU ASP ASN TYR THR ASP ARG ILE GLN VAL LEU SEQRES 19 A 378 ARG ASN MET VAL HIS CYS ALA ASP LEU SER ASN PRO THR SEQRES 20 A 378 LYS SER LEU GLU LEU TYR ARG GLN TRP THR ASP ARG ILE SEQRES 21 A 378 MET GLU GLU PHE PHE GLN GLN GLY ASP LYS GLU ARG GLU SEQRES 22 A 378 ARG GLY MET GLU ILE SER PRO MET CYS ASP LYS HIS THR SEQRES 23 A 378 ALA SER VAL GLU LYS SER GLN VAL GLY PHE ILE ASP TYR SEQRES 24 A 378 ILE VAL HIS PRO LEU TRP GLU THR TRP ALA ASP LEU VAL SEQRES 25 A 378 GLN PRO ASP ALA GLN ASP ILE LEU ASP THR LEU GLU ASP SEQRES 26 A 378 ASN ARG ASN TRP TYR GLN SER MET ILE PRO GLN ALA PRO SEQRES 27 A 378 ALA PRO PRO LEU ASP GLU GLN ASN ARG ASP CYS GLN GLY SEQRES 28 A 378 LEU MET GLU LYS PHE GLN PHE GLU LEU THR LEU ASP GLU SEQRES 29 A 378 GLU ASP SER GLU GLY PRO GLU LYS GLU GLY GLU GLY HIS SEQRES 30 A 378 SER SEQRES 1 B 378 MET SER ILE SER ARG PHE GLY VAL ASN THR GLU ASN GLU SEQRES 2 B 378 ASP HIS LEU ALA LYS GLU LEU GLU ASP LEU ASN LYS TRP SEQRES 3 B 378 GLY LEU ASN ILE PHE ASN VAL ALA GLY TYR SER HIS ASN SEQRES 4 B 378 ARG PRO LEU THR CYS ILE MET TYR ALA ILE PHE GLN GLU SEQRES 5 B 378 ARG ASP LEU LEU LYS THR PHE ARG ILE SER SER ASP THR SEQRES 6 B 378 PHE ILE THR TYR MET MET THR LEU GLU ASP HIS TYR HIS SEQRES 7 B 378 SER ASP VAL ALA TYR HIS ASN SER LEU HIS ALA ALA ASP SEQRES 8 B 378 VAL ALA GLN SER THR HIS VAL LEU LEU SER THR PRO ALA SEQRES 9 B 378 LEU ASP ALA VAL PHE THR ASP LEU GLU ILE LEU ALA ALA SEQRES 10 B 378 ILE PHE ALA ALA ALA ILE HIS ASP VAL ASP HIS PRO GLY SEQRES 11 B 378 VAL SER ASN GLN PHE LEU ILE ASN THR ASN SER GLU LEU SEQRES 12 B 378 ALA LEU MET TYR ASN ASP GLU SER VAL LEU GLU ASN HIS SEQRES 13 B 378 HIS LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU GLU HIS SEQRES 14 B 378 CYS ASP ILE PHE MET ASN LEU THR LYS LYS GLN ARG GLN SEQRES 15 B 378 THR LEU ARG LYS MET VAL ILE ASP MET VAL LEU ALA THR SEQRES 16 B 378 ASP MET SER LYS HIS MET SER LEU LEU ALA ASP LEU LYS SEQRES 17 B 378 THR MET VAL GLU THR LYS LYS VAL THR SER SER GLY VAL SEQRES 18 B 378 LEU LEU LEU ASP ASN TYR THR ASP ARG ILE GLN VAL LEU SEQRES 19 B 378 ARG ASN MET VAL HIS CYS ALA ASP LEU SER ASN PRO THR SEQRES 20 B 378 LYS SER LEU GLU LEU TYR ARG GLN TRP THR ASP ARG ILE SEQRES 21 B 378 MET GLU GLU PHE PHE GLN GLN GLY ASP LYS GLU ARG GLU SEQRES 22 B 378 ARG GLY MET GLU ILE SER PRO MET CYS ASP LYS HIS THR SEQRES 23 B 378 ALA SER VAL GLU LYS SER GLN VAL GLY PHE ILE ASP TYR SEQRES 24 B 378 ILE VAL HIS PRO LEU TRP GLU THR TRP ALA ASP LEU VAL SEQRES 25 B 378 GLN PRO ASP ALA GLN ASP ILE LEU ASP THR LEU GLU ASP SEQRES 26 B 378 ASN ARG ASN TRP TYR GLN SER MET ILE PRO GLN ALA PRO SEQRES 27 B 378 ALA PRO PRO LEU ASP GLU GLN ASN ARG ASP CYS GLN GLY SEQRES 28 B 378 LEU MET GLU LYS PHE GLN PHE GLU LEU THR LEU ASP GLU SEQRES 29 B 378 GLU ASP SER GLU GLY PRO GLU LYS GLU GLY GLU GLY HIS SEQRES 30 B 378 SER HET ZN A 529 1 HET MN A 530 1 HET ARS A 531 1 HET ROL A 601 82 HET ZN B 529 1 HET MN B 530 1 HET ROL B 602 82 HETNAM ZN ZINC ION HETNAM MN MANGANESE (II) ION HETNAM ARS ARSENIC HETNAM ROL ROLIPRAM HETSYN ROL (4R)-[3-(CYCLOPENTYLOXY)-4-METHOXYPHENYL]-2- HETSYN 2 ROL PYRROLIDINONE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MN 2(MN 2+) FORMUL 5 ARS AS FORMUL 6 ROL 2(C16 H21 N O3) FORMUL 10 HOH *315(H2 O) HELIX 1 1 SER A 152 GLY A 157 1 6 HELIX 2 2 ASN A 159 LEU A 170 1 12 HELIX 3 3 GLU A 171 LEU A 173 5 3 HELIX 4 4 ASN A 179 SER A 187 1 9 HELIX 5 5 ARG A 190 ARG A 203 1 14 HELIX 6 6 ASP A 204 PHE A 209 1 6 HELIX 7 7 SER A 212 HIS A 226 1 15 HELIX 8 8 ASN A 235 SER A 251 1 17 HELIX 9 9 THR A 252 ASP A 256 5 5 HELIX 10 10 THR A 260 HIS A 274 1 15 HELIX 11 11 SER A 282 THR A 289 1 8 HELIX 12 12 SER A 291 TYR A 297 1 7 HELIX 13 13 SER A 301 LEU A 314 1 14 HELIX 14 14 LEU A 315 GLU A 317 5 3 HELIX 15 15 THR A 327 ALA A 344 1 18 HELIX 16 16 THR A 345 SER A 348 5 4 HELIX 17 17 LYS A 349 GLU A 362 1 14 HELIX 18 18 ASN A 376 LEU A 393 1 18 HELIX 19 19 SER A 394 LYS A 398 5 5 HELIX 20 20 SER A 399 ARG A 424 1 26 HELIX 21 21 ASP A 433 ALA A 437 5 5 HELIX 22 22 SER A 438 ILE A 450 1 13 HELIX 23 23 ILE A 450 VAL A 462 1 13 HELIX 24 24 ALA A 466 ILE A 484 1 19 HELIX 25 25 SER B 152 PHE B 156 5 5 HELIX 26 26 ASN B 159 GLU B 171 1 13 HELIX 27 27 ASN B 179 TYR B 186 1 8 HELIX 28 28 ARG B 190 ARG B 203 1 14 HELIX 29 29 ASP B 204 PHE B 209 1 6 HELIX 30 30 SER B 212 HIS B 226 1 15 HELIX 31 31 ASN B 235 SER B 251 1 17 HELIX 32 32 THR B 252 ASP B 256 5 5 HELIX 33 33 THR B 260 HIS B 274 1 15 HELIX 34 34 SER B 282 THR B 289 1 8 HELIX 35 35 SER B 291 TYR B 297 1 7 HELIX 36 36 SER B 301 LEU B 314 1 14 HELIX 37 37 LEU B 315 GLU B 317 5 3 HELIX 38 38 THR B 327 ALA B 344 1 18 HELIX 39 39 THR B 345 SER B 348 5 4 HELIX 40 40 LYS B 349 THR B 363 1 15 HELIX 41 41 ASN B 376 LEU B 393 1 18 HELIX 42 42 SER B 394 LYS B 398 5 5 HELIX 43 43 SER B 399 ARG B 424 1 26 HELIX 44 44 SER B 438 ILE B 450 1 13 HELIX 45 45 ILE B 450 VAL B 462 1 13 HELIX 46 46 ALA B 466 SER B 482 1 17 LINK SG CYS A 194 AS ARS A 531 1555 1555 2.39 LINK NE2 HIS A 238 ZN ZN A 529 1555 1555 2.03 LINK NE2 HIS A 274 ZN ZN A 529 1555 1555 2.03 LINK OD2 ASP A 275 ZN ZN A 529 1555 1555 2.20 LINK OD1 ASP A 275 MN MN A 530 1555 1555 2.53 LINK OD1 ASP A 392 ZN ZN A 529 1555 1555 2.21 LINK ZN ZN A 529 O HOH A 788 1555 1555 1.90 LINK MN MN A 530 O HOH A 618 1555 1555 2.60 LINK MN MN A 530 O HOH A 650 1555 1555 2.47 LINK MN MN A 530 O HOH A 788 1555 1555 2.62 LINK NE2 HIS B 238 ZN ZN B 529 1555 1555 1.94 LINK NE2 HIS B 274 ZN ZN B 529 1555 1555 2.12 LINK OD2 ASP B 275 ZN ZN B 529 1555 1555 2.14 LINK OD1 ASP B 392 ZN ZN B 529 1555 1555 2.14 LINK ZN ZN B 529 O HOH B 715 1555 1555 1.79 LINK MN MN B 530 O HOH B 695 1555 1555 2.63 LINK MN MN B 530 O HOH B 706 1555 1555 2.55 CISPEP 1 GLN A 463 PRO A 464 0 0.02 CISPEP 2 GLN B 463 PRO B 464 0 -1.08 SITE 1 AC1 6 HIS A 238 HIS A 274 ASP A 275 ASP A 392 SITE 2 AC1 6 ROL A 601 HOH A 788 SITE 1 AC2 6 HIS B 238 HIS B 274 ASP B 275 ASP B 392 SITE 2 AC2 6 ROL B 602 HOH B 715 SITE 1 AC3 6 ASP A 275 ROL A 601 HOH A 615 HOH A 618 SITE 2 AC3 6 HOH A 650 HOH A 788 SITE 1 AC4 7 HIS B 274 ASP B 275 HIS B 307 THR B 345 SITE 2 AC4 7 HOH B 620 HOH B 695 HOH B 706 SITE 1 AC5 1 CYS A 194 SITE 1 AC6 16 TYR A 233 HIS A 234 MET A 347 ASP A 392 SITE 2 AC6 16 LEU A 393 ASN A 395 THR A 407 ILE A 410 SITE 3 AC6 16 PHE A 414 SER A 442 GLN A 443 PHE A 446 SITE 4 AC6 16 ZN A 529 MN A 530 HOH A 778 HOH A 788 SITE 1 AC7 16 TYR B 233 HIS B 234 MET B 347 ASP B 392 SITE 2 AC7 16 LEU B 393 ASN B 395 THR B 407 ILE B 410 SITE 3 AC7 16 MET B 411 PHE B 414 SER B 442 GLN B 443 SITE 4 AC7 16 PHE B 446 ZN B 529 HOH B 715 HOH B 716 CRYST1 103.148 160.891 108.780 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009695 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009193 0.00000