data_1RPT # _entry.id 1RPT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1RPT WWPDB D_1000176183 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RPT _pdbx_database_status.recvd_initial_deposition_date 1993-11-29 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lindqvist, Y.' 1 'Schneider, G.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Crystal structures of rat acid phosphatase complexed with the transition-state analogs vanadate and molybdate. Implications for the reaction mechanism. ; Eur.J.Biochem. 221 139 142 1994 EJBCAI IX 0014-2956 0262 ? 8168503 10.1111/j.1432-1033.1994.tb18722.x 1 'Three-Dimensional Structure of Rat Acid Phosphatase' 'Embo J.' 12 2609 ? 1993 EMJODG UK 0261-4189 0897 ? ? ? 2 ;Rat Acid Phosphatase: Overexpression of Active, Secreted Enzyme by Recombinant Baculovirus-Infected Insect Cells, Molecular Properties, and Crystallization ; Proc.Natl.Acad.Sci.USA 90 799 ? 1993 PNASA6 US 0027-8424 0040 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lindqvist, Y.' 1 ? primary 'Schneider, G.' 2 ? primary 'Vihko, P.' 3 ? 1 'Schneider, G.' 4 ? 1 'Lindqvist, Y.' 5 ? 1 'Vihko, P.' 6 ? 2 'Vihko, P.' 7 ? 2 'Kurkela, R.' 8 ? 2 'Porvari, K.' 9 ? 2 'Herrala, A.' 10 ? 2 'Lindfors, A.' 11 ? 2 'Lindqvist, Y.' 12 ? 2 'Schneider, G.' 13 ? # _cell.entry_id 1RPT _cell.length_a 89.400 _cell.length_b 89.400 _cell.length_c 152.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RPT _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROSTATIC ACID PHOSPHATASE' 39691.215 1 3.1.3.2 ? ? ? 2 branched man 'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 non-polymer syn 'VANADATE ION' 114.939 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KELKFVTLVFRHGDRGPIETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRYGRFLNNSYKHDQVYIRSTDVDRT LMSAMTNLAALFPPEGNSIWNPRLLWQPIPVHTVSLSEDRLLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLP SLSGFEDQDLFEIWSRLYDPLYCESVHNFTLPTWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMK LATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMYYRNETQNEPYPLTLPGCTHSCP LEKFAELLDPVIPQDWATECMG ; _entity_poly.pdbx_seq_one_letter_code_can ;KELKFVTLVFRHGDRGPIETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRYGRFLNNSYKHDQVYIRSTDVDRT LMSAMTNLAALFPPEGNSIWNPRLLWQPIPVHTVSLSEDRLLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLP SLSGFEDQDLFEIWSRLYDPLYCESVHNFTLPTWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMK LATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMYYRNETQNEPYPLTLPGCTHSCP LEKFAELLDPVIPQDWATECMG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 GLU n 1 3 LEU n 1 4 LYS n 1 5 PHE n 1 6 VAL n 1 7 THR n 1 8 LEU n 1 9 VAL n 1 10 PHE n 1 11 ARG n 1 12 HIS n 1 13 GLY n 1 14 ASP n 1 15 ARG n 1 16 GLY n 1 17 PRO n 1 18 ILE n 1 19 GLU n 1 20 THR n 1 21 PHE n 1 22 PRO n 1 23 ASN n 1 24 ASP n 1 25 PRO n 1 26 ILE n 1 27 LYS n 1 28 GLU n 1 29 SER n 1 30 SER n 1 31 TRP n 1 32 PRO n 1 33 GLN n 1 34 GLY n 1 35 PHE n 1 36 GLY n 1 37 GLN n 1 38 LEU n 1 39 THR n 1 40 LYS n 1 41 TRP n 1 42 GLY n 1 43 MET n 1 44 GLY n 1 45 GLN n 1 46 HIS n 1 47 TYR n 1 48 GLU n 1 49 LEU n 1 50 GLY n 1 51 SER n 1 52 TYR n 1 53 ILE n 1 54 ARG n 1 55 ARG n 1 56 ARG n 1 57 TYR n 1 58 GLY n 1 59 ARG n 1 60 PHE n 1 61 LEU n 1 62 ASN n 1 63 ASN n 1 64 SER n 1 65 TYR n 1 66 LYS n 1 67 HIS n 1 68 ASP n 1 69 GLN n 1 70 VAL n 1 71 TYR n 1 72 ILE n 1 73 ARG n 1 74 SER n 1 75 THR n 1 76 ASP n 1 77 VAL n 1 78 ASP n 1 79 ARG n 1 80 THR n 1 81 LEU n 1 82 MET n 1 83 SER n 1 84 ALA n 1 85 MET n 1 86 THR n 1 87 ASN n 1 88 LEU n 1 89 ALA n 1 90 ALA n 1 91 LEU n 1 92 PHE n 1 93 PRO n 1 94 PRO n 1 95 GLU n 1 96 GLY n 1 97 ASN n 1 98 SER n 1 99 ILE n 1 100 TRP n 1 101 ASN n 1 102 PRO n 1 103 ARG n 1 104 LEU n 1 105 LEU n 1 106 TRP n 1 107 GLN n 1 108 PRO n 1 109 ILE n 1 110 PRO n 1 111 VAL n 1 112 HIS n 1 113 THR n 1 114 VAL n 1 115 SER n 1 116 LEU n 1 117 SER n 1 118 GLU n 1 119 ASP n 1 120 ARG n 1 121 LEU n 1 122 LEU n 1 123 TYR n 1 124 LEU n 1 125 PRO n 1 126 PHE n 1 127 ARG n 1 128 ASP n 1 129 CYS n 1 130 PRO n 1 131 ARG n 1 132 PHE n 1 133 GLN n 1 134 GLU n 1 135 LEU n 1 136 LYS n 1 137 SER n 1 138 GLU n 1 139 THR n 1 140 LEU n 1 141 LYS n 1 142 SER n 1 143 GLU n 1 144 GLU n 1 145 PHE n 1 146 LEU n 1 147 LYS n 1 148 ARG n 1 149 LEU n 1 150 GLN n 1 151 PRO n 1 152 TYR n 1 153 LYS n 1 154 SER n 1 155 PHE n 1 156 ILE n 1 157 ASP n 1 158 THR n 1 159 LEU n 1 160 PRO n 1 161 SER n 1 162 LEU n 1 163 SER n 1 164 GLY n 1 165 PHE n 1 166 GLU n 1 167 ASP n 1 168 GLN n 1 169 ASP n 1 170 LEU n 1 171 PHE n 1 172 GLU n 1 173 ILE n 1 174 TRP n 1 175 SER n 1 176 ARG n 1 177 LEU n 1 178 TYR n 1 179 ASP n 1 180 PRO n 1 181 LEU n 1 182 TYR n 1 183 CYS n 1 184 GLU n 1 185 SER n 1 186 VAL n 1 187 HIS n 1 188 ASN n 1 189 PHE n 1 190 THR n 1 191 LEU n 1 192 PRO n 1 193 THR n 1 194 TRP n 1 195 ALA n 1 196 THR n 1 197 GLU n 1 198 ASP n 1 199 ALA n 1 200 MET n 1 201 THR n 1 202 LYS n 1 203 LEU n 1 204 LYS n 1 205 GLU n 1 206 LEU n 1 207 SER n 1 208 GLU n 1 209 LEU n 1 210 SER n 1 211 LEU n 1 212 LEU n 1 213 SER n 1 214 LEU n 1 215 TYR n 1 216 GLY n 1 217 ILE n 1 218 HIS n 1 219 LYS n 1 220 GLN n 1 221 LYS n 1 222 GLU n 1 223 LYS n 1 224 SER n 1 225 ARG n 1 226 LEU n 1 227 GLN n 1 228 GLY n 1 229 GLY n 1 230 VAL n 1 231 LEU n 1 232 VAL n 1 233 ASN n 1 234 GLU n 1 235 ILE n 1 236 LEU n 1 237 LYS n 1 238 ASN n 1 239 MET n 1 240 LYS n 1 241 LEU n 1 242 ALA n 1 243 THR n 1 244 GLN n 1 245 PRO n 1 246 GLN n 1 247 LYS n 1 248 ALA n 1 249 ARG n 1 250 LYS n 1 251 LEU n 1 252 ILE n 1 253 MET n 1 254 TYR n 1 255 SER n 1 256 ALA n 1 257 HIS n 1 258 ASP n 1 259 THR n 1 260 THR n 1 261 VAL n 1 262 SER n 1 263 GLY n 1 264 LEU n 1 265 GLN n 1 266 MET n 1 267 ALA n 1 268 LEU n 1 269 ASP n 1 270 VAL n 1 271 TYR n 1 272 ASN n 1 273 GLY n 1 274 LEU n 1 275 LEU n 1 276 PRO n 1 277 PRO n 1 278 TYR n 1 279 ALA n 1 280 SER n 1 281 CYS n 1 282 HIS n 1 283 ILE n 1 284 MET n 1 285 GLU n 1 286 LEU n 1 287 TYR n 1 288 GLN n 1 289 ASP n 1 290 ASN n 1 291 GLY n 1 292 GLY n 1 293 HIS n 1 294 PHE n 1 295 VAL n 1 296 GLU n 1 297 MET n 1 298 TYR n 1 299 TYR n 1 300 ARG n 1 301 ASN n 1 302 GLU n 1 303 THR n 1 304 GLN n 1 305 ASN n 1 306 GLU n 1 307 PRO n 1 308 TYR n 1 309 PRO n 1 310 LEU n 1 311 THR n 1 312 LEU n 1 313 PRO n 1 314 GLY n 1 315 CYS n 1 316 THR n 1 317 HIS n 1 318 SER n 1 319 CYS n 1 320 PRO n 1 321 LEU n 1 322 GLU n 1 323 LYS n 1 324 PHE n 1 325 ALA n 1 326 GLU n 1 327 LEU n 1 328 LEU n 1 329 ASP n 1 330 PRO n 1 331 VAL n 1 332 ILE n 1 333 PRO n 1 334 GLN n 1 335 ASP n 1 336 TRP n 1 337 ALA n 1 338 THR n 1 339 GLU n 1 340 CYS n 1 341 MET n 1 342 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Norway rat' _entity_src_gen.gene_src_genus Rattus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PPAP_RAT _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P20646 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MRAVPLHLVGTASLTLGFLLLLSLRLDPGQAKELKFVTLVFRHGDRGPIETFPNDPIKESSWPQGFGQLTKWGMGQHYEL GSYIRRRYGRFLNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGISIWNPRLLWQPIPVHTVSLSEDRLLYLPFRDC PRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDPLYCESVHNFTFRTWATEDAMTKLKELSEL SLLSLYGIHKQKEKSRLQGGVLVNEILKNMKLATQPQKARKLIMYSAYDTTVSGLQMALELYNGLLPPYASCHIMELYQD NGGTFVEMYYRNETQNEPYPLTLPGCTHSCPLEKFAELLDPVIPQDWATECMGTSNHQASL ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1RPT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 342 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P20646 _struct_ref_seq.db_align_beg 32 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 373 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 342 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1RPT ASN A 97 ? UNP P20646 ILE 128 conflict 97 1 1 1RPT LEU A 191 ? UNP P20646 PHE 222 conflict 191 2 1 1RPT PRO A 192 ? UNP P20646 ARG 223 conflict 192 3 1 1RPT HIS A 257 ? UNP P20646 TYR 288 conflict 257 4 1 1RPT ASP A 269 ? UNP P20646 GLU 300 conflict 269 5 1 1RPT VAL A 270 ? UNP P20646 LEU 301 conflict 270 6 1 1RPT HIS A 293 ? UNP P20646 THR 324 conflict 293 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose ? 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 VO4 non-polymer . 'VANADATE ION' ? 'O4 V -3' 114.939 # _exptl.entry_id 1RPT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.42 _exptl_crystal.density_percent_sol 72.14 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1RPT _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 3.0 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.215 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.215 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2794 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2852 _refine_hist.d_res_high 3.0 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.023 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 4.2 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1RPT _struct.title ;CRYSTAL STRUCTURES OF RAT ACID PHOSPHATASE COMPLEXED WITH THE TRANSITIONS STATE ANALOGS VANADATE AND MOLYBDATE: IMPLICATIONS FOR THE REACTION MECHANISM ; _struct.pdbx_descriptor 'PROSTATIC ACID PHOSPHATASE (E.C.3.1.3.2) COMPLEXED WITH VANADATE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RPT _struct_keywords.pdbx_keywords 'HYDROLASE(PHOSPHORIC MONOESTER)' _struct_keywords.text 'HYDROLASE(PHOSPHORIC MONOESTER)' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 H1 LYS A 40 ? LEU A 61 ? LYS A 40 LEU A 61 1 ? 22 HELX_P HELX_P2 H2 ASP A 78 ? LEU A 91 ? ASP A 78 LEU A 91 1 ? 14 HELX_P HELX_P3 H3 PRO A 130 ? LYS A 141 ? PRO A 130 LYS A 141 1 ? 12 HELX_P HELX_P4 H4 GLU A 143 ? LEU A 149 ? GLU A 143 LEU A 149 1 ? 7 HELX_P HELX_P5 H5 LYS A 153 ? SER A 163 ? LYS A 153 SER A 163 1 'EXTRA RESIDUE AT POS 159' 11 HELX_P HELX_P6 H6A LEU A 170 ? ARG A 176 ? LEU A 170 ARG A 176 1 ? 7 HELX_P HELX_P7 H6B TYR A 178 ? SER A 185 ? TYR A 178 SER A 185 1 ? 8 HELX_P HELX_P8 H7 GLU A 197 ? TYR A 215 ? GLU A 197 TYR A 215 1 ? 19 HELX_P HELX_P9 H8 GLN A 220 ? ARG A 225 ? GLN A 220 ARG A 225 1 ? 6 HELX_P HELX_P10 H9 GLY A 228 ? LEU A 241 ? GLY A 228 LEU A 241 1 ? 14 HELX_P HELX_P11 H10 ASP A 258 ? LEU A 268 ? ASP A 258 LEU A 268 1 ? 11 HELX_P HELX_P12 H11 LEU A 321 ? LEU A 328 ? LEU A 321 LEU A 328 1 ? 8 HELX_P HELX_P13 H12 TRP A 336 ? GLU A 339 ? TRP A 336 GLU A 339 1 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 129 SG ? ? ? 1_555 A CYS 340 SG ? ? A CYS 129 A CYS 340 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf2 disulf ? ? A CYS 315 SG ? ? ? 1_555 A CYS 319 SG ? ? A CYS 315 A CYS 319 1_555 ? ? ? ? ? ? ? 2.051 ? ? covale1 covale one ? A ASN 62 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 62 A NAG 347 1_555 ? ? ? ? ? ? ? 1.502 ? N-Glycosylation covale2 covale one ? A ASN 301 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 301 B NAG 1 1_555 ? ? ? ? ? ? ? 1.469 ? N-Glycosylation covale3 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.457 ? ? covale4 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.471 ? ? metalc1 metalc ? ? A HIS 12 NE2 ? ? ? 1_555 D VO4 . V ? ? A HIS 12 A VO4 343 1_555 ? ? ? ? ? ? ? 1.966 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 124 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 124 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 125 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 125 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -15.61 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details S1A ? 7 ? S1B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense S1A 1 2 ? parallel S1A 2 3 ? parallel S1A 3 4 ? parallel S1A 4 5 ? anti-parallel S1A 5 6 ? anti-parallel S1A 6 7 ? anti-parallel S1B 1 2 ? parallel S1B 2 3 ? parallel S1B 3 4 ? parallel S1B 4 5 ? anti-parallel S1B 5 6 ? anti-parallel S1B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id S1A 1 HIS A 112 ? VAL A 114 ? HIS A 112 VAL A 114 S1A 2 VAL A 70 ? SER A 74 ? VAL A 70 SER A 74 S1A 3 LEU A 251 ? ALA A 256 ? LEU A 251 ALA A 256 S1A 4 LEU A 3 ? ARG A 11 ? LEU A 3 ARG A 11 S1A 5 CYS A 281 ? ASP A 289 ? CYS A 281 ASP A 289 S1A 6 GLY A 292 ? ARG A 300 ? GLY A 292 ARG A 300 S1A 7 TYR A 308 ? LEU A 310 ? TYR A 308 LEU A 310 S1B 1 HIS A 112 ? VAL A 114 ? HIS A 112 VAL A 114 S1B 2 VAL A 70 ? SER A 74 ? VAL A 70 SER A 74 S1B 3 LEU A 251 ? ALA A 256 ? LEU A 251 ALA A 256 S1B 4 LEU A 3 ? ARG A 11 ? LEU A 3 ARG A 11 S1B 5 CYS A 281 ? ASP A 289 ? CYS A 281 ASP A 289 S1B 6 GLY A 292 ? ARG A 300 ? GLY A 292 ARG A 300 S1B 7 CYS A 319 ? LEU A 321 ? CYS A 319 LEU A 321 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id S1A 1 2 O HIS A 112 ? O HIS A 112 N SER A 74 ? N SER A 74 S1A 2 3 N ARG A 73 ? N ARG A 73 O MET A 253 ? O MET A 253 S1A 3 4 O TYR A 254 ? O TYR A 254 N PHE A 10 ? N PHE A 10 S1A 4 5 N VAL A 9 ? N VAL A 9 O HIS A 282 ? O HIS A 282 S1A 5 6 O CYS A 281 ? O CYS A 281 N ARG A 300 ? N ARG A 300 S1A 6 7 N TYR A 299 ? N TYR A 299 O TYR A 308 ? O TYR A 308 S1B 1 2 O HIS A 112 ? O HIS A 112 N SER A 74 ? N SER A 74 S1B 2 3 N ARG A 73 ? N ARG A 73 O MET A 253 ? O MET A 253 S1B 3 4 O TYR A 254 ? O TYR A 254 N PHE A 10 ? N PHE A 10 S1B 4 5 N VAL A 9 ? N VAL A 9 O HIS A 282 ? O HIS A 282 S1B 5 6 O CYS A 281 ? O CYS A 281 N ARG A 300 ? N ARG A 300 S1B 6 7 N VAL A 295 ? N VAL A 295 O CYS A 319 ? O CYS A 319 # _database_PDB_matrix.entry_id 1RPT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1RPT _atom_sites.fract_transf_matrix[1][1] 0.011186 _atom_sites.fract_transf_matrix[1][2] 0.006458 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012916 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006579 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'CIS PROLINE - PRO 125' # loop_ _atom_type.symbol C N O S V # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 TRP 31 31 31 TRP TRP A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 TRP 41 41 41 TRP TRP A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 MET 43 43 43 MET MET A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 HIS 46 46 46 HIS HIS A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 TYR 57 57 57 TYR TYR A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 HIS 67 67 67 HIS HIS A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 TYR 71 71 71 TYR TYR A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 MET 85 85 85 MET MET A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 TRP 100 100 100 TRP TRP A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 TRP 106 106 106 TRP TRP A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 HIS 112 112 112 HIS HIS A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 TYR 123 123 123 TYR TYR A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 PHE 126 126 126 PHE PHE A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 CYS 129 129 129 CYS CYS A . n A 1 130 PRO 130 130 130 PRO PRO A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 GLN 133 133 133 GLN GLN A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 GLU 144 144 144 GLU GLU A . n A 1 145 PHE 145 145 145 PHE PHE A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 GLN 150 150 150 GLN GLN A . n A 1 151 PRO 151 151 151 PRO PRO A . n A 1 152 TYR 152 152 152 TYR TYR A . n A 1 153 LYS 153 153 153 LYS LYS A . n A 1 154 SER 154 154 154 SER SER A . n A 1 155 PHE 155 155 155 PHE PHE A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 THR 158 158 158 THR THR A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 PRO 160 160 160 PRO PRO A . n A 1 161 SER 161 161 161 SER SER A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 SER 163 163 163 SER SER A . n A 1 164 GLY 164 164 164 GLY GLY A . n A 1 165 PHE 165 165 165 PHE PHE A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 GLN 168 168 168 GLN GLN A . n A 1 169 ASP 169 169 169 ASP ASP A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 PHE 171 171 171 PHE PHE A . n A 1 172 GLU 172 172 172 GLU GLU A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 TRP 174 174 174 TRP TRP A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 ARG 176 176 176 ARG ARG A . n A 1 177 LEU 177 177 177 LEU LEU A . n A 1 178 TYR 178 178 178 TYR TYR A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 PRO 180 180 180 PRO PRO A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 TYR 182 182 182 TYR TYR A . n A 1 183 CYS 183 183 183 CYS CYS A . n A 1 184 GLU 184 184 184 GLU GLU A . n A 1 185 SER 185 185 185 SER SER A . n A 1 186 VAL 186 186 186 VAL VAL A . n A 1 187 HIS 187 187 187 HIS HIS A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 PHE 189 189 189 PHE PHE A . n A 1 190 THR 190 190 190 THR THR A . n A 1 191 LEU 191 191 191 LEU LEU A . n A 1 192 PRO 192 192 192 PRO PRO A . n A 1 193 THR 193 193 193 THR THR A . n A 1 194 TRP 194 194 194 TRP TRP A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 THR 196 196 196 THR THR A . n A 1 197 GLU 197 197 197 GLU GLU A . n A 1 198 ASP 198 198 198 ASP ASP A . n A 1 199 ALA 199 199 199 ALA ALA A . n A 1 200 MET 200 200 200 MET MET A . n A 1 201 THR 201 201 201 THR THR A . n A 1 202 LYS 202 202 202 LYS LYS A . n A 1 203 LEU 203 203 203 LEU LEU A . n A 1 204 LYS 204 204 204 LYS LYS A . n A 1 205 GLU 205 205 205 GLU GLU A . n A 1 206 LEU 206 206 206 LEU LEU A . n A 1 207 SER 207 207 207 SER SER A . n A 1 208 GLU 208 208 208 GLU GLU A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 SER 210 210 210 SER SER A . n A 1 211 LEU 211 211 211 LEU LEU A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 SER 213 213 213 SER SER A . n A 1 214 LEU 214 214 214 LEU LEU A . n A 1 215 TYR 215 215 215 TYR TYR A . n A 1 216 GLY 216 216 216 GLY GLY A . n A 1 217 ILE 217 217 217 ILE ILE A . n A 1 218 HIS 218 218 218 HIS HIS A . n A 1 219 LYS 219 219 219 LYS LYS A . n A 1 220 GLN 220 220 220 GLN GLN A . n A 1 221 LYS 221 221 221 LYS LYS A . n A 1 222 GLU 222 222 222 GLU GLU A . n A 1 223 LYS 223 223 223 LYS LYS A . n A 1 224 SER 224 224 224 SER SER A . n A 1 225 ARG 225 225 225 ARG ARG A . n A 1 226 LEU 226 226 226 LEU LEU A . n A 1 227 GLN 227 227 227 GLN GLN A . n A 1 228 GLY 228 228 228 GLY GLY A . n A 1 229 GLY 229 229 229 GLY GLY A . n A 1 230 VAL 230 230 230 VAL VAL A . n A 1 231 LEU 231 231 231 LEU LEU A . n A 1 232 VAL 232 232 232 VAL VAL A . n A 1 233 ASN 233 233 233 ASN ASN A . n A 1 234 GLU 234 234 234 GLU GLU A . n A 1 235 ILE 235 235 235 ILE ILE A . n A 1 236 LEU 236 236 236 LEU LEU A . n A 1 237 LYS 237 237 237 LYS LYS A . n A 1 238 ASN 238 238 238 ASN ASN A . n A 1 239 MET 239 239 239 MET MET A . n A 1 240 LYS 240 240 240 LYS LYS A . n A 1 241 LEU 241 241 241 LEU LEU A . n A 1 242 ALA 242 242 242 ALA ALA A . n A 1 243 THR 243 243 243 THR THR A . n A 1 244 GLN 244 244 244 GLN GLN A . n A 1 245 PRO 245 245 245 PRO PRO A . n A 1 246 GLN 246 246 246 GLN GLN A . n A 1 247 LYS 247 247 247 LYS LYS A . n A 1 248 ALA 248 248 248 ALA ALA A . n A 1 249 ARG 249 249 249 ARG ARG A . n A 1 250 LYS 250 250 250 LYS LYS A . n A 1 251 LEU 251 251 251 LEU LEU A . n A 1 252 ILE 252 252 252 ILE ILE A . n A 1 253 MET 253 253 253 MET MET A . n A 1 254 TYR 254 254 254 TYR TYR A . n A 1 255 SER 255 255 255 SER SER A . n A 1 256 ALA 256 256 256 ALA ALA A . n A 1 257 HIS 257 257 257 HIS HIS A . n A 1 258 ASP 258 258 258 ASP ASP A . n A 1 259 THR 259 259 259 THR THR A . n A 1 260 THR 260 260 260 THR THR A . n A 1 261 VAL 261 261 261 VAL VAL A . n A 1 262 SER 262 262 262 SER SER A . n A 1 263 GLY 263 263 263 GLY GLY A . n A 1 264 LEU 264 264 264 LEU LEU A . n A 1 265 GLN 265 265 265 GLN GLN A . n A 1 266 MET 266 266 266 MET MET A . n A 1 267 ALA 267 267 267 ALA ALA A . n A 1 268 LEU 268 268 268 LEU LEU A . n A 1 269 ASP 269 269 269 ASP ASP A . n A 1 270 VAL 270 270 270 VAL VAL A . n A 1 271 TYR 271 271 271 TYR TYR A . n A 1 272 ASN 272 272 272 ASN ASN A . n A 1 273 GLY 273 273 273 GLY GLY A . n A 1 274 LEU 274 274 274 LEU LEU A . n A 1 275 LEU 275 275 275 LEU LEU A . n A 1 276 PRO 276 276 276 PRO PRO A . n A 1 277 PRO 277 277 277 PRO PRO A . n A 1 278 TYR 278 278 278 TYR TYR A . n A 1 279 ALA 279 279 279 ALA ALA A . n A 1 280 SER 280 280 280 SER SER A . n A 1 281 CYS 281 281 281 CYS CYS A . n A 1 282 HIS 282 282 282 HIS HIS A . n A 1 283 ILE 283 283 283 ILE ILE A . n A 1 284 MET 284 284 284 MET MET A . n A 1 285 GLU 285 285 285 GLU GLU A . n A 1 286 LEU 286 286 286 LEU LEU A . n A 1 287 TYR 287 287 287 TYR TYR A . n A 1 288 GLN 288 288 288 GLN GLN A . n A 1 289 ASP 289 289 289 ASP ASP A . n A 1 290 ASN 290 290 290 ASN ASN A . n A 1 291 GLY 291 291 291 GLY GLY A . n A 1 292 GLY 292 292 292 GLY GLY A . n A 1 293 HIS 293 293 293 HIS HIS A . n A 1 294 PHE 294 294 294 PHE PHE A . n A 1 295 VAL 295 295 295 VAL VAL A . n A 1 296 GLU 296 296 296 GLU GLU A . n A 1 297 MET 297 297 297 MET MET A . n A 1 298 TYR 298 298 298 TYR TYR A . n A 1 299 TYR 299 299 299 TYR TYR A . n A 1 300 ARG 300 300 300 ARG ARG A . n A 1 301 ASN 301 301 301 ASN ASN A . n A 1 302 GLU 302 302 302 GLU GLU A . n A 1 303 THR 303 303 303 THR THR A . n A 1 304 GLN 304 304 304 GLN GLN A . n A 1 305 ASN 305 305 305 ASN ASN A . n A 1 306 GLU 306 306 306 GLU GLU A . n A 1 307 PRO 307 307 307 PRO PRO A . n A 1 308 TYR 308 308 308 TYR TYR A . n A 1 309 PRO 309 309 309 PRO PRO A . n A 1 310 LEU 310 310 310 LEU LEU A . n A 1 311 THR 311 311 311 THR THR A . n A 1 312 LEU 312 312 312 LEU LEU A . n A 1 313 PRO 313 313 313 PRO PRO A . n A 1 314 GLY 314 314 314 GLY GLY A . n A 1 315 CYS 315 315 315 CYS CYS A . n A 1 316 THR 316 316 316 THR THR A . n A 1 317 HIS 317 317 317 HIS HIS A . n A 1 318 SER 318 318 318 SER SER A . n A 1 319 CYS 319 319 319 CYS CYS A . n A 1 320 PRO 320 320 320 PRO PRO A . n A 1 321 LEU 321 321 321 LEU LEU A . n A 1 322 GLU 322 322 322 GLU GLU A . n A 1 323 LYS 323 323 323 LYS LYS A . n A 1 324 PHE 324 324 324 PHE PHE A . n A 1 325 ALA 325 325 325 ALA ALA A . n A 1 326 GLU 326 326 326 GLU GLU A . n A 1 327 LEU 327 327 327 LEU LEU A . n A 1 328 LEU 328 328 328 LEU LEU A . n A 1 329 ASP 329 329 329 ASP ASP A . n A 1 330 PRO 330 330 330 PRO PRO A . n A 1 331 VAL 331 331 331 VAL VAL A . n A 1 332 ILE 332 332 332 ILE ILE A . n A 1 333 PRO 333 333 333 PRO PRO A . n A 1 334 GLN 334 334 334 GLN GLN A . n A 1 335 ASP 335 335 335 ASP ASP A . n A 1 336 TRP 336 336 336 TRP TRP A . n A 1 337 ALA 337 337 337 ALA ALA A . n A 1 338 THR 338 338 338 THR THR A . n A 1 339 GLU 339 339 339 GLU GLU A . n A 1 340 CYS 340 340 340 CYS CYS A . n A 1 341 MET 341 341 341 MET MET A . n A 1 342 GLY 342 342 342 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 347 347 NAG NAG A . D 4 VO4 1 343 343 VO4 VO4 A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 62 A ASN 62 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 301 A ASN 301 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 50.6666666667 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 12 ? A HIS 12 ? 1_555 V ? D VO4 . ? A VO4 343 ? 1_555 O1 ? D VO4 . ? A VO4 343 ? 1_555 91.4 ? 2 NE2 ? A HIS 12 ? A HIS 12 ? 1_555 V ? D VO4 . ? A VO4 343 ? 1_555 O2 ? D VO4 . ? A VO4 343 ? 1_555 88.4 ? 3 O1 ? D VO4 . ? A VO4 343 ? 1_555 V ? D VO4 . ? A VO4 343 ? 1_555 O2 ? D VO4 . ? A VO4 343 ? 1_555 118.1 ? 4 NE2 ? A HIS 12 ? A HIS 12 ? 1_555 V ? D VO4 . ? A VO4 343 ? 1_555 O3 ? D VO4 . ? A VO4 343 ? 1_555 177.5 ? 5 O1 ? D VO4 . ? A VO4 343 ? 1_555 V ? D VO4 . ? A VO4 343 ? 1_555 O3 ? D VO4 . ? A VO4 343 ? 1_555 86.5 ? 6 O2 ? D VO4 . ? A VO4 343 ? 1_555 V ? D VO4 . ? A VO4 343 ? 1_555 O3 ? D VO4 . ? A VO4 343 ? 1_555 91.3 ? 7 NE2 ? A HIS 12 ? A HIS 12 ? 1_555 V ? D VO4 . ? A VO4 343 ? 1_555 O4 ? D VO4 . ? A VO4 343 ? 1_555 96.6 ? 8 O1 ? D VO4 . ? A VO4 343 ? 1_555 V ? D VO4 . ? A VO4 343 ? 1_555 O4 ? D VO4 . ? A VO4 343 ? 1_555 123.1 ? 9 O2 ? D VO4 . ? A VO4 343 ? 1_555 V ? D VO4 . ? A VO4 343 ? 1_555 O4 ? D VO4 . ? A VO4 343 ? 1_555 118.3 ? 10 O3 ? D VO4 . ? A VO4 343 ? 1_555 V ? D VO4 . ? A VO4 343 ? 1_555 O4 ? D VO4 . ? A VO4 343 ? 1_555 85.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-05-31 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' Other 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_database_status 7 4 'Structure model' pdbx_entity_branch 8 4 'Structure model' pdbx_entity_branch_descriptor 9 4 'Structure model' pdbx_entity_branch_link 10 4 'Structure model' pdbx_entity_branch_list 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_nonpoly_scheme 13 4 'Structure model' pdbx_struct_assembly_gen 14 4 'Structure model' pdbx_struct_conn_angle 15 4 'Structure model' struct_asym 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_ref_seq_dif 18 4 'Structure model' struct_site 19 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_asym_id' 2 4 'Structure model' '_atom_site.auth_seq_id' 3 4 'Structure model' '_atom_site.label_asym_id' 4 4 'Structure model' '_atom_site.label_entity_id' 5 4 'Structure model' '_chem_comp.name' 6 4 'Structure model' '_chem_comp.type' 7 4 'Structure model' '_entity.formula_weight' 8 4 'Structure model' '_entity.pdbx_description' 9 4 'Structure model' '_entity.pdbx_number_of_molecules' 10 4 'Structure model' '_entity.type' 11 4 'Structure model' '_pdbx_database_status.process_site' 12 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 17 4 'Structure model' '_struct_conn.pdbx_role' 18 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # _pdbx_entry_details.entry_id 1RPT _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;SEQUENCE ADVISORY NOTICE DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. SWISS-PROT ENTRY NAME: PPAP_RAT SWISS-PROT RESIDUE PDB SEQRES NAME NUMBER NAME CHAIN SEQ/INSERT CODE ILE 128 ASN 97 PHE 222 LEU 191 ARG 223 PRO 192 THE DEPOSITORS BELIEVE THAT THE SEQUENCE PRESENTED IN THIS ENTRY IS CORRECT AND THAT THE SWISS-PROT SEQUENCE IS INCORRECT. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 NE2 A HIS 12 ? ? CD2 A HIS 12 ? ? 1.294 1.373 -0.079 0.011 N 2 1 NE2 A HIS 257 ? ? CD2 A HIS 257 ? ? 1.279 1.373 -0.094 0.011 N 3 1 NE2 A HIS 282 ? ? CD2 A HIS 282 ? ? 1.303 1.373 -0.070 0.011 N 4 1 NE2 A HIS 293 ? ? CD2 A HIS 293 ? ? 1.284 1.373 -0.089 0.011 N 5 1 NE2 A HIS 317 ? ? CD2 A HIS 317 ? ? 1.295 1.373 -0.078 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A VAL 6 ? ? CB A VAL 6 ? ? CG2 A VAL 6 ? ? 100.54 110.90 -10.36 1.50 N 2 1 NE A ARG 11 ? ? CZ A ARG 11 ? ? NH1 A ARG 11 ? ? 123.42 120.30 3.12 0.50 N 3 1 CD1 A TRP 31 ? ? CG A TRP 31 ? ? CD2 A TRP 31 ? ? 115.81 106.30 9.51 0.80 N 4 1 CG A TRP 31 ? ? CD1 A TRP 31 ? ? NE1 A TRP 31 ? ? 102.73 110.10 -7.37 1.00 N 5 1 CE2 A TRP 31 ? ? CD2 A TRP 31 ? ? CG A TRP 31 ? ? 100.33 107.30 -6.97 0.80 N 6 1 CD1 A TRP 41 ? ? CG A TRP 41 ? ? CD2 A TRP 41 ? ? 113.89 106.30 7.59 0.80 N 7 1 CB A TRP 41 ? ? CG A TRP 41 ? ? CD1 A TRP 41 ? ? 117.43 127.00 -9.57 1.30 N 8 1 CG A TRP 41 ? ? CD1 A TRP 41 ? ? NE1 A TRP 41 ? ? 103.85 110.10 -6.25 1.00 N 9 1 CE2 A TRP 41 ? ? CD2 A TRP 41 ? ? CG A TRP 41 ? ? 101.16 107.30 -6.14 0.80 N 10 1 CG A TRP 41 ? ? CD2 A TRP 41 ? ? CE3 A TRP 41 ? ? 142.41 133.90 8.51 0.90 N 11 1 CA A HIS 46 ? ? CB A HIS 46 ? ? CG A HIS 46 ? ? 102.83 113.60 -10.77 1.70 N 12 1 CB A TYR 47 ? ? CG A TYR 47 ? ? CD1 A TYR 47 ? ? 112.51 121.00 -8.49 0.60 N 13 1 CG A TYR 47 ? ? CD2 A TYR 47 ? ? CE2 A TYR 47 ? ? 116.42 121.30 -4.88 0.80 N 14 1 NE A ARG 54 ? ? CZ A ARG 54 ? ? NH1 A ARG 54 ? ? 125.63 120.30 5.33 0.50 N 15 1 NE A ARG 55 ? ? CZ A ARG 55 ? ? NH1 A ARG 55 ? ? 126.99 120.30 6.69 0.50 N 16 1 NE A ARG 55 ? ? CZ A ARG 55 ? ? NH2 A ARG 55 ? ? 116.39 120.30 -3.91 0.50 N 17 1 CB A TYR 57 ? ? CG A TYR 57 ? ? CD2 A TYR 57 ? ? 116.13 121.00 -4.87 0.60 N 18 1 CG A TYR 57 ? ? CD1 A TYR 57 ? ? CE1 A TYR 57 ? ? 116.29 121.30 -5.01 0.80 N 19 1 NE A ARG 59 ? ? CZ A ARG 59 ? ? NH1 A ARG 59 ? ? 124.28 120.30 3.98 0.50 N 20 1 NE A ARG 59 ? ? CZ A ARG 59 ? ? NH2 A ARG 59 ? ? 115.30 120.30 -5.00 0.50 N 21 1 O A TYR 65 ? ? C A TYR 65 ? ? N A LYS 66 ? ? 112.64 122.70 -10.06 1.60 Y 22 1 N A HIS 67 ? ? CA A HIS 67 ? ? C A HIS 67 ? ? 127.94 111.00 16.94 2.70 N 23 1 CB A TYR 71 ? ? CG A TYR 71 ? ? CD1 A TYR 71 ? ? 116.91 121.00 -4.09 0.60 N 24 1 CB A ASP 76 ? ? CG A ASP 76 ? ? OD2 A ASP 76 ? ? 112.14 118.30 -6.16 0.90 N 25 1 CD1 A TRP 100 ? ? CG A TRP 100 ? ? CD2 A TRP 100 ? ? 111.58 106.30 5.28 0.80 N 26 1 CE2 A TRP 100 ? ? CD2 A TRP 100 ? ? CG A TRP 100 ? ? 101.86 107.30 -5.44 0.80 N 27 1 NE A ARG 103 ? ? CZ A ARG 103 ? ? NH1 A ARG 103 ? ? 125.87 120.30 5.57 0.50 N 28 1 CD1 A TRP 106 ? ? CG A TRP 106 ? ? CD2 A TRP 106 ? ? 111.29 106.30 4.99 0.80 N 29 1 CA A GLN 107 ? ? CB A GLN 107 ? ? CG A GLN 107 ? ? 128.74 113.40 15.34 2.20 N 30 1 CA A HIS 112 ? ? C A HIS 112 ? ? N A THR 113 ? ? 132.05 117.20 14.85 2.20 Y 31 1 NE A ARG 120 ? ? CZ A ARG 120 ? ? NH2 A ARG 120 ? ? 116.49 120.30 -3.81 0.50 N 32 1 CB A TYR 123 ? ? CG A TYR 123 ? ? CD2 A TYR 123 ? ? 117.26 121.00 -3.74 0.60 N 33 1 NE A ARG 127 ? ? CZ A ARG 127 ? ? NH1 A ARG 127 ? ? 128.03 120.30 7.73 0.50 N 34 1 CA A LYS 136 ? ? CB A LYS 136 ? ? CG A LYS 136 ? ? 129.49 113.40 16.09 2.20 N 35 1 CA A GLU 138 ? ? CB A GLU 138 ? ? CG A GLU 138 ? ? 127.55 113.40 14.15 2.20 N 36 1 CA A GLN 150 ? ? CB A GLN 150 ? ? CG A GLN 150 ? ? 97.61 113.40 -15.79 2.20 N 37 1 CB A ARG 176 ? ? CG A ARG 176 ? ? CD A ARG 176 ? ? 129.35 111.60 17.75 2.60 N 38 1 CA A GLU 184 ? ? CB A GLU 184 ? ? CG A GLU 184 ? ? 129.27 113.40 15.87 2.20 N 39 1 CG1 A VAL 186 ? ? CB A VAL 186 ? ? CG2 A VAL 186 ? ? 100.75 110.90 -10.15 1.60 N 40 1 CA A PRO 192 ? ? C A PRO 192 ? ? N A THR 193 ? ? 100.49 117.20 -16.71 2.20 Y 41 1 CD1 A TRP 194 ? ? CG A TRP 194 ? ? CD2 A TRP 194 ? ? 114.75 106.30 8.45 0.80 N 42 1 CB A TRP 194 ? ? CG A TRP 194 ? ? CD1 A TRP 194 ? ? 117.94 127.00 -9.06 1.30 N 43 1 CG A TRP 194 ? ? CD1 A TRP 194 ? ? NE1 A TRP 194 ? ? 103.58 110.10 -6.52 1.00 N 44 1 CE2 A TRP 194 ? ? CD2 A TRP 194 ? ? CG A TRP 194 ? ? 100.24 107.30 -7.06 0.80 N 45 1 CG A TRP 194 ? ? CD2 A TRP 194 ? ? CE3 A TRP 194 ? ? 140.42 133.90 6.52 0.90 N 46 1 CA A LEU 206 ? ? CB A LEU 206 ? ? CG A LEU 206 ? ? 129.74 115.30 14.44 2.30 N 47 1 CA A GLU 208 ? ? CB A GLU 208 ? ? CG A GLU 208 ? ? 126.61 113.40 13.21 2.20 N 48 1 CA A VAL 230 ? ? CB A VAL 230 ? ? CG1 A VAL 230 ? ? 100.04 110.90 -10.86 1.50 N 49 1 CA A THR 243 ? ? CB A THR 243 ? ? CG2 A THR 243 ? ? 102.43 112.40 -9.97 1.40 N 50 1 CB A LYS 250 ? ? CG A LYS 250 ? ? CD A LYS 250 ? ? 93.88 111.60 -17.72 2.60 N 51 1 N A MET 253 ? ? CA A MET 253 ? ? CB A MET 253 ? ? 99.71 110.60 -10.89 1.80 N 52 1 CG A MET 253 ? ? SD A MET 253 ? ? CE A MET 253 ? ? 87.88 100.20 -12.32 1.60 N 53 1 CB A TYR 278 ? ? CG A TYR 278 ? ? CD1 A TYR 278 ? ? 124.91 121.00 3.91 0.60 N 54 1 CA A ASN 301 ? ? C A ASN 301 ? ? N A GLU 302 ? ? 132.97 117.20 15.77 2.20 Y 55 1 CB A TYR 308 ? ? CG A TYR 308 ? ? CD2 A TYR 308 ? ? 117.30 121.00 -3.70 0.60 N 56 1 CD1 A TRP 336 ? ? CG A TRP 336 ? ? CD2 A TRP 336 ? ? 112.39 106.30 6.09 0.80 N 57 1 CE2 A TRP 336 ? ? CD2 A TRP 336 ? ? CG A TRP 336 ? ? 102.01 107.30 -5.29 0.80 N 58 1 CG A TRP 336 ? ? CD2 A TRP 336 ? ? CE3 A TRP 336 ? ? 140.23 133.90 6.33 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 12 ? ? -57.49 176.05 2 1 ASN A 23 ? ? -87.89 47.23 3 1 SER A 29 ? ? -49.57 -18.55 4 1 LYS A 40 ? ? -68.28 3.80 5 1 ASN A 62 ? ? 33.36 35.81 6 1 ASN A 63 ? ? 41.90 28.73 7 1 HIS A 67 ? ? -20.14 -3.64 8 1 ASP A 76 ? ? -68.56 80.80 9 1 ALA A 90 ? ? -143.70 -12.45 10 1 PHE A 92 ? ? -113.50 66.70 11 1 LEU A 104 ? ? -164.63 92.28 12 1 LEU A 121 ? ? -146.50 -48.31 13 1 PHE A 126 ? ? -71.58 40.76 14 1 ARG A 127 ? ? 12.65 -59.84 15 1 GLU A 143 ? ? -51.93 -83.64 16 1 LEU A 162 ? ? -68.95 -70.67 17 1 ASP A 179 ? ? -48.79 -70.91 18 1 ASN A 188 ? ? 67.34 -4.34 19 1 LEU A 191 ? ? -111.55 -167.52 20 1 ALA A 195 ? ? -113.95 76.73 21 1 ILE A 217 ? ? 51.13 -83.06 22 1 LYS A 219 ? ? 80.31 10.42 23 1 GLN A 220 ? ? -20.80 -75.75 24 1 LYS A 221 ? ? -38.64 -30.71 25 1 GLN A 227 ? ? -116.08 -100.61 26 1 GLN A 246 ? ? -155.70 -35.34 27 1 ALA A 256 ? ? -150.19 -142.11 28 1 VAL A 270 ? ? -145.37 15.98 29 1 ASN A 272 ? ? -64.65 17.07 30 1 ASN A 290 ? ? 64.28 -151.38 31 1 GLN A 304 ? ? -81.89 42.90 32 1 ASN A 305 ? ? 178.58 140.60 33 1 SER A 318 ? ? -105.66 64.82 34 1 PRO A 333 ? ? -36.34 127.10 35 1 TRP A 336 ? ? -75.34 -84.88 36 1 ALA A 337 ? ? -1.42 -84.83 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id ASP _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 128 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 10.45 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR A 52 ? ? 0.067 'SIDE CHAIN' 2 1 TYR A 65 ? ? 0.079 'SIDE CHAIN' 3 1 TYR A 182 ? ? 0.092 'SIDE CHAIN' 4 1 TYR A 278 ? ? 0.075 'SIDE CHAIN' 5 1 TYR A 298 ? ? 0.099 'SIDE CHAIN' # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 ? NAG 344 n B 2 NAG 2 B NAG 2 ? NAG 345 n B 2 BMA 3 B BMA 3 ? MAN 346 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 'VANADATE ION' VO4 #