HEADER TRANSFERASE 04-DEC-03 1RQB TITLE PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCARBOXYLASE 5S SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROPIONIBACTERIUM FREUDENREICHII SUBSP. SOURCE 3 SHERMANII; SOURCE 4 ORGANISM_TAXID: 1752; SOURCE 5 STRAIN: SUBSP. SHERMANII; SOURCE 6 GENE: 5S; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: TUNER(DE3)PLACI; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETBLUE-2 KEYWDS TIM-BARREL, CARBAMYLATED LYSINE, TRANSCARBOXYLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.R.HALL,R.ZHENG,L.ANTONY,M.PUSZTAI-CAREY,P.R.CAREY,V.C.YEE REVDAT 4 13-JUL-11 1RQB 1 VERSN REVDAT 3 24-FEB-09 1RQB 1 VERSN REVDAT 2 28-SEP-04 1RQB 1 JRNL REVDAT 1 07-SEP-04 1RQB 0 JRNL AUTH P.R.HALL,R.ZHENG,L.ANTONY,M.PUSZTAI-CAREY,P.R.CAREY,V.C.YEE JRNL TITL TRANSCARBOXYLASE 5S STRUCTURES: ASSEMBLY AND CATALYTIC JRNL TITL 2 MECHANISM OF A MULTIENZYME COMPLEX SUBUNIT. JRNL REF EMBO J. V. 23 3621 2004 JRNL REFN ISSN 0261-4189 JRNL PMID 15329673 JRNL DOI 10.1038/SJ.EMBOJ.7600373 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.R.HALL,R.ZHENG,M.PUSZTAI-CAREY,F.VAN DEN AKKER,P.R.CAREY, REMARK 1 AUTH 2 V.C.YEE REMARK 1 TITL EXPRESSION AND CRYSTALLIZATION OF SEVERAL FORMS OF THE REMARK 1 TITL 2 PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 521 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 14993680 REMARK 1 DOI 10.1107/S0907444903028294 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 256613.430 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 42109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1961 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5927 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 278 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3663 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.61000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.11 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.93 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.370 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.110 ; 3.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.140 ; 3.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.420 ; 4.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 37.22 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP2.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-03. REMARK 100 THE RCSB ID CODE IS RCSB020949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0734, 0.9803, 0.9808 REMARK 200 MONOCHROMATOR : DOUBLE FLAT SI CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42109 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.16400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, TRIS, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.50400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.50400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.23200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.96900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.23200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.96900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.50400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.23200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.96900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.50400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.23200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.96900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 192.92800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -39.50400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 589 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 791 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 545 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 820 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 699 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -10 REMARK 465 ALA A -9 REMARK 465 ILE A -8 REMARK 465 SER A -7 REMARK 465 ARG A -6 REMARK 465 GLU A -5 REMARK 465 LEU A -4 REMARK 465 VAL A -3 REMARK 465 ASP A -2 REMARK 465 PRO A -1 REMARK 465 ASN A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 GLU A 475 REMARK 465 GLY A 476 REMARK 465 ASP A 477 REMARK 465 GLU A 478 REMARK 465 LYS A 479 REMARK 465 SER A 480 REMARK 465 LEU A 481 REMARK 465 ALA A 482 REMARK 465 VAL A 483 REMARK 465 ALA A 484 REMARK 465 GLY A 485 REMARK 465 PRO A 486 REMARK 465 VAL A 487 REMARK 465 THR A 488 REMARK 465 TYR A 489 REMARK 465 ASN A 490 REMARK 465 VAL A 491 REMARK 465 ASN A 492 REMARK 465 VAL A 493 REMARK 465 GLY A 494 REMARK 465 GLY A 495 REMARK 465 THR A 496 REMARK 465 VAL A 497 REMARK 465 ARG A 498 REMARK 465 GLU A 499 REMARK 465 VAL A 500 REMARK 465 THR A 501 REMARK 465 VAL A 502 REMARK 465 GLN A 503 REMARK 465 GLN A 504 REMARK 465 ALA A 505 REMARK 465 THR A 506 REMARK 465 ARG A 507 REMARK 465 ALA A 508 REMARK 465 SER A 509 REMARK 465 GLN A 510 REMARK 465 PRO A 511 REMARK 465 GLU A 512 REMARK 465 LEU A 513 REMARK 465 ALA A 514 REMARK 465 PRO A 515 REMARK 465 GLU A 516 REMARK 465 ASP A 517 REMARK 465 PRO A 518 REMARK 465 GLU A 519 REMARK 465 ASP A 520 REMARK 465 LEU A 521 REMARK 465 GLU A 522 REMARK 465 HIS A 523 REMARK 465 HIS A 524 REMARK 465 HIS A 525 REMARK 465 HIS A 526 REMARK 465 HIS A 527 REMARK 465 HIS A 528 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 393 NZ LYS A 393 3654 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 22 -79.26 -137.91 REMARK 500 MSE A 29 42.29 -141.02 REMARK 500 CYS A 55 11.98 -145.46 REMARK 500 LEU A 97 -126.94 52.21 REMARK 500 LEU A 247 177.50 74.14 REMARK 500 MSE A 364 -73.59 -78.18 REMARK 500 GLU A 418 -4.89 -140.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 843 DISTANCE = 5.76 ANGSTROMS REMARK 525 HOH A 900 DISTANCE = 5.65 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 529 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 184 OQ1 REMARK 620 2 HIS A 215 NE2 93.6 REMARK 620 3 HIS A 217 NE2 110.6 99.3 REMARK 620 4 HOH A 885 O 86.6 171.7 88.3 REMARK 620 5 KCX A 184 OQ2 58.1 84.4 168.5 88.8 REMARK 620 6 ASP A 23 OD1 155.8 87.5 93.0 88.9 98.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 529 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RQE RELATED DB: PDB REMARK 900 PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT REMARK 900 BOUND TO OXALOACETATE REMARK 900 RELATED ID: 1RQH RELATED DB: PDB REMARK 900 PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT REMARK 900 BOUND TO PYRUVATE REMARK 900 RELATED ID: 1RR2 RELATED DB: PDB REMARK 900 PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT REMARK 900 BOUND TO 2-KETOBUTYRIC ACID DBREF 1RQB A 2 505 UNP Q70AC7 5S_PROFR 2 505 SEQADV 1RQB MSE A -10 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB ALA A -9 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB ILE A -8 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB SER A -7 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB ARG A -6 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB GLU A -5 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB LEU A -4 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB VAL A -3 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB ASP A -2 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB PRO A -1 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB ASN A 0 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB SER A 1 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB MSE A 29 UNP Q70AC7 MET 29 MODIFIED RESIDUE SEQADV 1RQB MSE A 33 UNP Q70AC7 MET 33 MODIFIED RESIDUE SEQADV 1RQB MSE A 35 UNP Q70AC7 MET 35 MODIFIED RESIDUE SEQADV 1RQB MSE A 38 UNP Q70AC7 MET 38 MODIFIED RESIDUE SEQADV 1RQB MSE A 83 UNP Q70AC7 MET 83 MODIFIED RESIDUE SEQADV 1RQB MSE A 90 UNP Q70AC7 MET 90 MODIFIED RESIDUE SEQADV 1RQB MSE A 120 UNP Q70AC7 MET 120 MODIFIED RESIDUE SEQADV 1RQB MSE A 129 UNP Q70AC7 MET 129 MODIFIED RESIDUE SEQADV 1RQB MSE A 135 UNP Q70AC7 MET 135 MODIFIED RESIDUE SEQADV 1RQB MSE A 139 UNP Q70AC7 MET 139 MODIFIED RESIDUE SEQADV 1RQB MSE A 176 UNP Q70AC7 MET 176 MODIFIED RESIDUE SEQADV 1RQB KCX A 184 UNP Q70AC7 LYS 184 MODIFIED RESIDUE SEQADV 1RQB MSE A 186 UNP Q70AC7 MET 186 MODIFIED RESIDUE SEQADV 1RQB MSE A 228 UNP Q70AC7 MET 228 MODIFIED RESIDUE SEQADV 1RQB MSE A 245 UNP Q70AC7 MET 245 MODIFIED RESIDUE SEQADV 1RQB MSE A 260 UNP Q70AC7 MET 260 MODIFIED RESIDUE SEQADV 1RQB MSE A 311 UNP Q70AC7 MET 311 MODIFIED RESIDUE SEQADV 1RQB MSE A 315 UNP Q70AC7 MET 315 MODIFIED RESIDUE SEQADV 1RQB MSE A 328 UNP Q70AC7 MET 328 MODIFIED RESIDUE SEQADV 1RQB MSE A 332 UNP Q70AC7 MET 332 MODIFIED RESIDUE SEQADV 1RQB MSE A 364 UNP Q70AC7 MET 364 MODIFIED RESIDUE SEQADV 1RQB MSE A 365 UNP Q70AC7 MET 365 MODIFIED RESIDUE SEQADV 1RQB MSE A 371 UNP Q70AC7 MET 371 MODIFIED RESIDUE SEQADV 1RQB MSE A 379 UNP Q70AC7 MET 379 MODIFIED RESIDUE SEQADV 1RQB THR A 506 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB ARG A 507 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB ALA A 508 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB SER A 509 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB GLN A 510 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB PRO A 511 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB GLU A 512 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB LEU A 513 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB ALA A 514 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB PRO A 515 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB GLU A 516 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB ASP A 517 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB PRO A 518 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB GLU A 519 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB ASP A 520 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB LEU A 521 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB GLU A 522 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB HIS A 523 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB HIS A 524 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB HIS A 525 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB HIS A 526 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB HIS A 527 UNP Q70AC7 CLONING ARTIFACT SEQADV 1RQB HIS A 528 UNP Q70AC7 CLONING ARTIFACT SEQRES 1 A 539 MSE ALA ILE SER ARG GLU LEU VAL ASP PRO ASN SER SER SEQRES 2 A 539 PRO ARG GLU ILE GLU VAL SER GLU PRO ARG GLU VAL GLY SEQRES 3 A 539 ILE THR GLU LEU VAL LEU ARG ASP ALA HIS GLN SER LEU SEQRES 4 A 539 MSE ALA THR ARG MSE ALA MSE GLU ASP MSE VAL GLY ALA SEQRES 5 A 539 CYS ALA ASP ILE ASP ALA ALA GLY TYR TRP SER VAL GLU SEQRES 6 A 539 CYS TRP GLY GLY ALA THR TYR ASP SER CYS ILE ARG PHE SEQRES 7 A 539 LEU ASN GLU ASP PRO TRP GLU ARG LEU ARG THR PHE ARG SEQRES 8 A 539 LYS LEU MSE PRO ASN SER ARG LEU GLN MSE LEU LEU ARG SEQRES 9 A 539 GLY GLN ASN LEU LEU GLY TYR ARG HIS TYR ASN ASP GLU SEQRES 10 A 539 VAL VAL ASP ARG PHE VAL ASP LYS SER ALA GLU ASN GLY SEQRES 11 A 539 MSE ASP VAL PHE ARG VAL PHE ASP ALA MSE ASN ASP PRO SEQRES 12 A 539 ARG ASN MSE ALA HIS ALA MSE ALA ALA VAL LYS LYS ALA SEQRES 13 A 539 GLY LYS HIS ALA GLN GLY THR ILE CYS TYR THR ILE SER SEQRES 14 A 539 PRO VAL HIS THR VAL GLU GLY TYR VAL LYS LEU ALA GLY SEQRES 15 A 539 GLN LEU LEU ASP MSE GLY ALA ASP SER ILE ALA LEU KCX SEQRES 16 A 539 ASP MSE ALA ALA LEU LEU LYS PRO GLN PRO ALA TYR ASP SEQRES 17 A 539 ILE ILE LYS ALA ILE LYS ASP THR TYR GLY GLN LYS THR SEQRES 18 A 539 GLN ILE ASN LEU HIS CYS HIS SER THR THR GLY VAL THR SEQRES 19 A 539 GLU VAL SER LEU MSE LYS ALA ILE GLU ALA GLY VAL ASP SEQRES 20 A 539 VAL VAL ASP THR ALA ILE SER SER MSE SER LEU GLY PRO SEQRES 21 A 539 GLY HIS ASN PRO THR GLU SER VAL ALA GLU MSE LEU GLU SEQRES 22 A 539 GLY THR GLY TYR THR THR ASN LEU ASP TYR ASP ARG LEU SEQRES 23 A 539 HIS LYS ILE ARG ASP HIS PHE LYS ALA ILE ARG PRO LYS SEQRES 24 A 539 TYR LYS LYS PHE GLU SER LYS THR LEU VAL ASP THR SER SEQRES 25 A 539 ILE PHE LYS SER GLN ILE PRO GLY GLY MSE LEU SER ASN SEQRES 26 A 539 MSE GLU SER GLN LEU ARG ALA GLN GLY ALA GLU ASP LYS SEQRES 27 A 539 MSE ASP GLU VAL MSE ALA GLU VAL PRO ARG VAL ARG LYS SEQRES 28 A 539 ALA ALA GLY PHE PRO PRO LEU VAL THR PRO SER SER GLN SEQRES 29 A 539 ILE VAL GLY THR GLN ALA VAL PHE ASN VAL MSE MSE GLY SEQRES 30 A 539 GLU TYR LYS ARG MSE THR GLY GLU PHE ALA ASP ILE MSE SEQRES 31 A 539 LEU GLY TYR TYR GLY ALA SER PRO ALA ASP ARG ASP PRO SEQRES 32 A 539 LYS VAL VAL LYS LEU ALA GLU GLU GLN SER GLY LYS LYS SEQRES 33 A 539 PRO ILE THR GLN ARG PRO ALA ASP LEU LEU PRO PRO GLU SEQRES 34 A 539 TRP GLU LYS GLN SER LYS GLU ALA ALA THR LEU LYS GLY SEQRES 35 A 539 PHE ASN GLY THR ASP GLU ASP VAL LEU THR TYR ALA LEU SEQRES 36 A 539 PHE PRO GLN VAL ALA PRO VAL PHE PHE GLU HIS ARG ALA SEQRES 37 A 539 GLU GLY PRO HIS SER VAL ALA LEU THR ASP ALA GLN LEU SEQRES 38 A 539 LYS ALA GLU ALA GLU GLY ASP GLU LYS SER LEU ALA VAL SEQRES 39 A 539 ALA GLY PRO VAL THR TYR ASN VAL ASN VAL GLY GLY THR SEQRES 40 A 539 VAL ARG GLU VAL THR VAL GLN GLN ALA THR ARG ALA SER SEQRES 41 A 539 GLN PRO GLU LEU ALA PRO GLU ASP PRO GLU ASP LEU GLU SEQRES 42 A 539 HIS HIS HIS HIS HIS HIS MODRES 1RQB MSE A 29 MET SELENOMETHIONINE MODRES 1RQB MSE A 33 MET SELENOMETHIONINE MODRES 1RQB MSE A 35 MET SELENOMETHIONINE MODRES 1RQB MSE A 38 MET SELENOMETHIONINE MODRES 1RQB MSE A 83 MET SELENOMETHIONINE MODRES 1RQB MSE A 90 MET SELENOMETHIONINE MODRES 1RQB MSE A 120 MET SELENOMETHIONINE MODRES 1RQB MSE A 129 MET SELENOMETHIONINE MODRES 1RQB MSE A 135 MET SELENOMETHIONINE MODRES 1RQB MSE A 139 MET SELENOMETHIONINE MODRES 1RQB MSE A 176 MET SELENOMETHIONINE MODRES 1RQB KCX A 184 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 1RQB MSE A 186 MET SELENOMETHIONINE MODRES 1RQB MSE A 228 MET SELENOMETHIONINE MODRES 1RQB MSE A 245 MET SELENOMETHIONINE MODRES 1RQB MSE A 260 MET SELENOMETHIONINE MODRES 1RQB MSE A 311 MET SELENOMETHIONINE MODRES 1RQB MSE A 315 MET SELENOMETHIONINE MODRES 1RQB MSE A 328 MET SELENOMETHIONINE MODRES 1RQB MSE A 332 MET SELENOMETHIONINE MODRES 1RQB MSE A 364 MET SELENOMETHIONINE MODRES 1RQB MSE A 365 MET SELENOMETHIONINE MODRES 1RQB MSE A 371 MET SELENOMETHIONINE MODRES 1RQB MSE A 379 MET SELENOMETHIONINE HET MSE A 29 8 HET MSE A 33 8 HET MSE A 35 8 HET MSE A 38 8 HET MSE A 83 8 HET MSE A 90 8 HET MSE A 120 8 HET MSE A 129 8 HET MSE A 135 8 HET MSE A 139 8 HET MSE A 176 8 HET KCX A 184 12 HET MSE A 186 8 HET MSE A 228 8 HET MSE A 245 8 HET MSE A 260 8 HET MSE A 311 8 HET MSE A 315 8 HET MSE A 328 8 HET MSE A 332 8 HET MSE A 364 8 HET MSE A 365 8 HET MSE A 371 8 HET MSE A 379 8 HET CO A 529 1 HETNAM MSE SELENOMETHIONINE HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM CO COBALT (II) ION FORMUL 1 MSE 23(C5 H11 N O2 SE) FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 CO CO 2+ FORMUL 3 HOH *372(H2 O) HELIX 1 1 ARG A 22 MSE A 29 1 8 HELIX 2 2 ALA A 34 GLY A 40 5 7 HELIX 3 3 ALA A 41 ALA A 48 1 8 HELIX 4 4 ALA A 59 PHE A 67 1 9 HELIX 5 5 ASP A 71 MSE A 83 1 13 HELIX 6 6 ARG A 93 LEU A 97 5 5 HELIX 7 7 ASN A 104 ASN A 118 1 15 HELIX 8 8 PRO A 132 ALA A 145 1 14 HELIX 9 9 THR A 162 MSE A 176 1 15 HELIX 10 10 LYS A 191 GLY A 207 1 17 HELIX 11 11 VAL A 222 ALA A 233 1 12 HELIX 12 12 ILE A 242 SER A 246 5 5 HELIX 13 13 PRO A 253 LEU A 261 1 9 HELIX 14 14 ASP A 271 ARG A 286 1 16 HELIX 15 15 PRO A 287 GLU A 293 5 7 HELIX 16 16 SER A 301 GLN A 306 1 6 HELIX 17 17 PRO A 308 ALA A 321 1 14 HELIX 18 18 LYS A 327 ALA A 342 1 16 HELIX 19 19 PRO A 350 GLY A 366 1 17 HELIX 20 20 THR A 372 LEU A 380 1 9 HELIX 21 21 ASP A 391 GLY A 403 1 13 HELIX 22 22 ARG A 410 LEU A 415 5 6 HELIX 23 23 GLU A 418 ALA A 427 1 10 HELIX 24 24 THR A 435 PHE A 445 1 11 HELIX 25 25 VAL A 448 ARG A 456 1 9 HELIX 26 26 ALA A 457 GLY A 459 5 3 HELIX 27 27 THR A 466 ALA A 474 1 9 SHEET 1 A 2 ARG A 12 GLU A 13 0 SHEET 2 A 2 TYR A 266 THR A 267 1 O THR A 267 N ARG A 12 SHEET 1 B 9 GLY A 15 GLU A 18 0 SHEET 2 B 9 SER A 52 GLY A 57 1 O GLU A 54 N GLU A 18 SHEET 3 B 9 LEU A 88 LEU A 92 1 O GLN A 89 N VAL A 53 SHEET 4 B 9 VAL A 122 VAL A 125 1 O ARG A 124 N LEU A 92 SHEET 5 B 9 HIS A 148 CYS A 154 1 O HIS A 148 N PHE A 123 SHEET 6 B 9 SER A 180 ASP A 185 1 O ALA A 182 N GLY A 151 SHEET 7 B 9 ILE A 212 CYS A 216 1 O HIS A 215 N ASP A 185 SHEET 8 B 9 VAL A 237 THR A 240 1 O VAL A 237 N LEU A 214 SHEET 9 B 9 GLY A 15 GLU A 18 1 N THR A 17 O THR A 240 LINK C LEU A 28 N MSE A 29 1555 1555 1.33 LINK C MSE A 29 N ALA A 30 1555 1555 1.33 LINK C ARG A 32 N MSE A 33 1555 1555 1.33 LINK C MSE A 33 N ALA A 34 1555 1555 1.33 LINK C ALA A 34 N MSE A 35 1555 1555 1.33 LINK C MSE A 35 N GLU A 36 1555 1555 1.33 LINK C ASP A 37 N MSE A 38 1555 1555 1.33 LINK C MSE A 38 N VAL A 39 1555 1555 1.33 LINK C LEU A 82 N MSE A 83 1555 1555 1.33 LINK C MSE A 83 N PRO A 84 1555 1555 1.34 LINK C GLN A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N LEU A 91 1555 1555 1.33 LINK C GLY A 119 N MSE A 120 1555 1555 1.33 LINK C MSE A 120 N ASP A 121 1555 1555 1.34 LINK C ALA A 128 N MSE A 129 1555 1555 1.33 LINK C MSE A 129 N ASN A 130 1555 1555 1.33 LINK C ASN A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N ALA A 136 1555 1555 1.33 LINK C ALA A 138 N MSE A 139 1555 1555 1.32 LINK C MSE A 139 N ALA A 140 1555 1555 1.33 LINK C ASP A 175 N MSE A 176 1555 1555 1.33 LINK C MSE A 176 N GLY A 177 1555 1555 1.33 LINK C LEU A 183 N KCX A 184 1555 1555 1.32 LINK C KCX A 184 N ASP A 185 1555 1555 1.33 LINK C ASP A 185 N MSE A 186 1555 1555 1.33 LINK C MSE A 186 N ALA A 187 1555 1555 1.33 LINK C LEU A 227 N MSE A 228 1555 1555 1.33 LINK C MSE A 228 N LYS A 229 1555 1555 1.33 LINK C SER A 244 N MSE A 245 1555 1555 1.33 LINK C MSE A 245 N SER A 246 1555 1555 1.34 LINK C GLU A 259 N MSE A 260 1555 1555 1.32 LINK C MSE A 260 N LEU A 261 1555 1555 1.33 LINK C GLY A 310 N MSE A 311 1555 1555 1.33 LINK C MSE A 311 N LEU A 312 1555 1555 1.33 LINK C ASN A 314 N MSE A 315 1555 1555 1.33 LINK C MSE A 315 N GLU A 316 1555 1555 1.33 LINK C LYS A 327 N MSE A 328 1555 1555 1.33 LINK C MSE A 328 N ASP A 329 1555 1555 1.33 LINK C VAL A 331 N MSE A 332 1555 1555 1.33 LINK C MSE A 332 N ALA A 333 1555 1555 1.33 LINK C VAL A 363 N MSE A 364 1555 1555 1.33 LINK C MSE A 364 N MSE A 365 1555 1555 1.33 LINK C MSE A 365 N GLY A 366 1555 1555 1.33 LINK C ARG A 370 N MSE A 371 1555 1555 1.33 LINK C MSE A 371 N THR A 372 1555 1555 1.33 LINK C ILE A 378 N MSE A 379 1555 1555 1.33 LINK C MSE A 379 N LEU A 380 1555 1555 1.33 LINK CO CO A 529 OQ1 KCX A 184 1555 1555 2.18 LINK CO CO A 529 NE2 HIS A 215 1555 1555 2.18 LINK CO CO A 529 NE2 HIS A 217 1555 1555 2.14 LINK CO CO A 529 O HOH A 885 1555 1555 2.26 LINK CO CO A 529 OQ2 KCX A 184 1555 1555 2.14 LINK CO CO A 529 OD1 ASP A 23 1555 1555 2.02 CISPEP 1 THR A 349 PRO A 350 0 0.12 SITE 1 AC1 5 ASP A 23 KCX A 184 HIS A 215 HIS A 217 SITE 2 AC1 5 HOH A 885 CRYST1 96.464 145.938 79.008 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010367 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006852 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012657 0.00000