HEADER LIGASE 05-DEC-03 1RQG TITLE METHIONYL-TRNA SYNTHETASE FROM PYROCOCCUS ABYSSI COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METHIONINE--TRNA LIGASE, METRS; COMPND 5 EC: 6.1.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 3 ORGANISM_TAXID: 29292; SOURCE 4 GENE: METG, METS, PYRAB09870, PAB2364; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3AMETPA-SD KEYWDS TRANSLATION, DIMERIZATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR T.CREPIN,E.SCHMITT,S.BLANQUET,Y.MECHULAM REVDAT 3 23-AUG-23 1RQG 1 REMARK LINK REVDAT 2 24-FEB-09 1RQG 1 VERSN REVDAT 1 25-MAY-04 1RQG 0 JRNL AUTH T.CREPIN,E.SCHMITT,S.BLANQUET,Y.MECHULAM JRNL TITL THREE-DIMENSIONAL STRUCTURE OF METHIONYL-TRNA SYNTHETASE JRNL TITL 2 FROM PYROCOCCUS ABYSSI. JRNL REF BIOCHEMISTRY V. 43 2635 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 14992601 JRNL DOI 10.1021/BI0356247 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 20041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1170 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE : 0.4180 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 43 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4973 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.79300 REMARK 3 B22 (A**2) : -7.79300 REMARK 3 B33 (A**2) : 15.58600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RQG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000020954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20834 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 72.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35800 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1A8H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5% PEG6000, 2% DIOXANE, 100MM MES, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 56.57500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 56.57500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.50800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.57500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.75400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.57500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 215.26200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.57500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 215.26200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.57500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.75400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 56.57500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 56.57500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 143.50800 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 56.57500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 56.57500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 143.50800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 56.57500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 215.26200 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 56.57500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 71.75400 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 56.57500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 71.75400 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 56.57500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 215.26200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 56.57500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 56.57500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 143.50800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). REMARK 300 THE AUTHOR STATES THAT THE BIOLOGICAL UNIT IS A DIMER, REMARK 300 BUT THAT THE IDENTIFICATION OF THE SECOND MOLECULE IS REMARK 300 AMBIGUOUS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 56.57500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 215.26200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 607 REMARK 465 LYS A 608 REMARK 465 GLU A 609 REMARK 465 LYS A 610 REMARK 465 LYS A 611 REMARK 465 GLU A 612 REMARK 465 GLY A 613 REMARK 465 LYS A 614 REMARK 465 GLU A 615 REMARK 465 MET A 616 REMARK 465 TYR A 617 REMARK 465 VAL A 618 REMARK 465 LYS A 619 REMARK 465 PHE A 620 REMARK 465 ASP A 621 REMARK 465 ASP A 622 REMARK 465 PHE A 623 REMARK 465 ALA A 624 REMARK 465 LYS A 625 REMARK 465 LEU A 626 REMARK 465 ASP A 627 REMARK 465 LEU A 628 REMARK 465 ARG A 629 REMARK 465 VAL A 630 REMARK 465 GLY A 631 REMARK 465 LYS A 632 REMARK 465 ILE A 633 REMARK 465 ILE A 634 REMARK 465 GLU A 635 REMARK 465 VAL A 636 REMARK 465 LYS A 637 REMARK 465 ASP A 638 REMARK 465 HIS A 639 REMARK 465 PRO A 640 REMARK 465 ASN A 641 REMARK 465 ALA A 642 REMARK 465 ASP A 643 REMARK 465 LYS A 644 REMARK 465 LEU A 645 REMARK 465 TYR A 646 REMARK 465 VAL A 647 REMARK 465 VAL A 648 REMARK 465 LYS A 649 REMARK 465 VAL A 650 REMARK 465 ASP A 651 REMARK 465 LEU A 652 REMARK 465 GLY A 653 REMARK 465 ASP A 654 REMARK 465 GLU A 655 REMARK 465 VAL A 656 REMARK 465 ARG A 657 REMARK 465 THR A 658 REMARK 465 LEU A 659 REMARK 465 VAL A 660 REMARK 465 ALA A 661 REMARK 465 GLY A 662 REMARK 465 LEU A 663 REMARK 465 LYS A 664 REMARK 465 LYS A 665 REMARK 465 TYR A 666 REMARK 465 TYR A 667 REMARK 465 LYS A 668 REMARK 465 PRO A 669 REMARK 465 GLU A 670 REMARK 465 GLU A 671 REMARK 465 LEU A 672 REMARK 465 LEU A 673 REMARK 465 ASN A 674 REMARK 465 ARG A 675 REMARK 465 TYR A 676 REMARK 465 VAL A 677 REMARK 465 VAL A 678 REMARK 465 VAL A 679 REMARK 465 VAL A 680 REMARK 465 ALA A 681 REMARK 465 ASN A 682 REMARK 465 LEU A 683 REMARK 465 GLU A 684 REMARK 465 PRO A 685 REMARK 465 LYS A 686 REMARK 465 LYS A 687 REMARK 465 LEU A 688 REMARK 465 ARG A 689 REMARK 465 GLY A 690 REMARK 465 ILE A 691 REMARK 465 GLY A 692 REMARK 465 SER A 693 REMARK 465 GLN A 694 REMARK 465 GLY A 695 REMARK 465 MET A 696 REMARK 465 LEU A 697 REMARK 465 LEU A 698 REMARK 465 ALA A 699 REMARK 465 ALA A 700 REMARK 465 ASP A 701 REMARK 465 ASP A 702 REMARK 465 GLY A 703 REMARK 465 GLU A 704 REMARK 465 ARG A 705 REMARK 465 VAL A 706 REMARK 465 ALA A 707 REMARK 465 LEU A 708 REMARK 465 LEU A 709 REMARK 465 MET A 710 REMARK 465 PRO A 711 REMARK 465 ASP A 712 REMARK 465 LYS A 713 REMARK 465 GLU A 714 REMARK 465 VAL A 715 REMARK 465 LYS A 716 REMARK 465 LEU A 717 REMARK 465 GLY A 718 REMARK 465 ALA A 719 REMARK 465 LYS A 720 REMARK 465 VAL A 721 REMARK 465 ARG A 722 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 ILE A 140 CG1 CG2 CD1 REMARK 470 THR A 142 OG1 CG2 REMARK 470 PRO A 144 CG CD REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 ASP A 150 CG OD1 OD2 REMARK 470 GLN A 151 CG CD OE1 NE2 REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 VAL A 158 CG1 CG2 REMARK 470 ARG A 161 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 162 CG CD REMARK 470 LEU A 163 CG CD1 CD2 REMARK 470 THR A 164 OG1 CG2 REMARK 470 LYS A 318 CG CD CE NZ REMARK 470 GLU A 481 CG CD OE1 OE2 REMARK 470 LYS A 483 CG CD CE NZ REMARK 470 GLU A 593 CG CD OE1 OE2 REMARK 470 ILE A 605 CG1 CG2 CD1 REMARK 470 LYS A 606 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 207 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 25 -9.73 -149.15 REMARK 500 LYS A 86 39.51 71.34 REMARK 500 SER A 88 45.25 -78.69 REMARK 500 ASP A 136 -102.30 3.66 REMARK 500 ARG A 137 9.98 -53.03 REMARK 500 PRO A 144 70.63 -107.47 REMARK 500 TYR A 145 -53.66 157.21 REMARK 500 ASP A 150 98.57 64.34 REMARK 500 ASP A 154 53.83 -146.53 REMARK 500 GLN A 155 -44.81 -134.34 REMARK 500 CYS A 156 -155.27 80.41 REMARK 500 GLU A 157 9.68 -174.25 REMARK 500 CYS A 159 -30.26 -171.94 REMARK 500 PRO A 162 87.35 58.10 REMARK 500 THR A 164 139.86 -38.02 REMARK 500 PRO A 165 -16.96 -49.65 REMARK 500 ILE A 180 159.94 -43.82 REMARK 500 GLU A 204 -72.39 -49.06 REMARK 500 PRO A 207 35.31 -63.34 REMARK 500 ASN A 211 -12.95 -49.41 REMARK 500 GLU A 221 -4.71 -55.26 REMARK 500 LYS A 274 65.38 -114.28 REMARK 500 PRO A 275 -38.33 -33.25 REMARK 500 ILE A 285 -106.67 -75.16 REMARK 500 GLN A 288 25.03 -178.35 REMARK 500 ILE A 305 -74.84 -130.85 REMARK 500 LYS A 318 83.98 -160.02 REMARK 500 GLU A 320 -12.61 71.37 REMARK 500 VAL A 322 135.36 -34.87 REMARK 500 GLU A 336 -173.64 -67.44 REMARK 500 ARG A 349 1.70 -66.72 REMARK 500 PRO A 376 48.62 -68.54 REMARK 500 GLU A 377 -98.10 -57.45 REMARK 500 GLU A 395 -63.63 -98.03 REMARK 500 ASN A 399 -74.79 -108.92 REMARK 500 MET A 448 -8.68 -56.49 REMARK 500 ARG A 451 69.81 -102.89 REMARK 500 HIS A 472 62.65 -117.31 REMARK 500 LYS A 473 -14.13 -157.87 REMARK 500 GLN A 474 70.23 26.54 REMARK 500 LYS A 477 -64.09 -90.13 REMARK 500 GLU A 481 -57.20 -137.20 REMARK 500 GLU A 505 -63.23 -23.10 REMARK 500 GLU A 523 122.95 -25.58 REMARK 500 GLU A 542 -160.78 -107.04 REMARK 500 TYR A 560 -73.71 -112.53 REMARK 500 ALA A 562 -83.77 -38.72 REMARK 500 ASN A 565 72.15 -171.27 REMARK 500 ASP A 574 31.31 -74.07 REMARK 500 ASP A 592 32.94 -80.81 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 145 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 127 SG REMARK 620 2 ASP A 130 OD1 95.2 REMARK 620 3 CYS A 173 SG 117.0 115.3 REMARK 620 4 CYS A 176 SG 99.3 91.8 130.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 143 SG REMARK 620 2 CYS A 146 SG 101.2 REMARK 620 3 CYS A 156 SG 96.0 161.2 REMARK 620 4 CYS A 159 SG 100.8 78.1 106.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 802 DBREF 1RQG A 1 722 UNP Q9V011 SYM_PYRAB 1 722 SEQRES 1 A 722 MET VAL ARG TYR MET VAL THR SER ALA LEU PRO TYR ALA SEQRES 2 A 722 ASN GLY PRO ILE HIS ALA GLY HIS LEU ALA GLY ALA TYR SEQRES 3 A 722 LEU PRO ALA ASP ILE PHE VAL ARG TYR LEU ARG LEU LYS SEQRES 4 A 722 GLY GLU ASP VAL VAL PHE ILE CYS GLY THR ASP GLU HIS SEQRES 5 A 722 GLY THR PRO ILE SER PHE ARG ALA LEU LYS GLU GLY ARG SEQRES 6 A 722 SER PRO ARG GLU ILE VAL ASP GLU PHE HIS GLU GLN ILE SEQRES 7 A 722 LYS ILE THR PHE GLN ARG ALA LYS ILE SER PHE ASP PHE SEQRES 8 A 722 PHE GLY ARG THR GLU LEU PRO ILE HIS TYR LYS LEU SER SEQRES 9 A 722 GLN GLU PHE PHE LEU LYS ALA TYR GLU ASN GLY HIS LEU SEQRES 10 A 722 VAL LYS LYS VAL THR LYS GLN ALA TYR CYS GLU HIS ASP SEQRES 11 A 722 LYS MET PHE LEU PRO ASP ARG PHE VAL ILE GLY THR CYS SEQRES 12 A 722 PRO TYR CYS GLY ALA GLU ASP GLN LYS GLY ASP GLN CYS SEQRES 13 A 722 GLU VAL CYS GLY ARG PRO LEU THR PRO GLU ILE LEU ILE SEQRES 14 A 722 ASN PRO ARG CYS ALA ILE CYS GLY ARG PRO ILE SER PHE SEQRES 15 A 722 ARG ASP SER ALA HIS TYR TYR ILE LYS MET GLN ASP PHE SEQRES 16 A 722 ALA GLU ARG LEU LYS ARG TRP ILE GLU LYS GLN PRO TRP SEQRES 17 A 722 LYS PRO ASN VAL LYS ASN MET VAL LEU SER TRP ILE GLU SEQRES 18 A 722 GLU GLY LEU GLU GLU ARG ALA ILE THR ARG ASP LEU ASN SEQRES 19 A 722 TRP GLY ILE PRO VAL PRO LEU ASP GLU GLU ASP MET LYS SEQRES 20 A 722 GLY LYS VAL LEU TYR VAL TRP PHE GLU ALA PRO ILE GLY SEQRES 21 A 722 TYR ILE SER ILE THR ILE GLU HIS PHE LYS ARG ILE GLY SEQRES 22 A 722 LYS PRO ASN GLU TRP LYS LYS TYR TRP LEU ASN ILE ASP SEQRES 23 A 722 GLY GLN THR ARG VAL ILE HIS PHE ILE GLY LYS ASP ASN SEQRES 24 A 722 ILE PRO PHE HIS ALA ILE PHE TRP PRO ALA PHE LEU MET SEQRES 25 A 722 ALA TYR GLY LYS TYR LYS ASP GLU GLU VAL GLU ALA GLU SEQRES 26 A 722 TRP ASN LEU PRO TYR ASP ILE PRO ALA ASN GLU TYR LEU SEQRES 27 A 722 THR LEU GLU GLY LYS LYS PHE SER THR SER ARG ASN TRP SEQRES 28 A 722 ALA ILE TRP VAL HIS GLU PHE LEU ASP VAL PHE PRO ALA SEQRES 29 A 722 ASP TYR LEU ARG TYR TYR LEU THR THR ILE MET PRO GLU SEQRES 30 A 722 THR ARG ASP SER ASP PHE SER PHE SER ASP PHE LYS VAL SEQRES 31 A 722 ARG ILE ASN GLU GLU LEU VAL ASN ASN LEU GLY ASN PHE SEQRES 32 A 722 VAL HIS ARG ALA LEU THR PHE VAL ASN ARG TYR PHE ASP SEQRES 33 A 722 GLY VAL VAL PRO GLU ARG GLY GLU LEU ASP GLU LEU ASP SEQRES 34 A 722 ARG GLU ALA LEU GLU GLU ILE GLU LYS ALA PHE LYS GLU SEQRES 35 A 722 VAL GLY GLU LEU ILE MET ASN TYR ARG PHE LYS ASP ALA SEQRES 36 A 722 LEU LYS ARG VAL MET SER LEU ALA SER PHE GLY ASN ARG SEQRES 37 A 722 TYR PHE ASP HIS LYS GLN PRO TRP LYS THR ALA LYS GLU SEQRES 38 A 722 ASP LYS VAL ARG THR GLY THR THR VAL ASN ILE SER LEU SEQRES 39 A 722 GLN ILE VAL LYS ALA LEU GLY ILE LEU LEU GLU PRO PHE SEQRES 40 A 722 LEU PRO ASP ALA SER GLU LYS ILE TRP HIS LEU LEU ASN SEQRES 41 A 722 LEU ASP GLU VAL LYS ARG TRP GLU PHE ARG GLU LEU PRO SEQRES 42 A 722 ALA GLY HIS LYS VAL ARG LYS PRO GLU ILE LEU PHE LYS SEQRES 43 A 722 LYS VAL THR ASP ASP GLN ILE ILE TYR PHE ILE LEU ASN SEQRES 44 A 722 TYR MET ALA LYS GLY ASN PRO GLU GLY ALA ARG ILE LEU SEQRES 45 A 722 LEU ASP LYS TYR TYR LYS ARG GLU ASP VAL ILE ARG VAL SEQRES 46 A 722 ALA LYS GLU LYS PHE GLY ASP GLU ALA GLU VAL VAL LEU SEQRES 47 A 722 ARG ARG VAL TYR LYS ASP ILE LYS LEU LYS GLU LYS LYS SEQRES 48 A 722 GLU GLY LYS GLU MET TYR VAL LYS PHE ASP ASP PHE ALA SEQRES 49 A 722 LYS LEU ASP LEU ARG VAL GLY LYS ILE ILE GLU VAL LYS SEQRES 50 A 722 ASP HIS PRO ASN ALA ASP LYS LEU TYR VAL VAL LYS VAL SEQRES 51 A 722 ASP LEU GLY ASP GLU VAL ARG THR LEU VAL ALA GLY LEU SEQRES 52 A 722 LYS LYS TYR TYR LYS PRO GLU GLU LEU LEU ASN ARG TYR SEQRES 53 A 722 VAL VAL VAL VAL ALA ASN LEU GLU PRO LYS LYS LEU ARG SEQRES 54 A 722 GLY ILE GLY SER GLN GLY MET LEU LEU ALA ALA ASP ASP SEQRES 55 A 722 GLY GLU ARG VAL ALA LEU LEU MET PRO ASP LYS GLU VAL SEQRES 56 A 722 LYS LEU GLY ALA LYS VAL ARG HET ZN A 801 1 HET ZN A 802 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *51(H2 O) HELIX 1 1 HIS A 18 TYR A 26 1 9 HELIX 2 2 TYR A 26 LYS A 39 1 14 HELIX 3 3 GLY A 53 GLY A 64 1 12 HELIX 4 4 SER A 66 LYS A 86 1 21 HELIX 5 5 LEU A 97 ASN A 114 1 18 HELIX 6 6 PRO A 135 VAL A 139 5 5 HELIX 7 7 MET A 192 ASP A 194 5 3 HELIX 8 8 PHE A 195 LYS A 205 1 11 HELIX 9 9 LYS A 209 GLU A 221 1 13 HELIX 10 10 TYR A 252 ALA A 257 1 6 HELIX 11 11 ILE A 259 ILE A 272 1 14 HELIX 12 12 TRP A 278 LEU A 283 1 6 HELIX 13 13 ASN A 299 ILE A 305 1 7 HELIX 14 14 ILE A 305 ALA A 313 1 9 HELIX 15 15 TRP A 354 LEU A 359 1 6 HELIX 16 16 PRO A 363 ILE A 374 1 12 HELIX 17 17 SER A 384 GLU A 395 1 12 HELIX 18 18 ASN A 399 TYR A 414 1 16 HELIX 19 19 ASP A 426 ASN A 449 1 24 HELIX 20 20 ARG A 451 HIS A 472 1 22 HELIX 21 21 GLN A 474 ALA A 479 1 6 HELIX 22 22 ASP A 482 GLU A 505 1 24 HELIX 23 23 LEU A 508 LEU A 519 1 12 HELIX 24 24 THR A 549 TYR A 560 1 12 HELIX 25 25 ASN A 565 TYR A 577 1 13 HELIX 26 26 LYS A 578 GLY A 591 1 14 HELIX 27 27 ALA A 594 TYR A 602 1 9 SHEET 1 A 5 PHE A 91 ARG A 94 0 SHEET 2 A 5 ASP A 42 THR A 49 1 N CYS A 47 O GLY A 93 SHEET 3 A 5 ARG A 3 SER A 8 1 N TYR A 4 O ASP A 42 SHEET 4 A 5 THR A 289 GLY A 296 1 O PHE A 294 N THR A 7 SHEET 5 A 5 ALA A 334 ASN A 335 1 O ASN A 335 N ILE A 295 SHEET 1 B 3 LEU A 117 TYR A 126 0 SHEET 2 B 3 SER A 181 ILE A 190 -1 O SER A 185 N THR A 122 SHEET 3 B 3 ARG A 227 ALA A 228 -1 O ARG A 227 N ILE A 190 SHEET 1 C 2 THR A 230 ARG A 231 0 SHEET 2 C 2 VAL A 250 LEU A 251 -1 O VAL A 250 N ARG A 231 SHEET 1 D 3 LYS A 343 LYS A 344 0 SHEET 2 D 3 LEU A 338 LEU A 340 -1 N LEU A 340 O LYS A 343 SHEET 3 D 3 SER A 381 PHE A 383 1 O PHE A 383 N THR A 339 LINK SG CYS A 127 ZN ZN A 801 1555 1555 2.46 LINK OD1 ASP A 130 ZN ZN A 801 1555 1555 2.66 LINK SG CYS A 143 ZN ZN A 802 1555 1555 2.55 LINK SG CYS A 146 ZN ZN A 802 1555 1555 3.28 LINK SG CYS A 156 ZN ZN A 802 1555 1555 3.47 LINK SG CYS A 159 ZN ZN A 802 1555 1555 3.39 LINK SG CYS A 173 ZN ZN A 801 1555 1555 2.56 LINK SG CYS A 176 ZN ZN A 801 1555 1555 2.68 SITE 1 AC1 4 CYS A 127 ASP A 130 CYS A 173 CYS A 176 SITE 1 AC2 5 CYS A 143 CYS A 146 CYS A 156 VAL A 158 SITE 2 AC2 5 CYS A 159 CRYST1 113.150 113.150 287.016 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008838 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003484 0.00000