HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 10-DEC-03 1RTY TITLE CRYSTAL STRUCTURE OF BACILLUS SUBTILIS YVQK, A PUTATIVE ATP-BINDING TITLE 2 COBALAMIN ADENOSYLTRANSFERASE, THE NORTH EAST STRUCTURAL GENOMICS TITLE 3 TARGET SR128 COMPND MOL_ID: 1; COMPND 2 MOLECULE: YVQK PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YVQK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS ALL ALPHA-HELICAL TRIMERIC PROTEIN, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR F.FOROUHAR,I.LEE,R.XIAO,T.B.ACTON,G.T.MONTELIONE,L.TONG,NORTHEAST AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 6 15-NOV-23 1RTY 1 REMARK REVDAT 5 23-AUG-23 1RTY 1 REMARK SEQADV LINK REVDAT 4 24-FEB-09 1RTY 1 VERSN REVDAT 3 16-SEP-08 1RTY 1 JRNL REVDAT 2 25-JAN-05 1RTY 1 AUTHOR KEYWDS REMARK REVDAT 1 23-DEC-03 1RTY 0 JRNL AUTH F.FOROUHAR,A.KUZIN,J.SEETHARAMAN,I.LEE,W.ZHOU,M.ABASHIDZE, JRNL AUTH 2 Y.CHEN,W.YONG,H.JANJUA,Y.FANG,D.WANG,K.CUNNINGHAM,R.XIAO, JRNL AUTH 3 T.B.ACTON,E.PICHERSKY,D.F.KLESSIG,C.W.PORTER,G.T.MONTELIONE, JRNL AUTH 4 L.TONG JRNL TITL FUNCTIONAL INSIGHTS FROM STRUCTURAL GENOMICS. JRNL REF J.STRUCT.FUNCT.GENOM. V. 8 37 2007 JRNL REFN ISSN 1345-711X JRNL PMID 17588214 JRNL DOI 10.1007/S10969-007-9018-3 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 304817.150 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.4 REMARK 3 NUMBER OF REFLECTIONS : 39984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.400 REMARK 3 FREE R VALUE TEST SET COUNT : 3755 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4996 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 541 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3804 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.29 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.730 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 35.47 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : PO4.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : PO4.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ONLY THE FIVE N-TERMINAL RESIDUES OF REMARK 3 THE MONOMER B HAVE CLEAR DENSITY, AS THEY HAVE BEEN MODELED. REMARK 3 HOWEVER, PRIOR TO THE INITIATING METHIONINE OF THE MONOMER B, REMARK 3 THERE IS AN ADDITIONAL DENSITY OF AN UNRECOGNIZABLE SHAPE WITH REMARK 3 THE MOLECULAR MASS OF 100-150 DALTON. OUR MASS SPECTRUM ALSO REMARK 3 REVEALS A PEAK, CORRESPONDING TO 130 DALTON. MOREOVER, THE REMARK 3 UNKNOWN CHEMICAL ENTITY POSSIBLY IS COVALENTLY BOUND TO THE REMARK 3 METHIONINE. REMARK 4 REMARK 4 1RTY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000021033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793, 0.97959, 0.97237 REMARK 200 MONOCHROMATOR : MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39984 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 24.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : 0.10800 REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.25900 REMARK 200 R SYM FOR SHELL (I) : 0.28300 REMARK 200 FOR SHELL : 3.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: PDB ENTRY 1NOG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MES, 12% PEG 20,000 , PH 6.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE PROTEIN MOST LIKELY FUNCTIONS AS A TRIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 TYR A 4 REMARK 465 THR A 5 REMARK 465 LYS A 6 REMARK 465 THR A 7 REMARK 465 GLY A 8 REMARK 465 ASP A 9 REMARK 465 LYS A 10 REMARK 465 GLY A 11 REMARK 465 GLN A 12 REMARK 465 THR A 13 REMARK 465 GLY A 14 REMARK 465 LEU A 15 REMARK 465 VAL A 16 REMARK 465 GLY A 17 REMARK 465 GLY A 18 REMARK 465 ARG A 19 REMARK 465 THR A 20 REMARK 465 ASP A 21 REMARK 465 GLU A 79 REMARK 465 ARG A 80 REMARK 465 LYS A 81 REMARK 465 ILE A 183 REMARK 465 VAL A 184 REMARK 465 PHE A 185 REMARK 465 ARG A 186 REMARK 465 ASP A 187 REMARK 465 ARG A 188 REMARK 465 ASN A 189 REMARK 465 SER A 190 REMARK 465 SER A 191 REMARK 465 GLU A 192 REMARK 465 SER A 193 REMARK 465 LYS B 6 REMARK 465 THR B 7 REMARK 465 GLY B 8 REMARK 465 ASP B 9 REMARK 465 LYS B 10 REMARK 465 GLY B 11 REMARK 465 GLN B 12 REMARK 465 THR B 13 REMARK 465 GLY B 14 REMARK 465 LEU B 15 REMARK 465 VAL B 16 REMARK 465 GLY B 17 REMARK 465 GLY B 18 REMARK 465 ARG B 19 REMARK 465 THR B 20 REMARK 465 ASP B 21 REMARK 465 LYS B 22 REMARK 465 SER B 181 REMARK 465 ALA B 182 REMARK 465 ILE B 183 REMARK 465 VAL B 184 REMARK 465 PHE B 185 REMARK 465 ARG B 186 REMARK 465 ASP B 187 REMARK 465 ARG B 188 REMARK 465 ASN B 189 REMARK 465 SER B 190 REMARK 465 SER B 191 REMARK 465 GLU B 192 REMARK 465 SER B 193 REMARK 465 MSE C 1 REMARK 465 LYS C 2 REMARK 465 LEU C 3 REMARK 465 TYR C 4 REMARK 465 THR C 5 REMARK 465 LYS C 6 REMARK 465 THR C 7 REMARK 465 GLY C 8 REMARK 465 ASP C 9 REMARK 465 LYS C 10 REMARK 465 GLY C 11 REMARK 465 GLN C 12 REMARK 465 THR C 13 REMARK 465 GLY C 14 REMARK 465 LEU C 15 REMARK 465 VAL C 16 REMARK 465 GLY C 17 REMARK 465 GLY C 18 REMARK 465 ARG C 19 REMARK 465 THR C 20 REMARK 465 ASP C 21 REMARK 465 ILE C 76 REMARK 465 VAL C 77 REMARK 465 THR C 78 REMARK 465 GLU C 79 REMARK 465 ARG C 80 REMARK 465 LYS C 81 REMARK 465 ASP C 82 REMARK 465 SER C 191 REMARK 465 GLU C 192 REMARK 465 SER C 193 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 275 O HOH B 275 2655 1.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 23 117.92 60.11 REMARK 500 VAL A 77 31.58 -145.49 REMARK 500 ARG A 180 -107.64 -17.18 REMARK 500 SER A 181 72.16 36.91 REMARK 500 ALA B 75 -86.62 -116.86 REMARK 500 ALA B 104 151.76 -47.05 REMARK 500 HIS C 146 105.60 -47.12 REMARK 500 GLU C 147 12.91 -69.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 194 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR128 RELATED DB: TARGETDB DBREF 1RTY A 2 193 UNP O34899 O34899_BACSU 2 193 DBREF 1RTY B 2 193 UNP O34899 O34899_BACSU 2 193 DBREF 1RTY C 2 193 UNP O34899 O34899_BACSU 2 193 SEQADV 1RTY MSE A 1 UNP O34899 MODIFIED RESIDUE SEQADV 1RTY MSE A 140 UNP O34899 MET 140 MODIFIED RESIDUE SEQADV 1RTY MSE B 1 UNP O34899 MODIFIED RESIDUE SEQADV 1RTY MSE B 140 UNP O34899 MET 140 MODIFIED RESIDUE SEQADV 1RTY MSE C 1 UNP O34899 MODIFIED RESIDUE SEQADV 1RTY MSE C 140 UNP O34899 MET 140 MODIFIED RESIDUE SEQRES 1 A 193 MSE LYS LEU TYR THR LYS THR GLY ASP LYS GLY GLN THR SEQRES 2 A 193 GLY LEU VAL GLY GLY ARG THR ASP LYS ASP SER LEU ARG SEQRES 3 A 193 VAL GLU SER TYR GLY THR ILE ASP GLU LEU ASN SER PHE SEQRES 4 A 193 ILE GLY LEU ALA LEU ALA GLU LEU SER GLY GLN PRO GLY SEQRES 5 A 193 PHE GLU ASP LEU THR ALA GLU LEU LEU THR ILE GLN HIS SEQRES 6 A 193 GLU LEU PHE ASP CYS GLY GLY ASP LEU ALA ILE VAL THR SEQRES 7 A 193 GLU ARG LYS ASP TYR LYS LEU THR GLU GLU SER VAL SER SEQRES 8 A 193 PHE LEU GLU THR ARG ILE ASP ALA TYR THR ALA GLU ALA SEQRES 9 A 193 PRO GLU LEU LYS LYS PHE ILE LEU PRO GLY GLY SER LYS SEQRES 10 A 193 CYS ALA SER LEU LEU HIS ILE ALA ARG THR ILE THR ARG SEQRES 11 A 193 ARG ALA GLU ARG ARG VAL VAL ALA LEU MSE LYS SER GLU SEQRES 12 A 193 GLU ILE HIS GLU THR VAL LEU ARG TYR LEU ASN ARG LEU SEQRES 13 A 193 SER ASP TYR PHE PHE ALA GLY ALA ARG VAL VAL ASN ALA SEQRES 14 A 193 ARG SER GLY ILE GLY ASP VAL GLU TYR GLU ARG SER ALA SEQRES 15 A 193 ILE VAL PHE ARG ASP ARG ASN SER SER GLU SER SEQRES 1 B 193 MSE LYS LEU TYR THR LYS THR GLY ASP LYS GLY GLN THR SEQRES 2 B 193 GLY LEU VAL GLY GLY ARG THR ASP LYS ASP SER LEU ARG SEQRES 3 B 193 VAL GLU SER TYR GLY THR ILE ASP GLU LEU ASN SER PHE SEQRES 4 B 193 ILE GLY LEU ALA LEU ALA GLU LEU SER GLY GLN PRO GLY SEQRES 5 B 193 PHE GLU ASP LEU THR ALA GLU LEU LEU THR ILE GLN HIS SEQRES 6 B 193 GLU LEU PHE ASP CYS GLY GLY ASP LEU ALA ILE VAL THR SEQRES 7 B 193 GLU ARG LYS ASP TYR LYS LEU THR GLU GLU SER VAL SER SEQRES 8 B 193 PHE LEU GLU THR ARG ILE ASP ALA TYR THR ALA GLU ALA SEQRES 9 B 193 PRO GLU LEU LYS LYS PHE ILE LEU PRO GLY GLY SER LYS SEQRES 10 B 193 CYS ALA SER LEU LEU HIS ILE ALA ARG THR ILE THR ARG SEQRES 11 B 193 ARG ALA GLU ARG ARG VAL VAL ALA LEU MSE LYS SER GLU SEQRES 12 B 193 GLU ILE HIS GLU THR VAL LEU ARG TYR LEU ASN ARG LEU SEQRES 13 B 193 SER ASP TYR PHE PHE ALA GLY ALA ARG VAL VAL ASN ALA SEQRES 14 B 193 ARG SER GLY ILE GLY ASP VAL GLU TYR GLU ARG SER ALA SEQRES 15 B 193 ILE VAL PHE ARG ASP ARG ASN SER SER GLU SER SEQRES 1 C 193 MSE LYS LEU TYR THR LYS THR GLY ASP LYS GLY GLN THR SEQRES 2 C 193 GLY LEU VAL GLY GLY ARG THR ASP LYS ASP SER LEU ARG SEQRES 3 C 193 VAL GLU SER TYR GLY THR ILE ASP GLU LEU ASN SER PHE SEQRES 4 C 193 ILE GLY LEU ALA LEU ALA GLU LEU SER GLY GLN PRO GLY SEQRES 5 C 193 PHE GLU ASP LEU THR ALA GLU LEU LEU THR ILE GLN HIS SEQRES 6 C 193 GLU LEU PHE ASP CYS GLY GLY ASP LEU ALA ILE VAL THR SEQRES 7 C 193 GLU ARG LYS ASP TYR LYS LEU THR GLU GLU SER VAL SER SEQRES 8 C 193 PHE LEU GLU THR ARG ILE ASP ALA TYR THR ALA GLU ALA SEQRES 9 C 193 PRO GLU LEU LYS LYS PHE ILE LEU PRO GLY GLY SER LYS SEQRES 10 C 193 CYS ALA SER LEU LEU HIS ILE ALA ARG THR ILE THR ARG SEQRES 11 C 193 ARG ALA GLU ARG ARG VAL VAL ALA LEU MSE LYS SER GLU SEQRES 12 C 193 GLU ILE HIS GLU THR VAL LEU ARG TYR LEU ASN ARG LEU SEQRES 13 C 193 SER ASP TYR PHE PHE ALA GLY ALA ARG VAL VAL ASN ALA SEQRES 14 C 193 ARG SER GLY ILE GLY ASP VAL GLU TYR GLU ARG SER ALA SEQRES 15 C 193 ILE VAL PHE ARG ASP ARG ASN SER SER GLU SER MODRES 1RTY MSE A 140 MET SELENOMETHIONINE MODRES 1RTY MSE B 1 MET SELENOMETHIONINE MODRES 1RTY MSE B 140 MET SELENOMETHIONINE MODRES 1RTY MSE C 140 MET SELENOMETHIONINE HET MSE A 140 8 HET MSE B 1 8 HET MSE B 140 8 HET MSE C 140 8 HET PO4 A 194 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 4 PO4 O4 P 3- FORMUL 5 HOH *183(H2 O) HELIX 1 1 ASP A 23 SER A 48 1 26 HELIX 2 2 PHE A 53 ILE A 76 1 24 HELIX 3 3 THR A 86 ALA A 104 1 19 HELIX 4 4 SER A 116 GLU A 143 1 28 HELIX 5 5 HIS A 146 SER A 171 1 26 HELIX 6 6 ASP B 23 GLY B 49 1 27 HELIX 7 7 PHE B 53 ALA B 75 1 23 HELIX 8 8 GLU B 79 TYR B 83 5 5 HELIX 9 9 THR B 86 ALA B 104 1 19 HELIX 10 10 SER B 116 GLU B 143 1 28 HELIX 11 11 HIS B 146 SER B 171 1 26 HELIX 12 12 ASP C 23 SER C 48 1 26 HELIX 13 13 PHE C 53 ALA C 75 1 23 HELIX 14 14 THR C 86 ALA C 104 1 19 HELIX 15 15 SER C 116 GLU C 143 1 28 HELIX 16 16 HIS C 146 SER C 171 1 26 HELIX 17 17 GLU C 179 ILE C 183 5 5 SHEET 1 A 2 PHE B 110 LEU B 112 0 SHEET 2 A 2 VAL B 176 TYR B 178 -1 O VAL B 176 N LEU B 112 SHEET 1 B 2 ILE C 111 LEU C 112 0 SHEET 2 B 2 VAL C 176 GLU C 177 -1 O VAL C 176 N LEU C 112 LINK C LEU A 139 N MSE A 140 1555 1555 1.33 LINK C MSE A 140 N LYS A 141 1555 1555 1.33 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C LEU B 139 N MSE B 140 1555 1555 1.33 LINK C MSE B 140 N LYS B 141 1555 1555 1.33 LINK C LEU C 139 N MSE C 140 1555 1555 1.33 LINK C MSE C 140 N LYS C 141 1555 1555 1.33 SITE 1 AC1 9 ARG A 131 ARG A 135 ARG B 131 ARG B 135 SITE 2 AC1 9 ARG C 131 ARG C 135 HOH C 196 HOH A 197 SITE 3 AC1 9 HOH A 232 CRYST1 104.350 104.350 55.985 90.00 90.00 90.00 P 4 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009583 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009583 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017862 0.00000